Array 1 139981-138362 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPWB01000001.1 Streptococcus agalactiae strain RBH09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 139980 36 100.0 29 .................................... GACTTAGATTCTATTCAAGACATGGTTTT 139915 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 139849 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 139783 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 139717 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 139651 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 139585 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 139519 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 139453 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 139387 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 139321 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 139255 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 139189 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 139123 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 139057 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 138991 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 138925 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 138859 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 138793 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 138727 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 138661 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 138595 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 138529 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 138463 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 138397 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //