Array 1 451232-451518 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906466.1 Listeria ivanovii subsp. ivanovii strain NCTC11007 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 451232 29 100.0 35 ............................. CTGTATAAATTTCATCCGATGAATTTCGACATCGT 451296 29 100.0 36 ............................. AAATCGTTGTGAGATAATTATTTCAGATTGAGAATT 451361 29 100.0 36 ............................. GTGATAGAAATGTGAGGACTATCCGTTGCCACGCCA 451426 29 96.6 35 ................A............ ACATACAAAGCGGTTTGGAAATTTTCTGAACCAAC 451490 29 82.8 0 .......C....C..GA.....A...... | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 95.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TCAGCTGACGTTCTATTAGAAAAAGGTGCTGTAGAAGTAATCGCCTGTGCAACTCATTCAGTTATGGCTGGAGATGCAACAGAACGATTACAAAACTCACCAATCAAAGAAATAATCATATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGAAAAGCTAACAACTATCTCCATTGGTCGAATCTTAGGTCGTGCAATCGAAGGGGTTCAAGAAAATCGCTCGTTGCATCCACTTTTTTAAGGAGATTAATAGTAGGAAATTGGGAACAGGGCTTCTATTGGGGCTCTGTTTTTTTATGAACTATTATCTGTCGACCATCAGTAGTGCAGAAAACAGGGGAGGTCGACAGAAAACTGGATTGACTGTGAGAGAATGAGTTTGAAGCTTTTAAAGTTAGTTATTAGTAGTTAGACATTCAAATTTCACCCGATTTGAAGAAGGTCGACAATAATAGGCGTTTGAGGTAAGATGGGAGTAAGGAAAAAATGAAGCGG # Right flank : TTTGTCTAACCTTTAAACATATCTACAATATTAGCCAACTCAAAAACAACAAGAATACATAAAAAGGGAGGAAACACCAATGAAAAAAGCGCTTTGCCCCATCCTATTGCTATTGATCCTACTAGCCAGTTGCTCCACGCAAGATGAAACTCTATCCCCGAATACCAAAATTCATAAAAATAGTGTCATTAGAGCTGATTATAAGATACCACAAAACCTGGCAGAACTAGAATCAGACAGCGAAGATATTGTCCAAGTAAAATTAATACGAAATAAAGAAATTGGTAAAGGAAACAACAGCTCAATAACGGAAGTAGAAATAATCAAAAACTACAAAGGCAGTTTTGAGCCCGGTGATAAAGTGGATATTTCAGAACCGTGGCTTTTAACTTCAGGAGAATACCAAGCGGTGGAAAATTACATTGCACTCGAAAAAGGTCAAGAATATATCCTGTTTTTAAGTGGTGGACATGGCACGGATAAAGTAAGCTCAATCACGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 460506-461118 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT906466.1 Listeria ivanovii subsp. ivanovii strain NCTC11007 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 460506 29 100.0 37 ............................. AACGACGAAATGAACAAGTTATATAAAAAACATCCAG 460572 29 100.0 36 ............................. TCAATTCCCTTGTTCGCTATAAACGGATGGAATAAA 460637 29 100.0 37 ............................. AGCTTCCTTTTTTTAAGAAATTAGCAACATTTTCAGC 460703 29 100.0 34 ............................. GGAGGAACAGCGACCGGTTTCGGCTCGGATATTA 460766 29 100.0 36 ............................. TAGCTTTGCATTTTTTCAGTGATAGAAGTCGCATAT 460831 29 100.0 35 ............................. CCACATATAAAATTACGCCTCCTAATTTTAGTAAT 460895 29 100.0 35 ............................. AACGATATTGGTACAAAAGTAAATTTATCGTTTTT 460959 29 100.0 36 ............................. AATATCATAGATGCGACTACAACGCCGTCTGACACG 461024 29 100.0 37 ............................. GTCAAATTGCTCATTGAAATAAAGCGGGTTTGTGATT 461090 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 36 GTTTTAATTACTTATTATGAAATGTAAAT # Left flank : TAGCTGCTTTACAGTATTCTTGCTTGTATCTGATGGTGACATTTCTAATCATGATTGGAACCTCTTATAAAAATTATCAGGAGTTATTAAGCATAGATGGTGAAATATTGTATCAATACTTCATAAATGGAAGCCTGCAAATATTTTTTTATAGTTTAATTATCCTATTAACTTATAGTATAACGGGAAAAATAACGTATGCTCTATATCTGAATCTAGGGTTAATTATCTTGCTGCTACCAGTAATAAATATTAATCATATTCTTCCTATTGGATTAAATGCTATGGGAATGCTTGAGGATAGAACGCCATATCAATTATCTCTACAATTACTGATAGCCATATTGATGATTACAATGATATTAATTTTAGTTAATAGAAAAAGAACGATACCGCAATAAGCATAAAAAAGGAGCGAAACAATGAGTGATACTATAATTGAATGTATTAATGTTTCAAAAGAGTTTAAACATATACAGTTGTTTACGGATGTTAATATA # Right flank : TATTTTTTGTGTCGAGCCAATTAAATTGTGTATTTGAATTTTAGCTTCTTAACATTAATAGATAAAATATTCATTGAATTTCTAAATCTCTTTGTCAAAGTAAATGTGGGAAATAAGATGGTATAGGCTAGAAGAAAACAAAGCAAAAGTTTGCGAACTAGAAATCCAGTAAGTACCTTGCAAAAGAAGTAAAGCGCATGCGGCGAAAAGACATCACCGAACTAAATGGTTATATTTACAGGTTAAGAGGTAGCAATACAATAGTAAAAATTGGCCCGAAAAATCAAAGGAGCAATCACAGACTCAGAGGACTAACGAATATAGCGATACCTTTAGAGCAGATAAAAAGCTTTAAGGGTATTTTTATCTCCAAAAACCTCTCTTTTACTGGCCCATCCCCATATTCCTAATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAGTAACATAACTCTAAACTTATAATGAACGTAGTAAATGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //