Array 1 48-990 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAA01000361.1 Salmonella enterica subsp. enterica serovar Rissen strain BCW_2764 NODE_361_length_1994_cov_3.2522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 109 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 170 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 231 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 292 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 353 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 414 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 475 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 536 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 597 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 658 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 719 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 780 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 841 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 902 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 963 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGGCCGACGCCATCCGGATAGCGCTGTCAGCTGCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 356-1422 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAA01000258.1 Salmonella enterica subsp. enterica serovar Rissen strain BCW_2764 NODE_258_length_4868_cov_3.49969, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 356 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 417 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 478 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 539 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 600 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 661 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 722 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 783 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 844 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 905 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 966 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 1027 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 1088 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 1149 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1210 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1271 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1332 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1393 29 93.1 0 A...........T................ | A [1419] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTCCGATCTTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 603-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYAA01000092.1 Salmonella enterica subsp. enterica serovar Rissen strain BCW_2764 NODE_92_length_16098_cov_3.7135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 602 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 541 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 480 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 419 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 358 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 297 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 236 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 175 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 114 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 53 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GGTAGCCTTCAGACAAGATCGGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //