Array 1 321809-323850 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKA01000007.1 Salmonella sp. zj-f78 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 321809 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 321870 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 321931 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 321992 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 322054 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 322115 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 322176 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 322237 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 322298 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 322359 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 322420 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 322481 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 322542 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 322603 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 322664 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 322725 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 322786 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 322847 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 322908 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 322969 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 323030 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 323091 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 323152 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 323213 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 323274 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 323335 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 323396 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 323457 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 323518 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 323579 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 323640 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 323701 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 323762 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 323823 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 97.6 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 341483-343464 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKA01000007.1 Salmonella sp. zj-f78 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 341483 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 341544 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 341605 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 341666 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 341727 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 341788 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 341849 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 341910 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 341971 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 342032 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 342093 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 342154 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 342215 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 342276 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 342337 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 342398 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 342459 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 342520 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 342581 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 342642 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 342703 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 342764 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 342825 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 342886 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 342947 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 343008 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 343069 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 343130 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 343191 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 343252 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 343313 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 343374 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 343435 29 100.0 0 ............................. | A [343462] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //