Array 1 104305-102564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMCA010000025.1 Actinomadura sp. RB99 amrb99_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 104304 29 100.0 32 ............................. AGAACCCATCTGACGGGGATCACATCCGGTGG 104243 29 100.0 32 ............................. CCGTGCTCGCGGAACAGGCCGTAGTGCCGGGT 104182 29 100.0 32 ............................. CTCCGCGGCAGCGATTCCCCCAGCCACCAACC 104121 29 100.0 32 ............................. TGTGCTGGTCGGCCAGTTGGATGAACTCGGCG 104060 29 100.0 32 ............................. GACCCCGAGTCCGAAGCCGTCCGCGCCGCCAT 103999 29 100.0 32 ............................. GCAAGACCCTCCCGGTGTCGGTCGAAGCGGAC 103938 29 96.6 32 ..............A.............. AACGCCGAGGGAGAGCGCGCCGAGCCGCTGCC 103877 29 100.0 32 ............................. TCTACCAGGGTGACGGCCCGCCTAGTTGCCGT 103816 29 100.0 32 ............................. CCGGAGCACGAGACCACCGTCGCCGACCCGAC 103755 29 96.6 34 ....C........................ ACGTCGGGACGTCTGGACGTCCAGGCGGCGACAT 103692 29 100.0 32 ............................. GCGGAGGACGCCCCCTGGAGCCTGATCCAGGA 103631 29 96.6 32 ............................A GTTCCACGTCGCGATCGTCGCGTCCTTGGTCC 103570 29 100.0 32 ............................. ATCACGCGCGTCGTCGCGATCCACGAAGGGTG 103509 29 100.0 32 ............................. GCCCCGACACTCCGCGCGGGCAGGAGAGCGAC 103448 29 100.0 32 ............................. CGAACCCGCCCGGCCGCCCGATGGTGAAACTG 103387 29 96.6 32 ......T...................... GATCTGAAGGCCAGCCTCGACCAGCTCTCCGG 103326 29 100.0 32 ............................. TCCGAGCCGATCGTGTGGTGGGGACGGGACCG 103265 29 100.0 32 ............................. ACCTGCCCGAACGTCGTCCCGGTGATCACGCC 103204 29 100.0 32 ............................. TCGCGGCGGCAGACCGAGACGGACGCGATGTT 103143 29 100.0 32 ............................. TGGCTGTGCACGATCTGCCTCGCCAGCAGCCG 103082 29 100.0 32 ............................. TCGGGCGGACCGGTCTCGATGGCGAGGCCGAC 103021 29 100.0 32 ............................. CGGGCCGGGGGGAGGTTCTTGTGGTAGATGTC 102960 29 100.0 32 ............................. TGGGGAAAGGACCCGTTCGGGGCCGCCATCCT 102899 29 100.0 33 ............................. ATCACCGCGATTGCGATGACGAGGACGATGAAC 102837 29 96.6 32 ..............G.............. GAGACAGGCACGCTCAACGAGCGCGCCGGCCG 102776 29 96.6 32 ............G................ GAGCTCCGGTACCTGTTTGAGTACCAGCGGGA 102715 29 100.0 32 ............................. TCCGGCAACGCCGCGAGCATCACTAACCCGTC C [102699] 102653 29 100.0 32 ............................. CGGCAGGCCCTCGCGTTCGAGGTGCTCCGCGC 102592 29 82.8 0 ........T..A.GT...........T.. | ========== ====== ====== ====== ============================= ================================== ================== 29 29 98.7 32 GTGCTCCCCACGCCCGTGGGGGTGGTCCG # Left flank : CTGAGCGTGCCCGAGCCTCTCGCCCCGGACGTCCTCGTAGCCGGACAAAGCGGCGAAAGCGTCCTCCTGCTGCGCCTGAAACGACGGGATGACCTTGCCGATGTCATGCAACGACGCCCAGAACATCAAGAGACATCGAGCGTGCTCCTCGTCCACCTGCAGATTCGTGGCGATACGCCGACGCGTCGCAGGACTGGCATAAAGGTCCCACAGGACGCCGATCGCAGCGGCAGCATCGAGCAGATGGCACACGACCGGGTAAGGAGCAGGCAGCCCGTGCTTCTTGCCCCACAGGTCCAAGTCCACGCACGGCAGATCGGATCCGGAGCCGGCCACGATCCCTCCAGCACTCGTCTCGTCGCTTGCCGCACGAACGTAGCCAGCGGGTCTGACAATCCAACGCCACCGCGAACACTATGCTCGGCCGCATGCGCGGCCAGAACCCGCAGCGACGAGCGAGAAACGCCATGTGCCCTTGTGAACTAGCAGGTCGCAAAGGG # Right flank : TGTGACCGCCGCGGGCTACTTGCTGAAGTAGCTGTGGAGGGCTGCGATGCAGGCGGCCTGGCGGGTGCGGTCGTGTGGGAAGCGGCGGCGGCACTCGTGACCGATCCATGCTGGCGGCTTACGGCTGTGGGCCGCCTTGTGATGCCGGGGCCGGGGCCGGGGTCGGGCGTGGGCTGCGTCCCGGGGTTTCCCCGTTTCCCGCCGCCGGTTTACGGCGTTGCGGCGGGCCAGCGTTGGGATCTGTGCCGTCGATGCGCTCGGGGACGCATCGAGCCGCTGGTGCCGTTGGGCCTCGCGGCTCGGTTCTTGGTGCCGTGACGGGGAGGGCGCGCGGCGTGCGGGGGCTGCCGATGAACTCGGCTGCGGGCGCTGGAACGCGCCGGTCGAGATGTCGTCGCTGGTGGGTGACGGCGTCGTGTGAGAGTGCCCGGCGAGAGTCAAGGCGAGGGCTGCCGCGGAGGAGGCCAGTACGCCGGTGACTGCGGAGACCAGCCATCTGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCCCGTGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113702-115616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMCA010000025.1 Actinomadura sp. RB99 amrb99_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113702 29 96.6 33 ............................A GCGTGGGTGGGGGACGACGACGTCATCTCCTAT 113764 29 100.0 32 ............................. GCTCCGGAGTCCACGGCGTAGTGGCGGTAGTC 113825 29 100.0 32 ............................. ACCGTGCTGTCGGTCATCGCCGGGTCGAACGC 113886 29 100.0 32 ............................. TCGACGACGAGGTCGTGGTGCTCGCGGCAGTC 113947 29 100.0 31 ............................. CCGAGGACGCGGCCTGATGAGTGCCGACGTC 114007 29 100.0 32 ............................. GAATGGGACCTGACGACCGGCGGCGGCATGCG 114068 29 100.0 32 ............................. GTCCTCATGCCGCGGAACATCGCCGACGGCAT 114129 29 100.0 32 ............................. GCATGGACGAGACCCTGGCGCGCATGATCGCC 114190 29 100.0 32 ............................. TCCGGCAGCAAGGCCGACTGGGTCGCCTGGGC 114251 29 100.0 32 ............................. CCGGAGAGTCCCAGCGCGGGATCAGCAGGGAC 114312 29 100.0 32 ............................. CTTCACTCCGATGAGCGATAAACGATCTTGAA 114373 29 100.0 29 ............................. GTCGCCAGCGAGGCTGTAGCCGCCGTACG 114431 29 100.0 32 ............................. AATTTGCCGCGGGCGACGGTGAAGGTGAAGGT 114492 29 100.0 32 ............................. TCGCGGTGTTCCGGCGCGTGGAGCAGGACAAC 114553 29 100.0 32 ............................. GTCTCGATGCTCTCGTTACCCGCCGGGTCCTT 114614 29 100.0 32 ............................. CCGCCCTGCCCGACGCGATGCGCCTCGCCGTC 114675 29 96.6 32 ..............T.............. TTCGACGGCGACCCGGAGACCGGCCAGGCCGG 114736 29 100.0 32 ............................. CACGAGCTGTGGCGCGTCAATGGCAGGGGGAT 114797 29 96.6 32 .........G................... TTGCTCAGACCTGGTCGGCGATGCGCGGAGCG 114858 29 100.0 32 ............................. CCGCGGACAGATGATGCGAGCGCGGACCGGGG 114919 29 93.1 31 .....................C......C GATCGCATAGCCCGCTGGACGATCACGCACA 114979 29 100.0 32 ............................. GCGCCGCTCGATCCGGGTGGGCCGCCTCCGCC 115040 28 96.6 32 .....................-....... GTCTGCTTCGCTCATCAGTGCCCGATCAACGC 115100 29 100.0 32 ............................. GCGCCGGCTTCGCGGCCGCGGTGGCCGTACTC 115161 29 100.0 32 ............................. CGGTGTTTGGTCCCGTGGGGTAGACGTGCCGT 115222 29 100.0 32 ............................. TCCTCGATGAACGGGGGCGTCCACGTGCGCCC 115283 29 96.6 32 ..........T.................. GACGCCGCAGACATGAAGCGCCTTGCACTGGT 115344 29 100.0 32 ............................. CAGTGGCTCTATGACGCAATGGTCTGGTGGAA 115405 29 100.0 32 ............................. GTTCGACGGCTCGGGGATCCGGTCGCCGTCGG 115466 29 96.6 32 ...................A......... CAGCCGAAGGAGCCGGAGATGCTCCGGATGCC 115527 29 93.1 32 .CA.......................... GTGTGGGTAGTGGTCGGGGAGTCCGCGCTCCA 115588 29 79.3 0 ......................ACACG.T | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.3 32 GTGCTCCCCACGCCCGTGGGGGTGGTCCG # Left flank : ACTACGCCGACACCATCGCTCCGGGGGACGACCCGTGGGCACCATGATCGTGCTCTCGACCACAGCCGTCCCCGACTACGTGCGCGGCTCCCTCACCCGCTGGCTCACCGAACCGGCACCCGGCTTGTACGTCGGCACTGTCTCCGCCCGTGTCCGCGACGAACTCTGGAAGGCCGTCACCGAGGCGGTCGGCGACGGCGCCGCCGTTCTCGTCCACCCGGCGACAACCGAACAAGGCTTCACCATCAAGACGGCAGGCGAACGCCGCCGCCGCATCGCCGACTTCGATGGACTGCAACTCGTCCGCTTCCTTCCCCAAGACCTCGACGAGGCACAAGACACACAACCCTCAGCCGAGGGGGCGCCGGATGCCAGGAAGTAAACGGCGAAGGACCGGCGCCGAATCTCGTTACCGGCCCGTCATCTGCTACTCCACTACAGCGACCTCGTCCGGATCCAACGAACACCATGTTCCCTTGTGAAACCGCAGGTCGCGAAGG # Right flank : TCGACCAGCCGCTGGCGTGGCTGGTCGAGGCGATCGGCCCGGCCCCGGCCGCCGAGGACCTGGACGCGCGGGCCGCGCGGGCGGAGCGGGCCCCGCCCGTCGTGGCCTACCGGGAGCAGTACGGGTACGAGGCCGAGTCCGACGCGATCGCGGCCGCCCCGTCCCGCAAGGCGCCCGAGCAGCGGGCCGCGTGGTGGGTGGCGCGTGACGCGCTCGGCAACCCGGACGCCTCCCGCGAGATCAGCGGCGCCAGCGACGGCGAGCTGTGGGTGATGCGAGCCTCCTACGAGCGTGAAGCCGCGTGGGCGCCGGCCTACGTCGGTGACGAGCTCAGCCAGGTCAGCCGGGAGGCGCGCGAGCGGGCCGCCGAGGCCGTCCGGTTGCGGGCCCGCGCCGCGGCGATCGCCGGGCAGGACGCCGAGGCGGCCGCCGCCCTGGAGGCCCGCACGGACGGACAGCAGACCCTCGCCGACGCGGCCGACCAGCAGCGCCGCGCGCTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCCCGTGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73046-76946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMCA010000006.1 Actinomadura sp. RB99 amrb99_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 73046 27 78.6 33 CAT.C.....T.............-... GCGCCGATCTGGTTGAGGATCTAGTTCAGCCAG 73106 27 85.7 33 ...GC......-........A....... CTTGGTCGGTGCTGCGCAGAACGTGTTGAAGGA 73166 28 100.0 33 ............................ GGCCTCGCAACCGGTGATCGAGCGGTCCGAGCA 73227 28 96.4 33 ...........C................ CGCGCCGGGCGGCTGGTGGGTCGCGTCGTCACA 73288 28 100.0 33 ............................ AGGGCCTGTCGATCCCGGACGCCGTCCAGTCGA 73349 28 100.0 33 ............................ GTGAAGGAGGTGGCGGCGCCGTGGGCGCAGTCG 73410 28 92.9 33 ..........................GT GGCACCGGGCCGGCGGTCAGCATCCGGTGCCAG 73471 28 96.4 33 ............G............... CCGTTGGCGACCGCCCAGGCGACCCACTCGGCC 73532 28 96.4 33 .....G...................... ATCTGCGAGGGCAGCGAAGCGGAACATGACGTC 73593 28 100.0 33 ............................ TCCTTCCGGGAGTCCTGGACAACCCGGAAGTAC 73654 27 96.4 33 .......-.................... ATGAACGAGCCGAAGTTCCCCAAGGAAATCTTC 73714 28 100.0 33 ............................ GTCCAGCGCTCCCGGCAGTACGCCTCGAAGCTC 73775 28 100.0 33 ............................ GCCGCCGAGGCCGCGCGGGGTGCGGACGTGGTG 73836 28 100.0 33 ............................ GCTGGGTGTGCTCGCAAACGATGGCGTGCTGGC 73897 28 100.0 33 ............................ TCCGGGTCGGCTTCCCACCGGCAGTCCGGGCAC 73958 28 100.0 33 ............................ GCCGCGACGGGCGGCCGGTGGTCCGGGATGATG 74019 28 100.0 33 ............................ TGGTGGCGGTGAGGGGTGCGGCGAATGGCGCCA 74080 28 100.0 33 ............................ TCGTCGCGGAGCGCCAGGCCGTGCTTCCCGAGC 74141 28 96.4 34 ......................A..... CACCGGCCGGGCCGCCGGGCGCGGCGGCGCCGGG 74203 28 100.0 33 ............................ CACCGGCCGGGGCGGCGGCGGGTTGACGTAGCG 74264 28 100.0 33 ............................ CCGGGGATGGGGAGTTGGAGGGCCGCCAGGCGG 74325 28 100.0 33 ............................ GCGACAAGTTCCACCGCGAATACACCCGCAACT 74386 28 100.0 33 ............................ CAGGTGGTGATCGGGTCGCCCTGGACCACGAGG 74447 28 100.0 33 ............................ TAGCGGACCCGCGAGGCAACGTCCTCGATGACG 74508 28 96.4 33 .......T.................... TCCAGGACACCGCCGGTCGCGAACTTGATCGGG 74569 28 100.0 33 ............................ GGCCAGGCTCGTCCGGGCATGGGCGAGGCGGTG 74630 28 100.0 33 ............................ CGGTCGGTGGGGACGTAGGTCTGGAACTCCAGG 74691 28 100.0 33 ............................ CGGTCGGTGGGGACGTAGGTCTGGAACTCCAGG 74752 28 100.0 33 ............................ CTCGCTGTGACGCCCGAGGAGGTGCCGACGGCG 74813 28 100.0 33 ............................ CTTGGCATCGGTGGCCATCTGCTCGGCCAGCCG 74874 28 100.0 33 ............................ TCCTGGGGCTCGGCGTCCTGGTGCTCGTGGTGG 74935 28 100.0 33 ............................ ACCTTCTCGATCGTCCACGGCGCGATCTCCTCG 74996 28 100.0 33 ............................ TGCAGCTCCCCGACGAGCGGCCCGGCCGGCCGG 75057 28 100.0 33 ............................ TTCATGGTGCGGGTGGGTCCGCGTCTCAGTGTG 75118 28 96.4 33 ..........T................. TGGTCGTCGGCCTTGATCGGGGCGTCCTCGCCC 75179 28 92.9 33 .......................GG... AGCGATCGGAGCTGGGACCCGGGGGCGTCCCGC 75240 27 92.9 33 .............-..........G... TTGCCCTCGGCCTCGGGCACGGACTGGCCGTGC C [75247] 75301 28 82.1 3 .............ACC....A.....G. GGT GAT [75324] Deletion [75332] 75335 28 96.4 33 ........................G... GTGGATCAGCCGCTGCTCGATCGCGCGGACGGC 75396 28 96.4 33 ........................G... TGGCTGGAACGCTACCTGGACGAGGGCTACACC 75457 28 92.9 33 ..............T.........G... CCCGGCCGGGACGGGCCGGGCCAGGGCAGCGCC 75518 28 92.9 33 .............A..........G... ATGTCGGCGAGAGCTTTCAGGCCGCCAGCAAGC 75579 28 96.4 33 ........................G... CGAGGCGCAGCGCGGGCTCTGCAGGAAAACCGG 75640 28 100.0 33 ............................ GCTCGGTGTAGAGACGCCGAGCGATATACCCAC 75701 28 100.0 33 ............................ GTCGAGCCGCTCATGTGGGAGCACGGCGCCTCC 75762 28 100.0 33 ............................ GTGACGACGACGAACTGGACGGGCTTCTTCGTC 75823 28 100.0 33 ............................ AGGATCGCGCACCCGTACGCGAGCCCGAGCTGA 75884 28 100.0 33 ............................ GCCGCGGCGATCCGGGCGCGGGCCTGCGCCTGC 75945 28 96.4 34 ........................C... ATGCCGTCGCGGGACCCGTTCCTGCCCGTTGTCC 76007 28 92.9 33 ....C...................C... GAGGGCTCGCAGGAGCAGACCCAGCCGGGGCCC 76068 28 85.7 33 ....C.....GC............C... TCCGACGTCGCCGACGCGACCGGAACCGCCGGA 76129 28 92.9 31 ....C...................C... CGGGGGCGGCGTGGCGCGCGTGCACGCTCCA 76188 28 85.7 32 .A..C.........T.........C... CCAAGCCTCCGCCCCTCCCGGACCCCCGCCGC 76248 28 82.1 33 .A..C......C..T.........C... TCGACGGTGGACACCTCGAGCAGCGCGCGGCGC 76309 28 82.1 32 .A..C.........T.....A...C... CGAACGGCACTACGCATTGACCTCTCATCATG 76369 28 89.3 33 ....C.........T.........C... TGCTGGCCGAGCCGCGCAAGGTGCCGGGCGTGC A [76371] 76431 27 96.4 33 ......................-..... ATGCTTCCACAAGTGCCCGTAGTGGCCTACTGG 76491 28 100.0 33 ............................ ATGGTGGCCGTCAGCACCGCGGCGCTGGTCGGG 76552 28 92.9 33 ..................A.A....... TCGCCGCGGTGGACGCCGCGCTGGTAGGAGCAG 76613 28 92.9 33 ........................C..G GGTTTCCTCGCCGGTCGTAATAGGTGAGGGTCA 76674 28 96.4 33 ........................C... GCGAGACCGATGCCGCTGATGATTCCGTCGAGC 76735 28 82.1 33 ....C.A.T............A..C... ATGTCTTCCCGTGCGTACGCGGCCCCCGCCGTG 76796 28 85.7 93 ....C....G...A..........C... GCCGGACAGGTCGAGCATCAGGCCGAGGTCGTGGGGCCATCTCCGTACGCGCGGGCCGCCTGAGTTCCAGGAAGGCGTGCGGCACGCCGTCAA CA [76812] 76919 28 85.7 0 ...GC..........C........C... | ========== ====== ====== ====== ============================ ============================================================================================= ================== 64 28 95.5 33 GGACGATCCCCGCGGGCGCGGGGCAGAC # Left flank : CGACGCCGAGGGCGTCCCGGCCTACCTGGAGAGCTCGAAGGAGCGGAATCTCCACTATGACGTAAACGCGGATGTCTCACCTTCTCAACCGGCGCGAGGAGTACGCAGTCTTCCGACAGCCATGACTGCGAGGCATCCAGTTGACATCAGCAGTGACCAATCGCCGGTACCGGTCGGCGGCGATCGCAAAATCTACTCCTAACCAAAGCGCTGACCCGCAAGCATCAGGCCGCGCATGCACGTTTTTCGGTTTGACCGGTCAAATGGGGCACCGTGCGCAACGAGAACCAAGTGCCGAGCGCACGCGGCTAACTTTGGTCGAACGCCACCACAACGACCGCTTCCGCAGCAGTGCGAGCGCCACCGCCCGGATTCGTCTCGACAGCCAACCCATTTCCGGGCGCCCTTCGTTGTACCTTCGATCGCCAACGACGAGTCCTCCTCGCACAACCGCGAGGCCGACGTGACGCCGGCGGAGGTGACACCGTCCCACTGCAGAC # Right flank : CGGCCTGAGCCTCATCGTCATCGCCGCCTCCGCGCGTGAAGATCTTCTTGCGTGGCCGGTCGAAGCCTTGGCGGCTCCTTTGTCTGTGGATTCTGTGGAGCGATAGGAGGTTCTTCCTCCATGATGGAGGCGGTCTCCCGCCCGTAGGCGGGAGACCGGGGGCTCCGTCGGCCTTTGACGAGGTTGCCATTCCAGCCGTCACATAAAGAGGCGGCGGAGCCCCTCCCAGCACAGCCGTGTGCCCAGGGCGATCAGGATCGCCCTTATCGACTCACGCCAGAATCCGGTACTACCCAGCAGCTTTGGCCGCTCAGAGATCAATAACTTCCAGTTGATCTTACTCGGCGACTCTCGATCAGGCACACGTCTCCCCTCGCTTTGCATCGCTGTGCGCGAAGCACTCAAGAGGTGTCTACCGCACCTAGATGACGTCCGTCAGGCGGACGACCGACTGTGCATGAGTGGCGGCATCGACCGACGTATGCCGATACGCTCAACAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACGATCCCCGCGGGCGCGGGGCAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [17-56] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 85532-92521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMCA010000006.1 Actinomadura sp. RB99 amrb99_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================ ================== 85532 28 82.1 33 CC..C....A....C............. GTGAAGATCATGCGCTAACCGTCCCAGTCGCGC AT [85535] 85595 28 82.1 33 ...T........T....A...C.A.... CGTCTGGTTGATCGCCTCGGAACTCGTCACCAA 85656 28 89.3 32 ....C............A.T........ CTTCTCGGCCGTCCGGCGACCGGAACCTGGTC 85716 28 89.3 33 ..G...T.T................... CTCCTCGGGCACGGGCAGTTGCGCGCACACGTC 85777 28 100.0 33 ............................ GCAGGACGGTCTGAGCGCGATCGAGGTTCGAGC 85838 28 82.1 33 ........T..A.GC..A.......... GGCGGCCTTGCCGTACTTCTTGCGGCCGATGGC 85899 26 85.7 33 ...A....--...A.............. GACCAGCTACGGCGCCGCGCTCCTCGCCAAGAC 85958 28 85.7 33 ...........A.GC..........C.. CTGGTGGGAGCCCCAGGCGCAGGACCTCAAGGG 86019 28 89.3 33 ...........A.GC............. GCTGACGCCCGAACTGCTGAAGAAGCTCCGCCA 86080 28 85.7 33 ...........ATGC............. GAGTGGGACAAGATCCACGGGAAGGCCGCGGAG 86141 28 89.3 33 ...........A.GC............. CCTCGGCATGAAGGAGACCGACCCGGCCGAGCG 86202 28 85.7 33 ........A..A.GA............. GGGCAACAGCCTCGCGATCGCCGATGAGGCGTA 86263 28 89.3 33 ...........A.GC............. GTACGGCCGCTACGAGCGCGCCGCCTAACTAGG 86324 28 92.9 33 ..............C...........C. GGGTCTCCCGGGCCGGATCAAGTCGGCGCTCGG 86385 27 92.9 33 .................-........C. TGCCCTATGCCACTGCTGATGAGGTAGCGGCAA 86445 28 92.9 33 C.........................C. CACCCCGACCTCGGAGAAGGTCATCCCCGCGTG G [86460] 86507 28 92.9 30 ..................A....A.... GTGCCGCGGCGCTCTGAGCGCCGTGTAGGG 86565 28 96.4 33 .................C.......... GCCATAGGTGTGTGCGCCCCGGCCGATACCCGT 86626 28 100.0 33 ............................ CTGAGCGAGGCGTCATGACCTTCACGGAGTGCG 86687 28 100.0 33 ............................ GGGCAGCGCGGCGGACTGGCCCGACCCGATGGC 86748 28 92.9 33 ...................A....C... GAAGGGCAAGGCCCCGAAGCTCGGCTCCAGGAA 86809 28 89.3 33 ........T.............CT.... GGCTTGGGCGCGGGCTCGGTCGGGGTCACGATC 86870 27 92.9 92 .....-....................C. GTGGTACCTGGTCAACGTCATCGGTGCCGCTTTGTCGGCCCGCTGCTGCGGGGTGGGCCCCTGCCGCCGCTGCAACGGAACCGGCCGGTACG 86989 28 92.9 33 ...............A....A....... CACCGGTGACCTCGAAGGGTGGGACGAGTGCGT 87050 28 92.9 33 .............T...A.......... TATGACTGGGCATGGCGGGGATGTTGAGGACGC 87111 28 96.4 33 ..............C............. GAGGAAGAACATCTCGACGGGGCGGAGAAGCAT 87172 28 100.0 33 ............................ CTTGTTCATGCACATCCAGTCGTAGCCGGTGAA 87233 27 96.4 33 .................-.......... CCGCCCATCGATCGCGACGGCGTGCGAGCGGGC 87293 28 89.3 33 ....................A....CC. GCGACAGCTCGACGACAGCGGAGCGGCTCGCCG 87354 28 85.7 36 ..........A........C...C...G GTCCGCGATCGGCTCACAAAATGCGAATCCTGGAAA G [87357] 87419 28 96.4 33 ...C........................ TCTGTTCGGTGACATCCTCGACCGGCAGATCCT 87480 28 92.9 33 C.........................C. GACGCGGGGGTCGCCGGGCTCCAGCGGGTCGAT 87541 28 92.9 33 ...A..........C............. GACATCGCAGGTCAGCCCCCGTTTGGCGGTCTC 87602 28 96.4 30 ..............C............. GCTACACGTGCTGTTCAGCCAGTGCGGGTG 87660 28 85.7 33 .A..T.........C..........C.. CCGGGTGCTGAACGAGGCGACTCGAGAGATCAG G [87666] 87722 28 92.9 33 ..............C...........C. GTAGGTCTTGCCGGCGGAGCGGACGCCCATGGT 87783 27 89.3 26 ..-........A.......A........ AAGCAAAGGCCTGACCGCTGGCACCA Deletion [87836] 87836 27 75.0 33 TG...-T....A.GC............. GTTCGGACGGCTTCCAACACGGCTTGTCGTCTG 87896 28 89.3 33 ...........A.GC............. TCTCGGGGCGGCTCTGGCCGCGCGCGGCCGCCG 87957 27 78.6 33 C....-G.....AGC............. TTTGCTCGAACACGGGCGGAGTCTTGGGGTCTC 88017 28 85.7 33 C..........A.GC............. CCTCATCGACGACTCGTACTTCTACGCGATCGT 88078 28 96.4 33 ...........A................ CTAGCGGTGGCGGGTTCGAGACCCGCAATCTCC 88139 28 100.0 33 ............................ CCGAAGCGGGCGCCGCTTCACCTCATCTCGCCA 88200 26 85.7 91 ........--.........A......C. GCCGGTGCGCAGCAGAAGCAGGACGACGATGGCGTTGGCCCCACCCCTGGGGATGGTCCCTTCGAGGACGGCGTTGTGTTCATCGAGACGG 88317 28 89.3 32 .G...........A............C. CGGGGTCATGCCTGGCGCTCCCCGTCCGCTCG 88377 28 82.1 32 .GTT.G.....A................ GTACCGGTGCCCTCGTGGTGTTCGGGTTCTAG 88437 28 71.4 144 TGTC.G...........A.......GG. CGCGCGGCCGGACGGCGCGGCCGCGGCCGGCTCGACGGCGCCGCGCCTGCGAGAGTGGTTCGACCTCGTGGCGCGGCACAGCGTGACCTAGCAGGCGCCTGCGGGGATGGTTTCGCGACCAGGACGTACTGGCCGTGCTCGAGG 88609 28 85.7 33 .GTC.G...................... GTACGGCCTCCCTGCCACAGGAAAGCTGACGCC T [88617] 88671 27 92.9 33 ...C..........-............. CCGAGTTAGCGCCGAACGATTGCGACGCGTACC 88731 28 96.4 32 ...................A........ CCCGTCCACCAGCCGGTACAGGATGATCAGGC 88791 28 96.4 33 ..............C............. CATGTTCGGGTGGGTGGCGTGCGTCGCCCCACG 88852 28 100.0 33 ............................ CCGCTATTTCGGGGCGCCATAGCAAGCCCTGCC 88913 28 100.0 33 ............................ CCTCGCGGAGGCGCCACCCCTGGAGCCACCCAG 88974 28 100.0 33 ............................ GTCCTGCCACGCCAGCTGTTCGGCCCGCGCCAC 89035 28 96.4 33 ......G..................... GGAGTGGGTGCCGTTGCGGTGCCCGCCCGACAG 89096 28 96.4 33 .................C.......... CACCACGAACGTCCCGTCCACGGCGCGCGAGAG 89157 27 89.3 33 C...........-.........G..... TCGTCATCCGCCTCCAAACCGCTCGGAGATCAC 89217 28 92.9 33 .........................CC. GCTGACCGCGTCGTTTTCGAGGGTGAGGTCACC 89278 28 89.3 33 ..T......................CC. CCCAGGTGATCCCGGCCGCGGACACCCCGGCGG 89339 28 92.9 33 .........................CC. CGCATGGTGCCGCTCTCGCCGTATGTCTGGAGC 89400 28 92.9 33 .........................CC. GGAGTAGCGGTGTCTGGGACACATCGCCACGGC 89461 28 92.9 33 .........................CC. GGTAGACAGGGTTGCACTACGGTTCGAGCAGAT 89522 28 92.9 33 .........................CC. GTGGGCCTTGCCGTACTCGGTGGTCGCGGTGTC 89583 27 89.3 33 .................-.......CC. CCTGCTGATCGAGATGGACGAGTACGAGTCCGC 89643 28 89.3 33 ...................T.....CC. GCGCGCGGCGCGCATGTACAAGCTCGCGCTCGA 89704 28 92.9 33 .........................CC. GGCGCCCGTCCTCGTCGTTCCGTTCACCCGGGC 89765 28 92.9 33 .........A................C. GTCCCTCGACATGGTCACCATCACCCTCACGGG 89826 28 92.9 33 ...........T..............C. GGACGTCTACAGCGCGATGGCCGGGAACATCAC 89887 27 89.3 33 .....-.....T..............C. GCACAAGGTGATCACGGCCGAGACGATCCCGCT 89947 28 92.9 33 ...........T..............C. CCCCTCCTCCGGCGCGTACGGCATCCCGCAGGC 90008 28 92.9 33 ...........T..............C. GGCGCACGCGGACGGCGCCTACCCGGGCATCCT 90069 28 85.7 33 .......GA..T..............C. CGTCGTGCTCCTCGGCTCGGCGGTGCGGTTGCG 90130 28 92.9 33 ..............C...........C. CCAGGTCGCCTCGTGGGGGAACCTGCTGGCGTC 90191 28 92.9 33 ..............C...........C. CACCATGCCCTTGCCGCCGGTAATCAGCAGCGC 90252 28 89.3 33 .C............C...........C. CATCTGGCACGGCATGGAGAACGGCCCGTACGC 90313 28 96.4 31 ......................C..... TCTTGGTGGAGTCGGTGAGGGTCTCACTGCA 90372 28 100.0 33 ............................ CGCCCAGGCTTTCACCGGGTCGCCGTACCGATC 90433 28 92.9 33 ........T.....C............. GCAGCAGCATGTGGACGCGTCCGCCTCGCTGAT 90494 28 92.9 33 ...A......................C. CCTGCACGCGATCTTCTCGTACTCGGCCTCGGT 90555 28 92.9 33 ............T........G...... AGACCACGCCTACGACCTCGACGTCCAGGTCCG 90616 27 85.7 33 .C.A.........A...-.......... CCCCTCCGACTCCTCCAGCGGGGTCATGTCCAC 90676 28 100.0 33 ............................ GCAGGCGCTCGCGGAGGCGACTGCGCAGGAGTT 90737 28 89.3 33 ...........A.AC............. CCGGTTCAAGGCGAAGGACGCGCTGCGGGCTGC 90798 28 82.1 33 ...........ATGC........A.... GCCAACTGTCGTACATGTGCTTCGGGCTGAACG 90859 28 82.1 22 C..........A.GC....A........ AGTGAAGTCATTGACCGCCCGG Deletion [90909] 90909 28 85.7 33 C..........A.GC............. TTCCGCCCACGCCCGCTGGCCGTTCAGGTAGCG 90970 28 82.1 33 .......T...ATGC............. CTCGACCTGGCACTGGTACCACCCCGGTACCGG 91031 28 82.1 33 ...........A.AC...A......C.. TCGTCGTGATGTCGACGTCCATAGCGACTCAGG 91092 28 85.7 33 ...........A.TC........A.... CGTCCCGCCCGCCATCGTCGTCGTTGGGGGAGG 91153 28 78.6 33 ..T...G....A.TG...........C. CCATGACGGCCCTTCCTGTCGCAGTCGGGTCGC 91214 28 92.9 32 ..............C...........C. CTTGTTGCCGGTCTCGTTGGCCGGGTAGCGTA 91274 28 92.9 33 ........T..A................ GTACGGCCGCTACGAGCGCGCCGCCTAACTAGG 91335 28 92.9 33 ..............C...A......... CGTGCTCGAGACAGCGGGCGCCGCGGCCGCCGT 91396 28 92.9 33 ..........T...C............. GCCGCTGATCACCGCCATCGGCGCGACGTTCCA 91457 27 92.9 33 .....-........C............. CCACAGGCCGCGGAGCCAGCCGTTCGGCGTGAT 91517 28 92.9 33 ..............C...........C. CCGTTGCCAGAACGGGCGCGGCCGCCCGCGCCC 91578 28 89.3 33 ...........TG.............C. CTCCAGCGTGAGGTCCCGCTCGTGGTGAACGTG 91639 28 92.9 33 .........................CC. CATGATGGCGTCGAGGAAGTCGTCGCGTAGGGC 91700 28 92.9 33 .........................CC. GCTGGCGGAGGCCCTGAACTGCCCGCGCGTGGT 91761 28 92.9 33 .........................CC. TTCTTCAAGCGCACCCGGCGCCTCACGTTCTCT 91822 28 92.9 33 .........................CC. CGCGACTACGGCCGCAGCGTCGGCGGGATCGAG 91883 28 92.9 33 .........................CC. GGTGATGATCCGGCGGCAGGTGAAGCAGGTCAA 91944 28 92.9 33 .........................CC. CAACATCGACGGCCGCCAGGCGCTGGTGCGGGC 92005 28 92.9 33 .........................CC. CCGCAGTTCCGTGGCAGTGCCCTCGTCGACGGA 92066 28 92.9 33 .........................CC. CACTGACCAGTTCGCCGCGTGGCTGCGCGGGCT 92127 28 92.9 33 .........................CC. GTGGCTCCCGACGGTCCGCCCAGTAGTGCAGGC 92188 28 92.9 33 .........................CC. CAGTTCCGCACGCTCGTCCGGCGTGTAGTCCGC 92249 28 96.4 33 ..........................C. TCGGCTGCCGCGGAGCTTCCGGTGCTCGGGCCC 92310 28 92.9 32 ........A.................C. ATGGACGCCGATCAGGCCGCGATCAACCAGCG T [92335] 92371 28 96.4 33 ........................A... CCCCGAGGACGCCCCGGAGCCGTGGTTCTACCG 92432 28 96.4 33 ..........................C. ACCTCTTCCCCGATCCGCTGACCCGGTCGTCAA 92493 28 96.4 0 ..........................C. | T [92518] ========== ====== ====== ====== ============================ ================================================================================================================================================ ================== 112 28 91.2 35 GTCGGCCCCGCGCCTGCGGGGATGGTTC # Left flank : AAGAAAGGGTTCAATATCCTACCTGCCGCCAATCCACATCCACTTCCCACCGAACAGGCCCATAACCTCCGCCTAGTGGATCGCAACCGGATCAGGTTCGCCAGGGAACGCGGAGAGAACGTAGCCCTCCACCGAGTTACATTCCAAGGCTTGCTAGAAGTAGCCGACGAGTCTGCCCTACGAGCAACCCTTACCTACGGCATAGGCCGCGCCCGCGCCTACGGCTGCGGCCTACTCACTCTCGCCCGCCCTACCAACGCCCATGGCTAAGCCAAAGTCCTAGTCTTTAGAGTTCCCGCTCACTTCCGACTGACGAGGGCACCGCCAGATCAGTTCCGCACGCGGGGACAACTCAGGCTCCAAGCCATGGACGGCCAGCCACGGCGCGTCATCTGCCCCGGGGGGTGGGCCAGACGACAAGCAGCGCGGGCGCTGGGACGGTTGATCGCTCCACGCATGCGGGGTGGTTCCGCGCCTTGAACAAAGGCCTCCGGCAACCT # Right flank : CCCGATCGGCGTCGCCCCGGCCAGGTACGCCAGGGTCGGCCCCGCGCCTGTAAGCGCGGTCGGCCCAGGCGCAGGCCAGATCGGGGTGGGCCAAGCGGAGCCAGGCTAGAAGGAGTGGGCCTGTTGTGGTCAGGTCAGTCTCGGGCGGGTTGCGGGTGGGTGAAGTGCGGCGTGTCGATCTCAAGGTGTGGGGACTGTTGTCTTAGAACGTGGTTCGAGTTGGGGGTGTGGTCGGATGATGGTTCCGAAGGGTGATCACTCTGAGGTGATGACCGAGATGCTGCGGGACGGCGACTTGGTGGGTGACCGGTTGCTGCTCGGGTTGGCGGCGGTGCAGTTGCATGCGGTGCGGAGTGAGGTGCGGTGGCGGGATGCGGCGCGGGCGGCGGTTGGTGCGGCTCCAGGGATTTTGGGATCGACGACGGTGTTGGACGGGGAACGGTTGAGTCTTCCGGGTGGGCATGTGGGCTGGTTGCGGCGGGTGATCAAGGCGGATTTGC # Questionable array : NO Score: 4.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 95573-97971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABMCA010000006.1 Actinomadura sp. RB99 amrb99_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================== ================== 95573 27 85.7 33 .............AC........-C... CGGGCTCTCATCTGTATGAGTACCCGGAACCGG CACT [95583] 95637 27 75.0 88 ...A.........AC..-.....CT.C. TTCGGGGGAGGCCGGCGCGCAGGCCCTTTGGATGTCAGCGCACGCGGGGATCGTTCCCCTGACGAGCCCAACCCCGAGATTGAGACCA 95752 28 82.1 33 ...A......T...C........C..C. GCGAGGTCCTTCTCCTGGGCCTATACCTGCCCC 95813 27 78.6 33 C.............C..-T....C..C. GGTGGCCTTCACCGTCGCCTTGCGGTCGGTGGC 95873 28 78.6 33 C.......T...T..........C..CG CCTCGTTAAGATCGTGTCGAACCTGGCGGCGGC 95934 28 78.6 33 ...A.........AC.....T..C..C. CCTGCTGTACGGCATCCGGGAGACCGGGTTCAC 95995 28 89.3 33 ...A.........AC............. GCAGCCGTCCACGCCCGCGGGGGACGCTGACAC 96056 28 100.0 33 ............................ GTAGCGGGCGATGTAGATCTCGCCGGCGTCGCT 96117 28 96.4 33 .......................C.... GCGGACCTGCAGCCGGGCGACATCCTGTTCTTC 96178 28 96.4 33 ...................A........ CGCCACCACCGCCGTAGCCGTGGCGATGGCGGA 96239 28 100.0 33 ............................ TCCCGGTTGGTCCACGTCAGGGGGATCGCGGAG 96300 28 100.0 33 ............................ TGGGCGCGCAGCCTCGCGGGCGCGGTGTCGAAG 96361 28 100.0 33 ............................ GCACTGCCCGCCGCCGACCGTGCCACGCACTAG 96422 28 96.4 33 ........T................... CGCGCACATGACCGACGCCTGACCCGCCGCCCC 96483 28 100.0 33 ............................ GATGGTTGGGATCTGCAGGAGGGCTGCCTCTTC 96544 28 100.0 33 ............................ CCGTGCTCCACCCGGCCCGGCAACGCCTGGACC 96605 28 96.4 33 ....................A....... CGGCACAATGAAGTTGATGACCGCCATAACGCC 96666 28 100.0 33 ............................ GAGGTCGCCGTACAGCAGCGCCAGGTGCCTCAT 96727 28 92.9 33 .........................CC. GCTCGTCGGGCCGCCGCCGTACCCGCCGCCCGT 96788 28 92.9 33 .........................CC. CCGCGACAGGGAGCGGATGAGGGTTGCCCAGTC 96849 28 92.9 33 .........................CC. GCTGCTGCTCGCCACCGACACCACGGGCCGGCC 96910 28 92.9 33 .........................CC. CGCGCAGGCGACGGCGAAGCGGGATGCGTCCTG 96971 28 92.9 33 .........................CC. GCCGTATGGCTGGACGCGCTCGTCCGCCTGGCC 97032 28 92.9 33 .........................CC. GCTGGTCGACGGTTCCCGCCAGATGCTTCTGCT 97093 25 89.3 35 .........-...............--. CCCTCGCTCACGACCTCGTCCTTGGTCCGGCCCTC 97153 28 100.0 33 ............................ GTGGGCTCTGCCGTGGACGCTAGCTCCCGAGCA 97214 28 92.9 33 ..............C...........C. CCACGTAGCGGTCTTCCTAGGGACTCCGAGAAG 97275 27 89.3 33 .........A.A...-............ CGCCAACGACCGGCTCCACTGGTCGAAGCGGAG A [97288] 97336 28 92.9 33 ..............C.........A... CATGGCGGCCGCTGAGGACTGCGGTTCGGAAGG 97397 28 92.9 33 ............G.C............. GGGCATTCGCTCCGCGTGGAACACGGTGGCGGT C [97399] 97459 28 89.3 33 ...........AT............C.. CCCCGCCGCGGCGGCGGACCTGCCGGAGGGATG 97520 28 89.3 33 ..............C.T...A....... GGCGGAGAAGGGCGAGGACACGCCCGTCAAGGC 97581 28 96.4 32 ..............C............. GCCCTGCTCCGAGTGTCCCCCGTGCTCCCGTA 97641 27 89.3 33 ...........-..C....C........ TTCCGCCCATATGGCCGCTATGACGCCCCCGCC 97701 28 85.7 33 .CA........C..C............. CTCGTTACGTGACGGGCGCTGTCCAGGCAGCGT 97762 28 89.3 33 ........G....AC............. GGCGATCATCATCCCGACTGGCTTCGCCGGCGC 97823 27 92.9 33 ...-...........A............ GCACGAGCAGTACCACGTCCCGCAAGACCGTCA 97883 28 100.0 33 ............................ CTTGATCAGGTAGTAGTAGCCAGCGGGGCTGCG 97944 28 89.3 0 .G.........A..............C. | ========== ====== ====== ====== ============================ ======================================================================================== ================== 39 28 92.0 34 GTCGGCCCCGCGCCTGCGGGGATGGTTC # Left flank : GATGCAGGAAGTGTTCGGTCCCCTGCTAGCGGTCTGAACGGGGCGGTCGCGGACGACTCAGGCGATAACCGGGCCGCGTTCGGGCCGCAGCATCAGCGACCTGCACACCGGCTCCGCAGCCCCGACCAACTCCGCGGCTTCTTCACCGGCCTGGACCTCATCGACCCCGGCGTCGTGCCCGTACCGCACTGGCGCCCCGACCTCTCCCCCATGCCCCCAGACACCGTCGACGCCTACGGCGGCGTCGCCAGAAAACCCTGAGCCACCACCAGCCGCCCCACGACAACGGACGTTCCCCCGCAGAAACGCGGCCCATCTCGGCTAACGCAACCTCCAGGCTCCATCCCGTCTGATCTATGCCGATCGCCCGGGACCACCAAATACAGCGCGGCGACACAACCAGCACCAGCGCCCACTGCCCGCTCCTCCCTGGCACTGATCTCTCAGTCGACCGGGCAGGATGGTTCGTACTTCGCCAGCGGCGCGTCCTGATCGCGGGC # Right flank : CCGTCGAGGACGCGTATCGCAGCGTCCAAAGAACCCTTGACAAACGAGAAGAGGGAACGTCCCGTACTACGAGAGGTTCGGGTTCCGGGTGACGCGGGAGCTCGCCATGCCGGGCCGGGGCTGCCCGCCGGTGTGGCTGATGTGGCGGGATCCGGACGGCGGCTGACCGAATCCCGAGACTCGGGCGCACCTTCGGTTGAGCCGCTGTCATGGCCGGAAACGGCCAGCTCCGCCGAGGGCGGTCCCGGCGTGCGTGGCGGGCCGGCCATGCGGGTCCCGGCGCGCCCGGCCAGCGCTATGGCGATCGAGGTGAGCACACCGCGCAACGCGCTCGTGCGACAGGCATACCGCTGGACCAGTCCGTCGACCTGCTCGGCGAAGATCTCGCGCTCGCACCTGGTCCTGCCGCACAAGAACCGGCGCACTTCGAGCTCGATCAGCAGCGGCCGTCCGCACGCCTCCAGATCCCGCAGGGTCCGCCGGTAGCGGTCCGTTGCACA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [29-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //