Array 1 149892-148582 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXH01000090.1 Escherichia coli strain A26 NODE_1_length_261546_cov_80.0872, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149891 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 149830 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 149769 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 149708 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 149647 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 149586 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 149525 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 149464 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 149403 29 96.6 32 ............G................ ATTTCATCAAAGCATTAAGGGATGGAATAAAG 149342 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 149281 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 149220 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 149159 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 149098 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 149037 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 148976 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 148915 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 148854 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 148793 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 148732 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 148671 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 148610 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 176916-175441 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRXH01000090.1 Escherichia coli strain A26 NODE_1_length_261546_cov_80.0872, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 176915 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 176854 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 176793 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 176732 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 176671 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 176610 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 176549 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 176488 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 176427 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 176366 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 176305 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [176279] Deletion [176265] 176263 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 176202 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 176141 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 176080 29 96.6 32 .............G............... CCATGACTATAAAAGCTTATATTTTGATAAAT 176019 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 175958 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 175897 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 175836 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 175775 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 175714 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 175653 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 175591 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 175530 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 175469 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //