Array 1 127120-128916 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFG01000005.1 Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 gcontig_1106390391962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127120 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 127181 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 127242 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 127303 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 127364 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 127425 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 127486 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 127547 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 127608 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 127669 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 127730 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 127791 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 127852 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 127913 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 127974 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 128035 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 128096 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 128157 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 128218 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 128279 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 128340 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 128401 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 128462 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 128523 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 128584 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 128645 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 128706 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 128767 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 128828 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 128889 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145598-147337 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFG01000005.1 Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066 gcontig_1106390391962, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145598 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 145659 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 145720 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 145781 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 145842 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 145903 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 145964 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 146025 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 146086 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 146147 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 146208 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 146269 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 146330 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 146391 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 146452 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 146513 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 146574 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 146635 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 146697 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 146759 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 146820 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 146881 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 146942 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 147003 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 147064 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 147125 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 147186 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 147247 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 147308 29 100.0 0 ............................. | A [147335] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //