Array 1 46484-43276 **** Predicted by CRISPRDetect 2.4 *** >NC_006366.1 Legionella pneumophila str. Lens plasmid pLPL, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 46483 28 100.0 32 ............................ TTTTAAAAACCAATTTTTGCCGTGGCTCGATG 46423 28 100.0 32 ............................ TAATGCAGAATTAGGAGAAAAAACAATCTTAC 46363 28 100.0 32 ............................ AGTTTGCGTAAAAGATTTTCTAATGATCCTTC 46303 28 100.0 32 ............................ TGTAGTACCTGATCCCATACAAAAATCTAACA 46243 28 100.0 32 ............................ AAAATAATCCGACAAACTACCATTCGCATAAC 46183 28 100.0 32 ............................ TTGGCCTCAGAAAGGCCCTGCTGTTGAGTTAC 46123 28 100.0 32 ............................ TTTTTGCATGTAAGGCTTATCCCACTTGCCTA 46063 28 100.0 32 ............................ TATGTACATGGCCGCAAGTGATTCAGCCTTTA 46003 28 100.0 32 ............................ TTGCAATAATTAATTTGTAACTGAATTGTAAA 45943 28 100.0 32 ............................ TAGCAACATCAGCATTTATAACTCTCCTAGCA 45883 28 100.0 32 ............................ TGGTGTTGCTGAGGCTAAACCCCCCGATGTTG 45823 28 100.0 32 ............................ TGTAAACAATCCTTTTAAACTGCCTAAAACAA 45763 28 100.0 32 ............................ ACATTCGGAACTTCGATTGTTCTTATATGGTG 45703 28 100.0 32 ............................ TTTTTGTTCCAGCTTCTAATTTCCTATACTCT 45643 28 100.0 32 ............................ TATCAGACTTAAACGAATCTCACTATAAAACA 45583 28 100.0 32 ............................ GGCGTATAATTATCTCGTATGTATTGCTCTAA 45523 28 100.0 32 ............................ AAAATTGTTTTTCTGCTCAAGAGATGGGGAAC 45463 28 100.0 32 ............................ CACTCGATGGGGTTTTCGGAGAATCATTCAGC 45403 28 100.0 32 ............................ ATTACCATTTTTTTAATCTGCTCAGATAATGG 45343 28 100.0 32 ............................ TTCCAGCTCTAATATTTTACACGCATCATATT 45283 28 100.0 32 ............................ CTGCGGGCTTGGAAATGATGAAGGCTGTTAAT 45223 28 100.0 32 ............................ TGTCTGCCGTGTCGCCGCCGCCAGAACCTAAC 45163 28 100.0 32 ............................ AATTGAACAGATAGTTGAAGAATCAGTAAAAG 45103 28 100.0 32 ............................ TTCTTAGTCCCTTTACACGCTGGGCATCTAAT 45043 28 100.0 32 ............................ TTGAGAGTTGCTCTTATGGCCTCTTTTGTAGA 44983 28 100.0 32 ............................ TAATTCATGAACGATAGGGTAGGTACTAGCAT 44923 28 100.0 32 ............................ TCATTTTGAACTGTAAATAAACCTTTCGTTAA 44863 28 100.0 32 ............................ ACTGTGGTGAGTATGGTGAGAAGTACGGAAGA 44803 28 100.0 32 ............................ ATGTGCACCTACACCGTGAATGTGCCGGTATT 44743 28 100.0 32 ............................ TCTGAGCTTGAGCAGCTTGAAAAACAAATACA 44683 28 100.0 32 ............................ AAAACGTGCTCCACCATTTAGTTGACGGGTCA 44623 28 100.0 32 ............................ GCTTGTGCCATGCGCTTAACTATTGCCCTTTC 44563 28 100.0 32 ............................ GATATGTGAAGAAGCAAAGCAAGTAATTGCTA 44503 28 100.0 32 ............................ TACTAGCCCTTAGCTATGACGAGCTCGACCAG 44443 28 100.0 32 ............................ GATTGAGATTTCAGTCGAATATATTTTACCTG 44383 28 100.0 32 ............................ TGCCCTGAACTTAGATTAATAATTACTCCATG 44323 28 100.0 32 ............................ GCTTGCACTTAGTAGGTAACGCTATCGTCAAT 44263 28 100.0 32 ............................ TATAAAATTTAATTCAGCGTCATATACCGGCG 44203 28 100.0 32 ............................ TCAGCAGCAAGACCCGGGGTCTGCAACTCAAG 44143 28 100.0 32 ............................ AAAGCCGCCGACATACGCCCTAAACTTGGTGT 44083 28 100.0 32 ............................ TATCTATTTAGATATAGCCTTCTTTCTGTAGA 44023 28 100.0 32 ............................ AGCAGTTCCAGCAGCATTTGATGGCTTATAAG 43963 28 100.0 32 ............................ ACAAGAGGCGCAACTAAACCTAACACAAATGT 43903 28 100.0 32 ............................ GGAATTTGTCGGCCGCATAGACCGCTTTTATC 43843 28 96.4 32 ...............A............ TTAACAGTTAATCTTTCAACATCAGATAAACT 43783 28 100.0 32 ............................ TTACCTCATGACTTGCTTTCTAACCTTTGCGC 43723 28 100.0 32 ............................ TGTCCGCCGTGTCACCGCCTCCGGAACCTAAC 43663 28 100.0 32 ............................ CAATTCGAACAAAACATAATCCTCAGGATTCT 43603 28 100.0 32 ............................ TGCTGGATTGTGCCCCAAAGCAAACAGAGACA 43543 28 100.0 32 ............................ AATACGTGGTTATGACCTCATCTAAAGACGTA 43483 28 100.0 32 ............................ ACATGAAGATAAAAAAACGGGCAAAAAGACCT 43423 28 100.0 32 ............................ AAATGCCGACAACGGCGCTTAAAAGGTCTTCT 43363 28 100.0 32 ............................ GCGATATTTTTAATCAAGAATTCGAAACATAT 43303 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 54 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGGCACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTATAACTATTTTTTTAAGATTTAGAGCAGA # Right flank : TTATTATGTTAAAGGTGTTAGCACGCTACGCAGCAAGGTCGGACCAAGGCCTGACCTTGTTTTGATTAGGAAAGTCTAATCATGACTATAATCTCCATTTCTCTTTATGGAGTACAGCAACCGTTAGTCAAATCTATAAATAACCTAAACAAATAAAAATAAACTCTCTAGTTCCATGGAAATGAGTGTAATTGGATCGAAGTCAAAATAAATTGTGAAGTCTGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGAATCATGAGAATAATCTAATGGTGTACGTTAATTATACACGTATGCTAAAAATTACTACCTGATGAGCTAGGATATTCTCTACCGCGTTGTTTGAATCACACTGAGTCAATCGTAAATTTATTTAGCATTACTGAGAATTATTTAATCCTCAAAAACTCAATAATAAATTTAGATATTTCACAAAATCATACGGTGAATGCTCTCCTGGTTTCGTCAGTTACTGAAATAGTGGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3243127-3246276 **** Predicted by CRISPRDetect 2.4 *** >NC_006369.1 Legionella pneumophila str. Lens, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3243127 28 100.0 32 ............................ TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA 3243187 28 100.0 32 ............................ CGATGAATCAACTATCAATAGATGGCGTTTAC 3243247 28 100.0 32 ............................ AATAAACAAAATTTGGAGTTAAATGTGAATGA 3243307 28 100.0 32 ............................ TTCAGCACATCATATGCGCAGTTAATCAACTT 3243367 28 100.0 32 ............................ ATACCGACACATTTTAATGGGATGGGGTGTCT 3243427 28 100.0 32 ............................ ACTTAATATTACCGAGCTAACATCAGCTAAAA 3243487 28 100.0 32 ............................ TATCGCAAGGCGTGTTCTTTGTATCATCCAGA 3243547 28 100.0 32 ............................ TGAAAAAACATTACACAATGATTCTACTATAC 3243607 28 100.0 32 ............................ ATTACACATATGACACTTAATCATTATCAATC 3243667 28 100.0 32 ............................ ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT 3243727 28 100.0 32 ............................ TGTATCCACTGGAGACTCTCTTCTAATTCTTA 3243787 28 100.0 32 ............................ TGCTGAATCAAATTGACGCCTATAAGTTAAAT 3243847 28 100.0 32 ............................ TCTTTAACTTCTCTAATTATAGTACTGTTATC 3243907 28 100.0 32 ............................ AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT 3243967 28 100.0 32 ............................ ATCTGCTTCATAAATTAAAAATGGAGAACTAG 3244027 28 100.0 33 ............................ CACCATTAACAGTTCCTGCGAGTACCGGCACCA 3244088 28 100.0 32 ............................ ATAACAGCGCAAGAGATTAAGGGATAGATAAA 3244148 28 100.0 32 ............................ TTCTCAACACAGTCTTTTTTGCCATCTCTTCA 3244208 28 100.0 32 ............................ TATACCGACTGCGCTTCCGGTGGTTCTTTGTG 3244268 28 100.0 32 ............................ AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA 3244328 28 100.0 32 ............................ ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC 3244388 28 100.0 32 ............................ ATAGTGAAAGTAACATAACCACGAGCAAAAAG 3244448 28 100.0 32 ............................ TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA 3244508 28 100.0 32 ............................ TCTGATAGCGCAACGGCACTGGCCACCCAGCA 3244568 28 100.0 32 ............................ AGACAAGACTGGAACAATATCTCCAGCCTGTA 3244628 28 100.0 32 ............................ ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA 3244688 28 100.0 32 ............................ AGGCAGTCGGAGAGCAGGAAAACACGGAAATC 3244748 28 100.0 32 ............................ GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC 3244808 28 100.0 32 ............................ ATTTGAAAAATCTATCCCTAAATCTTATGTAC 3244868 28 100.0 32 ............................ TCTTTGAAATGACAAAAAGGTATTATGAGTAC 3244928 28 100.0 32 ............................ ACAAGAAAGCGTGGACTTAATAGAGTTACTAG 3244988 28 100.0 32 ............................ TTCCCACGATGCCAGCGAGCAAGAAACAGAGG 3245048 28 100.0 32 ............................ GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG 3245108 28 100.0 32 ............................ ATTTCGCCTTCAACGTCATGCGATAAATTTTT 3245168 28 100.0 32 ............................ GCTTGAACTTCTGCGACTGCTCTATCGGATTG 3245228 28 100.0 32 ............................ TTTGGCTTCCAATGGCGTTGTATTAACAAAAA 3245288 28 100.0 32 ............................ AGTCGCAACATTCCCGATTGACAAGTAAAGAC 3245348 28 100.0 32 ............................ ATATTCTGTTTGACCAAAGCAATCATTTGAAT 3245408 28 100.0 32 ............................ TACAAGTCAAAATTTTCTATTTCTTTGACAGC 3245468 28 100.0 32 ............................ ATAGATGTTACGTTAGACCAAAGTCATTTGGG 3245528 28 100.0 32 ............................ TTGCAGCGAAGGAGAAGTGCCATAATGTACAA 3245588 28 100.0 32 ............................ TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA 3245648 28 100.0 32 ............................ TTCGCGTCTTTAATCTGTATATTCGGGTGTTA 3245708 28 100.0 33 ............................ AATAAGGTCGAACTGCTACACTAAGTTTACACC 3245769 28 100.0 32 ............................ ACTACATTCTTTAATACTTGTGCCATTTCTTA 3245829 28 100.0 32 ............................ AAATAACCGGATTGAACCTTCCCGAATAACAC 3245889 28 100.0 32 ............................ TAATGCAATTATCATGAATAATACTATGCACT 3245949 28 100.0 32 ............................ ATTACGACAACATAGAAGGCATAACCACAAGG 3246009 28 100.0 32 ............................ TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT 3246069 28 100.0 32 ............................ GCTGCTTATATTGGCGGCGACCTTTAAGATTT 3246129 28 100.0 32 ............................ TTACAAAGCCTGCTGTATGCGTCTTTTAATAA 3246189 28 100.0 32 ............................ TTGATGTTCGTGCGCCCTATTCGCAGTTATTA 3246249 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 53 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACACCTTGACAGAGGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAGGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAATGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAAGTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAAAACAAGGTAAATTCCTTGAATTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : ATTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAAGTTCACTGCCGCACAGGCAGCTTAGAAAAGTACCACGGCACAAACACCGCCTGAAAGTTGGTTCACTGCCGCACAGGCAGCTTAGAAATACTACGTCCTTAGCTCTTAAGTCTTTTGTGCGTTCACTGCCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3246643-3247392 **** Predicted by CRISPRDetect 2.4 *** >NC_006369.1 Legionella pneumophila str. Lens, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3246643 28 100.0 32 ............................ AGTACCACGGCACAAACACCGCCTGAAAGTTG 3246703 28 100.0 32 ............................ TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC 3246763 28 100.0 32 ............................ TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC 3246823 28 100.0 33 ............................ CAACAGACACGACAGGGTAGGGTTGCCCACAAA 3246884 28 100.0 32 ............................ GCCATCATGATTACTAAAGTCGATTGTGACCC 3246944 28 100.0 32 ............................ CAAAGTGTACGGAGATAGACCGCAAGACGACA 3247004 28 100.0 32 ............................ AATATAAAGCATCGGGAAAATGTAGACAAAAT 3247064 28 100.0 32 ............................ AAATGCACGGCGCAAAAGTCAGAAAACAGCCT 3247124 28 100.0 32 ............................ AGACAGAAATCCGGCTGGGCTAGAAATGATGA 3247184 28 100.0 32 ............................ TCTTGCCTGCTCTTAACTACAACTCCAGACCA 3247244 28 100.0 32 ............................ AAACAACCACACCTCCCTTTTTAGTTAATCTA 3247304 28 100.0 33 ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 3247365 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCAGCTTAGAAATTACAAAGCCTGCTGTATGCGTCTTTTAATAAGTTCACTGCCGCACAGGCAGCTTAGAAATTGATGTTCGTGCGCCCTATTCGCAGTTATTAGTTCACTGCCGCACAGGCAGCTTAGAAATTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAA # Right flank : GTTATTATGTTAAAGGTATTGGCACGCTACGTAGCAAGGTCAGGCCTTGGTACGACCTTGTTTTGATTAGGAAAGTCTAATTATGACTATAATCTCCATTTCTCTTTATGGAGTATAGCAACCGTTAGTCAAATCTATACATAACCTAAACACATAAAAATAAACTCCCTAATTCCATGGAAATGAGTGTAATTGGATCGCAGTCAAAATAAATTGTGAAGTATGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGGATCATGAGAATAGTCTAATGATGTGCGTTAATTATGCATATATGCTAAAAATTACTACCTGATAAGCTAGACAGTGTCGTCAAATTAACTTCCCCATAGTTCAATACACCTGATTTGTACTGCAGCAAGAAAAGAAGAGGTGTTTTTTGCATATCTTGTGGCAATCCCCTCCAACGTTTGAGATGGGGGAAGGCATTCTCCACCAGATGACGAAGTTTATAGATCGCTTTATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //