Array 1 1467-94 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXXA01000013.1 Escherichia coli isolate chicken fecal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1466 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 1405 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 1344 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 1283 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 1222 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 1160 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 1099 29 96.6 32 .......................G..... GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 1038 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 977 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 916 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 855 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 794 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 733 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 672 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 611 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 550 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 488 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 427 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 366 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 305 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 244 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 183 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 122 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 160375-157845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXXA01000024.1 Escherichia coli isolate chicken fecal, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 160374 29 100.0 32 ............................. CGTCGCCACACGCTGGCGCTTCAGGGGTGCTC 160313 29 100.0 32 ............................. GAACGATTTATAAAAACACCTTTCGCCTTTTT 160252 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 160191 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 160130 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 160069 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 160008 29 100.0 32 ............................. ACTCTGATAGCCTGCTCAGAATCAAGGCGCAG 159947 29 100.0 32 ............................. CGCGATAACGCTCGCCCATCACGGTTTTCAAT 159886 29 100.0 32 ............................. CCAATATTTTTTGCATAAGATAAAGGTGATAA 159825 29 100.0 32 ............................. TTCTGTCAGCGCAGGCATACGGCCCGCCTGTG 159764 29 100.0 32 ............................. GCCAGGCGGGAAGCGATGGGCGGTTAACTGGT 159703 29 100.0 32 ............................. CGGCGACGATGATCCCCTCAGGTATTGCGCAG 159642 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 159581 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 159520 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 159459 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 159398 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 159337 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 159276 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 159215 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 159154 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 159093 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 159032 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 158971 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 158910 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 158849 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 158788 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 158727 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 158666 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 158605 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 158544 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 158483 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 158422 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 158361 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 158300 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 158239 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 158178 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 158117 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 158056 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 157995 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 157934 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 157873 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //