Array 1 16196-17904 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386560.1 Carboxydothermus ferrireducens DSM 11255 CarfeDRAFT_scaffold_32.33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 16196 30 100.0 40 .............................. ATACAAAAAGATCAGCCAATACCAAGAGACCCAGTAACAA 16266 30 100.0 37 .............................. TATTAAAAACGTTTTTTATGGCCTTAAAACTGTTTTA 16333 30 100.0 36 .............................. AGGGGCAAGAGGAGGGTAAGCGGTTTTTGTTTTAAA 16399 30 100.0 37 .............................. TCAAAAATAAACCACGAAACTGTTGTTGAAGCCTTAA 16466 30 100.0 38 .............................. GATTTTTATAAACCGGGAGCCATGTATTTTGTACCTTG 16534 30 100.0 37 .............................. CGGCCTGTTTTAAAACTGCTGGCGACCATGGCAAATT 16601 30 100.0 36 .............................. GGTGGAAAGTTGCACGCTGGTCGGCTCACCCACAAC 16667 30 100.0 37 .............................. GCTATCAGCGGCATTCAGTCCGTGATTTACTACGACG 16734 30 100.0 38 .............................. CCTTAAAACGGCCAGTCTCCTTTTGGTACCGGAAACCT 16802 30 100.0 36 .............................. CAATCGTTACTTTGAATGTTTTGCCCGTCAACAATA 16868 30 100.0 35 .............................. GTTAAAAATGTAAAAAGCTGGCAAAAAGCCAGCGC 16933 30 100.0 38 .............................. TTTTTGCACTTTTCGAGATTCTATAAAACCCCAGCCCT 17001 30 100.0 37 .............................. ACATTTCAATTAGCAAAGACTTAGCTGAAGAAATTAA 17068 30 100.0 37 .............................. TTTTTGATGTAGTCAAGCATGAGCTGTCTGAATAGAG 17135 30 100.0 36 .............................. AGCCTCGTTAAATCTTGCTCTGTGAAGGGTGTTAAT 17201 30 100.0 39 .............................. TCGGTAACAAAATTTAATGAGAAAGGAGGTCTTATTTGA 17270 30 100.0 38 .............................. GCGGGAGCAAACAAAAAAGAGTAGAACCAATCTATTTT 17338 30 100.0 36 .............................. CTTAACGCGCAGGGTTGTAGTTTCTTTACTGCCACC 17404 30 100.0 37 .............................. ATGCAATGCGCTAAAGAATTACCTGCCCGCAGATGGA 17471 30 100.0 38 .............................. AAAGGAGGTAAGAATATGAGATTGGCAGGAAAAATCAA 17539 30 100.0 35 .............................. TCCAAACAACCGCTTGCCAGTAACATTGCTAAATG 17604 30 100.0 37 .............................. TTAAAAACCATAGTTCTAACGAACAAGCTCCCTTAGT 17671 30 100.0 42 .............................. CGGGATCCTGTTACTAAAGATGACCCTATACCTAGGGATCCG 17743 30 100.0 36 .............................. CTCCATCATCTTTGGATAGTCCCGGGCCAGCGTTTG 17809 30 100.0 36 .............................. TTGCTCATCGTTTTCGCATTTCCAGCCAAACCATTG 17875 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 26 30 100.0 37 GTTTTAATAGAACCATTCTGGGGTGGAAAC # Left flank : AATAAAATTAGAAGCCTATCGATTGATAAAACATTTAATTGGGGATGAAAACTACCGGGGATTCAGGGCGTGGTGGTAAGATGTATGTTATTATCGTTTACGATATTGGGGAAAAAAGAGTAGCCAAGGTGTGTAAGTTTTTAAGAAAATACCTAAACTGGGTGCAAAATTCTGTGTTTGAAGGGAACTTAACCGAAAGTCAGTTTGAAAAAGTAAAATATGGGCTAAAAAAATTAATTTGTGAAGAGGAAGATGCAGTGCTGTACTACGTTTTTTCAACTCCCAAGTGGGTGGAAAGGGGAATTTTAGGTAAGGAGAAAAATCCGATAAGTGATTTTTTGTAAAAAAGAGCAGGAAAATTCGGAATAAAAGCGAATAAAAAGTGGCAAAGGAATAAAAAAGTCGTCGCTGCCCGGAGTTTTTTGCACTATCGGAGGTCGACGACGATTTTAAGGTTTTCACCTCCCTGAAAGCCTTATTTTTTAAGGCTTTCAGGATGG # Right flank : CATTACCGGATTAATGTAAGTATTTATAATTTGCTGAGTTTTAATAGAACCATTCTGGGGTGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTAATAGAACCATTCTGGGGTGGAAATTATTATGCTGCTTATATAACTCCGGTTGTAATATCTACGTTTTAATAGAACCATTCTGGGGTGGAAATATTCTGTTTAGTCCTGCCGTCAGGTTAGCCATAATTTGTTTTAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATAGAACCATTCTGGGGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 18261-18763 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386560.1 Carboxydothermus ferrireducens DSM 11255 CarfeDRAFT_scaffold_32.33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 18261 29 100.0 39 ............................. TTATTATGCTGCTTATATAACTCCGGTTGTAATATCTAC 18329 29 100.0 38 ............................. TATTCTGTTTAGTCCTGCCGTCAGGTTAGCCATAATTT 18396 29 100.0 39 ............................. CAATAGAGCTTTTGCGGAAATTCCTAAAATAAAAGTACC 18464 29 100.0 37 ............................. CGGGTGATAAGCGGTATCACTGCAAAGCCAGAAATTG 18530 29 100.0 39 ............................. CGCGATATGTATTTTTCACCAGCGATATTATGTCCGTGA 18598 29 100.0 39 ............................. CCTGGTACAGGACTGTTCGGGAAAATGATAATTTTATAC 18666 29 100.0 40 ............................. CCACAGGGTTTACCGCACCAGTCGGAGTGTACCATTTTAG 18735 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 8 29 100.0 39 GTTTTAATAGAACCATTCTGGGGTGGAAA # Left flank : TGGGGTGGAAACCTCCATCATCTTTGGATAGTCCCGGGCCAGCGTTTGGTTTTAATAGAACCATTCTGGGGTGGAAACTTGCTCATCGTTTTCGCATTTCCAGCCAAACCATTGGTTTTAATAGAACCATTCTGGGGTGGAAACATTACCGGATTAATGTAAGTATTTATAATTTGCTGAGTTTTAATAGAACCATTCTGGGGTGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACCTACAGCTTTAGCCGTATTTGCCCAGAATGGTGTGAATTTGCAAATTATTTAGGCACCGATTTTTCAAAATAAATTAGCATAGAAGGCAGCTGTAATCTGTAAAAATTGCAAATTATTTTAGTAGGTCAGTATAGACTTTTGCAAAATATCACGGTATTTCAGCAAAGAAAAATAAAAAGAAAACCGGCCGCAAAAGTGCGACCGGGCAAGATCAGAAACCAGTATCCTGAGCAGCTAACCTAACCACCTCAGCATCAATGATTTCCTTTTTAGCCTGGAACCCATAAAGCAAGCAATGAGTAGCAAGCTTATTGATTAGCCGGGGCCAACCCCGGGATAAAGAGGCAATAGCTTCGATGGCAGGCTCGGAAAAAATATTATGGTTAGCTCCTGCAAGCTCCATATGATGCTGGATGTAGCCTGCTACCTCTTCCCTGGTTAAAGGCTCAACCTTATAACTCATGGCAATCCTTTGGGCAAGAGGCCTATTCTGATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATAGAACCATTCTGGGGTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 24430-23405 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE386559.1 Carboxydothermus ferrireducens DSM 11255 CarfeDRAFT_scaffold_29.30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24429 30 100.0 37 .............................. AAACGTCCCGAGCGCTCAAGTTTATTAAGGCTTCTAA 24362 30 100.0 36 .............................. TGAATTACCAAAGAGAGGATGGAAGCTAAAGAGTTT 24296 30 100.0 35 .............................. TTGGCGTTGGTTGAGTAGTCGGTATGGTCAGTTTA 24231 30 100.0 38 .............................. TCATATGCCTCATGGTCAATATTTACCGCCCAATACTT 24163 30 100.0 36 .............................. ATCCGATTGTACCCCAATCTAAAACTTTTACAAAAA 24097 30 100.0 35 .............................. TAGGGGGAGTATAAAAATGCTGGATGAGGTGGAAA 24032 30 100.0 35 .............................. ATAAATCAACAATAACACTCGAAAATGTGGAAATA 23967 30 100.0 35 .............................. CAGACACCCCTAAAATAGTAGGATATCTTCCAGAA 23902 30 100.0 35 .............................. TGCCACAGCGTGAACAAAACCTACCGCCAGAAATG 23837 30 100.0 36 .............................. CACGTCAGCATAAAATTCTTTGGTTTTGCCACTTAA 23771 30 100.0 39 .............................. ACGATTACTTCCGGCTTGGAAGAGCCAGCGATGTCCACG 23702 30 100.0 37 .............................. CATCGAAGAAGTCGGCTTCGGTAGTGCCGTCCTCTTT 23635 30 100.0 38 .............................. ATCAATAAAAAAGCCCATACTCCTACCCTTGAGTAGGG 23567 30 100.0 36 .............................. AACAATAAAGGGGACCAGTCTCCTCTTAGGCCCACT 23501 30 96.7 34 ...............A.............. CAACCAGGAACATCAGGACCCCATGATAACGCAG 23437 30 93.3 0 ......................G......T | T,A,G [23408,23410,23412] ========== ====== ====== ====== ============================== ======================================= ================== 16 30 99.4 36 GTTTTAATCGAACCATTCTGGGATTGAAAC # Left flank : TGAAAAAATTGAAGTTGCTGTTAAACCCT # Right flank : AAAAAACATAGGAGGAGTTAGCAAAGCAAGTGATTATCTAAAGGACAAAGAAAAAGCTGGAAAACTTTTGGAAGATGTTATGAAAAAAGCAAAAAACCAGGGCCCTATTGGAGAAATATGGGACAAGTTAACTTCAATGATTGGCTTGTTTAAAGATTGGATAAATGGAAATTACAATGATGTTTCAACAGCAACGATTTTAGCAATAATCATCGGACTTATATATTTTGTCTCTCCGGTTGATACTTTGCTAGATTTTATACCTTTAGCAGGCTATGTAGATGATGCTTTTGTCTTAGGTTTAATTTTTAATCAGGTAAAATCTGAAATTGAAAAATATCAAGCATGGAAAAATAAAAACTAAATTCTTAGGAACTAAGTTGACTCAGAAGGGTTTTCCTTTTGAGTCTTTTTTTATTGGAAAAAATTTTTTTTGGGGTGGTGATTAAAATTAAGAAAAAGTTCTGAGGAGGATGAGATTATGACAAATCAATTTTTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAACCATTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1485-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYG01000044.1 Carboxydothermus ferrireducens DSM 11255 CarfeDRAFT_scaffold_39.40_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1484 30 100.0 36 .............................. AATGAAAAGGTGGTTTGCTTTGCTCTTAACCGTTGC 1418 30 100.0 36 .............................. CGGCAAGATACCCAATCTAAAGAAAACGATTTTCTT 1352 30 100.0 36 .............................. TTTCAACGCCCACATCAAGGCGTATTGCTTTCCTCT 1286 30 100.0 36 .............................. GCGAGTAGCTAAGATAGTCTTTTCCCGGTTAATCAA 1220 30 100.0 36 .............................. CCGAATAACATAATAATCATTTGTCTCTACATTGTC 1154 30 100.0 38 .............................. AATTACCGGATAAGTGGCAAGAAATCAGAACAAAACTT 1086 30 100.0 37 .............................. CCAATTGTGAAATCGGTTGGCGATGCAGTAGCAGCTT 1019 30 100.0 37 .............................. CTGCCTATCGATTGATTAACTGCTTTAGCACATCCTC 952 30 100.0 37 .............................. CTAAAATTTATGATACTAAAGCTTTTGTAAAGGTTAG 885 30 100.0 36 .............................. GAGAATATTAAACCTTCAAAACCTTGAAAAACCTTA 819 30 100.0 37 .............................. CTTCTGAAATATTTTTCTCCTTCATATACTCCTTTAG 752 30 100.0 36 .............................. TATTTCCGCCCCGGGTTAAGGGACTGGCGGTAATCC 686 30 100.0 36 .............................. ACAATTAATTAACATTCTCTTAACATCTTCTTAACA 620 30 100.0 35 .............................. TCAGAACGTGGTGGTTTTAGTTTACGTAAAGGTTA 555 30 100.0 36 .............................. TTGCTGCTGTTGCTGCTGTTGCTGCTGGTTCTATGA 489 30 100.0 37 .............................. TTCGTAGACCAGTCTCAAGCACCACCGGTACAAGCTA 422 30 100.0 36 .............................. ACATTTTCTTAACAAAAAGGTATTGCACTTTTTCTG 356 30 100.0 36 .............................. GCTTAATATTATCATAATAATTATGGTTTATAATGA 290 30 100.0 36 .............................. CTTAGCTTACAAGGTTAAGAATCTTAACCTTGTAAG 224 30 100.0 35 .............................. CTCATTGACCTTCCTTCTTTCGTTTATTTGTTTGC 159 30 100.0 37 .............................. CCCTGTATACTTTTTTGATTAACCCTAATCCTGCTTT 92 30 100.0 35 .............................. TTCGATACAGAAACACATCAGGTTAGGAAGGAAAA 27 27 90.0 0 ...........................--- | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 99.6 36 GTTTTAATCGAACCATTCTGGGATTGAAAC # Left flank : AACTCGGTTTTGGAAGGAGAAATTACCGAAGCAAATTTTCGTCGGTTAAAAGGTGAACTTTCAAAGATAATTAATCAAGATGAGGATTCAGTGCTGTTTTATATTTTTGGTTCCATGAAATATTCTACCCGGGAGCTTTTGGGTATTCAGAAGGGAGGTGAAACCAATATGCTTTAATTGTGCCTTGTATGTGAAACATTGAACTTTACCCATTGAGGTCGACGAAAAAAGTGCATATACTATGAATAAATGTTTCAAGAAGATTTAAATTCCTCCGGCAAAAACAAAAAATTATGCAAACAAACTAAAAAATATACAATGATTTTCGTCGACCTGCGGTTGCCCCAAAATCCCGGGAGGTCGACGAAAGGGTGAAAATAGCCTTTGAGCCTTGAGAATTAAGTGGTCGATGGAAACTTGCCACTATGCACCAATATTCACATAAAAAATGTAAACTTCTTCTTTCGTTAAAAATCTTTTTCTTTTATAATTAATTATGG # Right flank : A # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAACCATTCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 8546-9509 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYG01000045.1 Carboxydothermus ferrireducens DSM 11255 CarfeDRAFT_scaffold_40.41_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8546 30 100.0 39 .............................. TGCTAAATGGCAGTTCTTACCCTTCTACCGTTAATAATT 8615 30 100.0 36 .............................. GGGGAATTTAGGGGAAGGTAAAACTTTTGGTATGAC 8681 30 100.0 39 .............................. ACGAAATTGAAAAATACTGGGGAGTTACAACAGGAGCTA 8750 30 100.0 36 .............................. TATATTTGGATGCTTGGTATAACAGAAGTTATTTTG 8816 30 100.0 35 .............................. GTGTTCGCAAGCTGAATAATCGAACCAGCCGGGCA 8881 30 100.0 37 .............................. AAAAAATCGGCTAACTTAAAAAGCATTTCGCCGCTTA 8948 30 100.0 36 .............................. ATATTATTTTTTATATTATTTTGGATTGGATTCGGA 9014 30 100.0 37 .............................. ATTAAAGGGGGTGAATAAATGAAAGAAATGTTTGTGG 9081 30 100.0 35 .............................. AAACTTTCGGCAATTTCTTTTGTTCTATCGTTGCA 9146 30 100.0 37 .............................. GAAGAAATATTAGATACCGATACAATCAATTTAATAA 9213 30 100.0 36 .............................. ATATATTCTTTAGTTACTGGATGATAATTATAAACT 9279 30 100.0 35 .............................. ACTGGAAGATATTATTTATCTCCAACATCAGCAAT 9344 30 100.0 37 .............................. TACTACCGGGAACCACACAAGCGGAGTTTGGGCCTCA 9411 30 100.0 39 .............................. TCTTCTTTTGCTTTCTGGGATAATAGAAGATATGGTAAA 9480 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 15 30 100.0 37 GTTTAGGTAGAACCATTGTGGGTTATAAAC # Left flank : AAGTATACAGCAGTTATGATTATGAAGTGTTTTTAGATCCGAGGATATATAACTATTTAAATGAATTGCTTACCGAAAAATATGATAATAAAGACTTAAGAAAACAGTTTTATGAAGAGTTTGACGGTATAACGGTATATCCTTTTGTTTTCAAGGATAAAGTGGTAGAATTAATAGACAGCAAGGATTTTTATGAGTTGGAACTTTATAAAATTTCGTTGAAGCTGGGAACTGTACAGGGATTAATGAAAAAAGGATTAATAGAACAGGAAAAAATAAATGGTATTCCGATAAATTTTGTAAAGTGCTATTATGACAGTGAAATTGGTCTGGACAAAAACAGACCACTGGAAATCAAAAAAGTAATAGAAAAAGATTTTATGTAGCACATATACATTGTGAATCGTCTCACAACAGGGATTTTTACACTATCGGAGGTCGACGACGATTTTGAGGTTTTCGTATCCTGAAAGCCTTATTTTTTAAGGCTTTCAGGATGG # Right flank : TGCGAGAATTATGGCGTCACTAACGTAGGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGGTAGAACCATTGTGGGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1909-1612 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYG01000051.1 Carboxydothermus ferrireducens DSM 11255 CarfeDRAFT_scaffold_46.47_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1908 30 100.0 37 .............................. CGTGGATACCGTCCAGCAGAGAACGGGTTCTTCGCCT 1841 30 100.0 36 .............................. GTTTTCCTGCTTCTTGCTTTTCTTCTTTTTCGGTTG 1775 30 100.0 37 .............................. GCCTAACAACTGCGGTTTTGGGATTGTTAAAAGAACA 1708 30 100.0 37 .............................. AATCTTTAGCAACTGTTCGTAAGAAAAGCTGTCGGGC 1641 30 83.3 0 ......................AGT...GT | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.7 37 GTTTAGGTAGAACCATTGTGGGTTATAAAC # Left flank : GGCATTAAGAA # Right flank : CCATATAATTGTGTAAAAAGGGGAATTTAAAAAAGGTTGAGCCATTCCCACCCTCTGGTTAGAATTAAAGGTGACCAAACCAAAAACCTAACTGGAGGGATGAGAAATGGCTCAATATAATATTACCATTGATTCCGAAATTTTGCATCACCTCTTTCTCAATGGAGCAAAAGATGAAGGAGTAGCTAAACTTTTAGAATCCGTGCTTAATCAAATACTCCAAGCCCAGGCCAAAGAGCAAATCAAAGCTGACCCTTACGAAAGAACTGACGAAAGACAAGATTATCGCAATGGCTATTATCCAAGAAATTTAGTTACCCGTGTAGGTACGCTTACCTTAAGAGTTCCAAGACTTAGAGAAGGTAAATTTACTACTGATATCTTTCGCCGTTACCAGAGAAGCGAACAGGCACTTTTACTGGCATTAATGGAAATGGTGGTTAATGGCGTATCTACCAGAAAAATTGAAGAGATAACTTATGAACTTTGCGGTACAGAGT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGGTAGAACCATTGTGGGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 59597-62750 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATYG01000020.1 Carboxydothermus ferrireducens DSM 11255 CarfeDRAFT_scaffold_17.18_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 59597 30 100.0 36 .............................. TGATGCAAAATGATATACTTCACCTGCTCAGCCGGT 59663 30 100.0 36 .............................. GGGGGCATAACAAATACCGGCGGGCAAGAGGAGGAG 59729 30 100.0 38 .............................. CTGGTTTAACAGTCTTTATAGCTTTTAAAAAGGCCTGC 59797 30 100.0 38 .............................. CAGATTTAAACATATGTTCACCTCCTTTCCGAGAAGAT 59865 30 100.0 35 .............................. AACTAAGTGCCCCGGTGGCGGTATTAATGCCGTGG 59930 30 100.0 36 .............................. TAAAAATATAGCTAAAAGCCTTGGCGCTGTAGGATT 59996 30 100.0 37 .............................. ATCGCCTCCCTTATTGTTTGTCTTTATCTTATCATAC 60063 30 100.0 37 .............................. TAGTAATATGTCTAACATTAATAACGCCATCAATCCC 60130 30 100.0 36 .............................. TGGCGAAGTGTGGCTCCCGGCAGTGGTAACACACTG 60196 30 100.0 35 .............................. GAGCAGCATAACATCAAGATCCGGAGTATGACAGA 60261 30 100.0 35 .............................. AGTGCAGACCAGTACACAACTGCGTTATGGCATTT 60326 30 100.0 37 .............................. CATAATGCGGCTCCCGGCAGTGATAGCAGGTCGCCTT 60393 30 100.0 36 .............................. AGTTTTGCGATAATTTAGTAAATAAAAGATGTTCGG 60459 30 100.0 37 .............................. GCTCACAATTTGGATTGGTACAGTAATTTCCATCAAG 60526 30 100.0 36 .............................. GGTTAAAATCTTTTCAAGCTGCTCAAAGTTCGACAG 60592 30 100.0 37 .............................. TAGGTGGGGTTAACTACCATGTTCCTTACCCGCGCTG 60659 30 100.0 36 .............................. ATGTTCACAGGACGGTAAACCGCTTAATAGACATAA 60725 30 100.0 36 .............................. TTGATGCAGTTGCTCAACTTGCTCAATGGTTAGCTA 60791 30 100.0 36 .............................. TCCATTTTTTTCCAGTTCCTTCCATAAGCTAATAAT 60857 30 100.0 37 .............................. TAAAATTTAAAAGCCCGCCAGAATAAAAAACTGGCGG 60924 30 100.0 36 .............................. TGCATCAAACAATCCTTCTACCCCTCTCCACACCTG 60990 30 100.0 39 .............................. GGGCGTGCTCCCCGCAAGCAAGATGCCCACGGCGGCGCA 61059 30 100.0 36 .............................. GGATAACTGGGAGGTGTATAAAGTTCTTACGCTTTA 61125 30 100.0 36 .............................. TGCAAAACGAATGGCTACCAGACTCCGGGGTCGGTG 61191 30 100.0 35 .............................. TAAAGTTTTTGGCGCCCCTGTAATACTGCCGAAAA 61256 30 100.0 37 .............................. ACATACGATGAAGGGAGTGATAGGATGGTATCAGCAG 61323 30 100.0 37 .............................. ATTTATAGCTTGTGATAGTATAAAACACCCTTGCCCC 61390 30 100.0 36 .............................. CTAAAAACCCGGTCGGGGTCGGGTGATAGGTGTTTA 61456 30 100.0 36 .............................. AAATGTATCGCTACCCCAAGTATTTGAAGGAGTTAA 61522 30 100.0 35 .............................. ACGGAGACTTTCCGGAAGTTAGGCTTTACTGTCGA 61587 30 100.0 38 .............................. CTTCACTCTTAGTCAGCTCCTTACTGCTTTCCTTGCCG 61655 30 100.0 35 .............................. AAGGCCTCGGCCGTCCAAAAAGACAATTCCGTCAA 61720 30 100.0 35 .............................. TGCTTCAATTCTTCCGCTATTTTTATTAATGTTTC 61785 30 100.0 38 .............................. ACTCAAGAGAAGACACAGTAAATCCACTCCAATGATAA 61853 30 100.0 36 .............................. TGTCTCTTTCCACAATCAGCTGTAGCACACGCCATG 61919 30 100.0 36 .............................. ACGCCGAGGGAGGTGTCGCCCTCGGCGTGTGGAAAG 61985 30 100.0 37 .............................. AATTATTTATTTCCATAATGTATAGAATGTGATTTTG 62052 30 100.0 37 .............................. AGCGACATAACACAAGAAGTCTATTTGAGACTTCTTG 62119 30 100.0 36 .............................. AACATAAATTTCTTTGCAAAATACACGATTATTAAA 62185 30 100.0 38 .............................. ATCCCAAAATGGTTCGATTAAACTGGTGGAGAGGGAAG 62253 30 100.0 36 .............................. CTGTTAGCCTTATATGGATATCGTTGTAAAATTCGA 62319 30 100.0 37 .............................. AAGCGGCGAGCGGCGATTATATTATTGGGCATTACTT 62386 30 100.0 37 .............................. CATACCGTCCGTTAGCAGGTCGGGACACTAAACTCTT 62453 30 100.0 38 .............................. CCATGGTAAAAACTGGCTTCAACGAAAAACAAGGTACA 62521 30 100.0 36 .............................. AAATCATAATCAACTGTTAAAATAATACTATCAAAA 62587 30 100.0 36 .............................. TCCCCAAGGCATGGGCACCCATCTTGTTGAGGGGTC 62653 30 93.3 37 ...............T.G............ TCCCAAGTATCGTCGTAAGCCCGAGGGGTAACTACAA 62720 30 76.7 0 ...............T.A....T..TT.CT | A [62741] ========== ====== ====== ====== ============================== ======================================= ================== 48 30 99.4 36 GTTTTAATCGAACCAATCTGGGATTGAAAC # Left flank : GGAGCTTATTATGCCATGAATCTTGATGGGGGAGCTTCCAGTGGCCTTTATGTAAACGGCAAGTACCTAACCAAACCCTGGAGGCTTTTGTCAAATGCACTGGTGATTTCGTTGAATTAAGATTAATCAATTAAAATTATTTTTTTGGGAAAAGAGGTAAGAGTAAGAAGTTTTAATCATGCCATTTATGTGAAATGCTGAACATCTCTTTAAGAGGTCGACGAAAAGATTGCATAAACCATGAATGAGGAACATAATTTAACCGGAGTTTACCGATAAAAAATGAATATATTTGCAATCGAAGTAAATATTATACCATGTTTTTCGTCGACCTGCGGTTACCCCAAAAATCCCGGGAGGTCGACGAAAGAATGAAAATAGCCTTTAAACTTTGAAAAATAAGTGTTCAGTGGAAATTTACCACTATGCACCAAAAGTTACATAAAAAATGTAAACTTCTTCTTTCTTTAAAAATCTTTTTCTTTTATAATTAATTATGG # Right flank : TGGCTACCAGCGACTTATAAATAAAATAAATTTAAAAAGACCCGGAAGGATATTCCTTTTGGGTCTTTTTTAATTGGAAAAAATTTTTTGGACAGCTGTGGGTGTTTTTAAATAAAAAAGCTATAGATTAAAGGAAAACTTTTATTAAGTAATATTTACCAAAAATAAAGGGAAATAGGGAAAAATGTAGAATTTTATAAAAAAACAGAAAGGCGGGAACTACTTGCGGGCGGAAATTAAACTTATCGTTAAAGCAAAAGCCATCATACCGTATAATTACCAGCATGCCTTAACTGCTTTGATTTACCGTGGGTTAGGGGCTGAATCTCAAAGACTTGCGACCTTCCTTCATGATACAGGTTTTCGCCAGAATACAAAAACCTTTAAATTTTTTACTTTTTCTCCCTTAAGCTTTACTAACTTTAAAACAATCCGGGAAGGTATTGTGGTTTTTCCAGGCTTTGCAAGTTTTAAGGTATCATCTCCGCTACCTGAGTTTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGAACCAATCTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //