Array 1 74587-75469 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDNW010000007.1 Escherichia coli strain 18FS2-1 NODE_7_length_195947_cov_53.631314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74587 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 74648 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 74709 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 74770 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 74831 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 74892 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 74953 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 75014 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 75075 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 75136 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 75197 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 75258 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 75319 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 75380 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 75441 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101172-102359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDNW010000007.1 Escherichia coli strain 18FS2-1 NODE_7_length_195947_cov_53.631314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101172 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 101233 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 101294 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 101355 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 101416 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 101477 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 101538 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 101599 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 101660 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 101721 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 101782 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 101843 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 101904 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 101965 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 102026 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 102087 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 102148 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 102209 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 102270 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 102331 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //