Array 1 2357937-2357385 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR796240.1 Treponema socranskii subsp. buccale strain Marseille-CSURQ0203 chromosome contig00001 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2357936 31 74.2 33 A.A.A..G.CCG.A................. ACAATATCCGAGTTATGCTTAAAGACGGCAGGC A [2357921] 2357871 31 96.8 33 ....T.......................... GATAAAAAAAGAGGGAACGGTTGAAGATTTGGT 2357807 31 100.0 34 ............................... AGAGATTAAAATCATTGAAAAGTACGGCGATGAC 2357742 31 100.0 34 ............................... ACAGGGAGCGAAGCCCGGTGAAAAATATTTATTT 2357677 31 100.0 34 ............................... TCAGCTACGTGATATTTGTAATTTCCCCCGCGAC 2357612 31 96.8 34 ..........C.................... ATCGGATATCGGAATAAAATCTTCGCGATTTGTT 2357547 31 96.8 36 ..........C.................... GATTACCCGACAGGGGTAAATAAAAACGCCGTTGGA 2357480 31 93.5 34 .C........C.................... ATTAAAATCGCCGAAGCGGGAATGCTCGATTTCG 2357415 31 61.3 0 TCATT.....CT.TT..T...A....A.... | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 91.0 34 GTCGCTCCCTTACGGGAGCGTGAATTGAAAC # Left flank : GAAGTTTTAATAATCGCAAGCGATATTGCGGACATCGTTATCCCTGCGCTCGGAAAATACAAAGACTTTGAATTGAAATCGGTGAACAGGGCGGGAAGCGACGACGAACTCGGCGTCGATAAAGCCGAAGCCGAAAAAAAAGAAAAAGAATTTAAACCGATCGTCGAAAAAATTAAAGAAGCGCTCGGCGACAAAGTCAAAGAGGTAAAGCTCAGCAAGCGCCTTTCGGACAGTCCGTCGTGTATAGTCGTCGACGAAAACGATCCGTCCTTCCAAATGGAACGCATGATGAAAGCGATGGGGCAATCCGGCGTCGACGTAAAGCCTATCCTCGAAGTGAACGGCGATCACCCGATTGTGCAAAAGCTCAAAGACACCGACGACAAAGAACGCATCGCCGATATTTCTTTCGTACTGCTCGATCAAGCGCTGCTCGTGGGCGGTGAAGAGCTGAAAGATCCCGCCGATTTCGTAAAGCGCATGAATAATCTTTTGAGCAA # Right flank : TATCTGAAGACGAGACGACATGACGCGGCACTGTCGCCGGGCGTTTTCAAACTTTTTGACAAAGGCCGCCGATTACGTGTATAATAACTTGAAATTTAATTGATAAAAAGCGATTACAACGATTCGGTAATTACGGGGGCTGTATGAAAAAGATGTTCGCTGCACTGATTGCGGCTGTCATGTGCGTTTCTGTGTTTGCATTCGATGTCACGGAGTATGTTCCGCTCAAAGGTGCGGTGAAAAAGTATACGCGTATCGATTACGGCATTACGGCGAAATTCGGCGAGTATTTCCGTACACCCGAAATGAAAATCATTCACGTATTCGACAGAGCGGGACGCGAAATTGAATCGTCTGAGATGACGGGCCGCGGAACGCTCGTCAATAAAATCAAAAATACCTACGACGCGTCGGGAAAACTTACCGCACAGGACGGCTACAATGCGGACAATGCGCTCATTTGGAAAAGTGCCGTCACGTATGGTGCGGCGGGAAATAAA # Questionable array : NO Score: 8.40 # Score Detail : 1:0, 2:3, 3:3, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTACGGGAGCGTGAATTGAAAC # Alternate repeat : TCCCTCACGGGAGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [7-7] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2613246-2612760 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR796240.1 Treponema socranskii subsp. buccale strain Marseille-CSURQ0203 chromosome contig00001 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2613245 31 93.5 33 ........T....A................. ATAGCTATACTATAGCTATAACCGATCGTGTAA 2613181 31 100.0 34 ............................... TTATATGCTAAAATAGCAGTATGGACATAGCTAT 2613116 31 100.0 35 ............................... TGGTCAACATTGCTGTAACCGGCAAGTTGGCAGAC 2613050 31 96.8 32 ..........C.................... AGGTCGTCGAAACGGTCGATGCGGTGCGCACC 2612987 31 93.5 34 ..........C.G.................. TGATGGCATTGAATCTTGCTCATAAAAGTGCGCT 2612922 31 100.0 36 ............................... GGCTTTTATCTCGGTTAATTAGTGGAGGTATGCTAT 2612855 31 93.5 34 ........T....A................. CCCTCAACTTTGTACTGGTACTGATATTCGAGCA 2612790 31 87.1 0 ..........C..A.....T.A......... | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 95.5 34 GTCGCTCCCTTACGGGAGCGTGAATTGAAAC # Left flank : GGCATCATTCGACAGCTGGCAAGAGTTCATGGACTATTATACGTCCGGCATTGTTTTTGAAAACGAAATGAATCAAGTGCCGAGCGATGCGGACGCCCGATGGTACGAGACGACATGGGAACTTGCAAAGGGTATATCGCCGACGACACAAGAGCAGGAGGATGCCGACAATACGCGAAAGAGCGAGCGTGATGACGCGGATGAAAGCCGGCCGGAAGTGCTGGATGCACTTTTTATAGCGACGATCGAGCGAAAGGGAGAACTCGAAAAATTTTTGCGGCGCATTGATGAAATTCGACGAGGCGATTTTATTGAATCAACGGATTGATACGATTGCACGACATGCCGCATCCGCGCTGAAAGTCGGCGCAAAGTATGATCAGGAATGGTATCGAAATGCAAAAGTAAATTACGATACATTGTACCGAGAGTACACAGACTTGCAGAAAATCACCGAAGTTACGGCCGAAGTACAGCAGGCATTGAAACGGCGGGATATG # Right flank : TTGATATTGCCGACAACAGGCAAAGAAGTTAAAATCGCATCGCCTTTCGTTGACAAAGCCTCCTTTCGGTGATAGTGTTTTTATCCGGTGAGATACGGTAAACGGCGGGCCGAAAGGCTGTCGTCGTTTTTATCAAAGCTTGCGATTTTCCGCAAAAATTACAGAGGCTTAGTATGAAAAAAGATTTAGGCGTTCATCCCTATGTGTTTCCCATGCCGGTGCTTATGGTTGCGACGTACAACGAAGACGGCAGCGTCGACGTCATGAATATGGCGTGGGGCGGTATGTGCGCGGAAAATATGGTCGCGCTCAATCTCGATGAATCGCACAAAACGTCCGAAAATATCAAAAAGAGAAACGCTTTTACGCTCAGCATTGCGGATCTCGACAATATCGAAGCGGCTGATTTTTTCGGCATCGCGTCGTGCAATACGATGCCCGACAAATTCGAACGTACGGGATTGCATACGTATAAAAGCCGAAAAGTGGACGCTCCCGTC # Questionable array : NO Score: 8.73 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTACGGGAGCGTGAATTGAAAC # Alternate repeat : GTCGCTCCTTTACAGGAGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2624152-2616298 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR796240.1 Treponema socranskii subsp. buccale strain Marseille-CSURQ0203 chromosome contig00001 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2624151 31 100.0 35 ............................... GTTCGCCGAGTTAAAACAGGAAATCAAAAACGAAT 2624085 31 100.0 33 ............................... GTGTTTGAGCCTTGCCCTTCCATTTTTCCACCC 2624021 31 100.0 33 ............................... TACTATTAAAGAGGTTAAAAATGCTGATAGCAC 2623957 31 100.0 35 ............................... GCTGATCGTACGGCAGCATTTGTGCAAGCCTGCGA 2623891 31 100.0 34 ............................... GACAATGCCTGTTATGGTTATGCTTTTTACAGTA 2623826 31 100.0 34 ............................... ATTTCACCTCCATAACCGGTATGCCGTCCGGATC 2623761 31 100.0 35 ............................... GAAGAAAGTATTGGATTTTCAGCTTGTTCGTCCGC 2623695 31 100.0 34 ............................... AAACGTGGTGTCGGTCTTACACTGATTTAGACAA 2623630 31 100.0 34 ............................... CCGCGATGATGTATCATCGTGTCGTGCGCGATTA 2623565 31 100.0 32 ............................... ACAAAAAAAAATAGCCCCAAAATAAGGGGCTA 2623502 31 100.0 33 ............................... ATTTTAAACTCCTTATAACATTATAATAACTAC 2623438 31 100.0 34 ............................... TATTATAGCCCCTTATTTTGGGGCTATTTTTTTT 2623373 31 100.0 35 ............................... TTTGTTGTATCCGATTCGTTCTGATTTTGAGCGCT 2623307 31 100.0 35 ............................... TTGCGGCGTCATCTTGAAATCACCAGAAAAAACGT 2623241 31 100.0 35 ............................... TCAGAATCGTACTATAGAGGTGCCTTGTGGTAACT 2623175 31 100.0 34 ............................... AATGTGTTATAATGTGTGCGTGCGCGATTATCGC 2623110 31 100.0 26 ............................... GCTTATCAGGACGCTTTCGATTCTAT Deletion [2623054] 2623053 31 100.0 33 ............................... TCCTATTGCTTTGTATATTAAATCTCAAGGTCG 2622989 31 100.0 35 ............................... AGCGGAAGTAAGCGCGGTAAAGTCGGAACGGACAC 2622923 31 100.0 34 ............................... TCGTCTTGGCTTTAAGGATTGGCGCGCGTATGCG 2622858 31 100.0 33 ............................... GCGCAAGCGGTTGTATGTGCATGCGTTTTATTC 2622794 31 100.0 36 ............................... ACCGTAGCAAGGCGTTGCGGCGTCTCGCCAACAAAA 2622727 31 100.0 33 ............................... TGGGGATAATGGTAACGGTAAAAGTACCGTGCT 2622663 31 100.0 34 ............................... GAGCTCTTGCAACTGAGTTTCCGGCTGACCTATT 2622598 31 100.0 33 ............................... AATATGATGGAAGCGTTTAAACGCGACGGCGGC 2622534 31 100.0 33 ............................... TGGTACGGTTAACAGCGGTATAAGCATTTATAG 2622470 31 100.0 34 ............................... GCAGAAACAGGCGAACGATTTTGATTAAGCCAAT 2622405 31 100.0 32 ............................... CAACTCTCGACGAGCGCTCGTGCTTTTGATTG 2622342 31 100.0 34 ............................... AAACGATCCGTATTTTGGATTGTCGCTTCGGATA 2622277 31 100.0 34 ............................... TCCCATAAGGCCGAGACCGAAACCCGCACCGCTT 2622212 31 100.0 33 ............................... GATATTTTTGCGCCGCATAAAAGCGGCACGTAT 2622148 31 100.0 33 ............................... TTGCACCCCTTACTAATTTTTACGCGCGCGGCC 2622084 31 100.0 33 ............................... GTAAATATCTGAAATTGATCGCACTAGCAAACA 2622020 31 100.0 35 ............................... GTTGGCAACTTTGTAAAAATCTTTCTTTATCTCAA 2621954 31 100.0 33 ............................... AGTTTTCGAAGCACACAGTAACGAAGGTTTTCC 2621890 31 100.0 35 ............................... GGGGCTTACGGGAACGAAGTTTAACGAAATTATGA 2621824 31 100.0 34 ............................... TGGGTTATACCATGCTGTTTGCACAATTTTTTTA 2621759 31 100.0 34 ............................... CAAACCCGTGATGTCGATCACCTCTTTAACCTGT 2621694 31 100.0 34 ............................... GTTGATTGAACAGGAAAGATGGAAAATAATGCTT 2621629 31 100.0 36 ............................... ATGACTTTAACGTATGCGCCCGAATATCTACCTTCA 2621562 31 100.0 33 ............................... GATCGGTTGCGGCTCGATGTGCAGCACGTCCGC 2621498 31 100.0 34 ............................... TCGAGGTGTTTCAATCGGCGGTGATTTTGTCGGT 2621433 31 100.0 33 ............................... ACGTCCAAAAGGTTTGAACTGCTGAAGCAAAGA 2621369 31 100.0 33 ............................... CCACTTTTCAGCGGGTGTAGCGCCAGGCTCTGG 2621305 31 100.0 34 ............................... TGCCTTATACTGAGAAATAACACACGAGTCTTGG 2621240 31 100.0 33 ............................... ATCTTGCCAAAACTGTAACGGTGTTTCGTTTTT 2621176 31 100.0 33 ............................... GCCAGCCCGATAAATCAACGCGGCCCGAATCGA 2621112 31 100.0 33 ............................... CGATACGATACGTGAAATAGGTGCCTCTTTTGC 2621048 31 100.0 34 ............................... TCTGCATCCCGTTTCGGATTTTGCGGATCATAAA 2620983 31 100.0 34 ............................... GGTTGGCTTGATATGTCTGATAAAGTCAATGATG 2620918 31 100.0 34 ............................... TAAAAGCAAAACCAATAAGGAACAACAATCATCG 2620853 31 100.0 34 ............................... AGGTGCTTTACCTCTTATCCTTGCAACATCTTTG 2620788 31 100.0 33 ............................... CGCACCCATACCGATAAGTAAAAGAATACAATA 2620724 31 100.0 34 ............................... AATCAATGGGATAAAGCACCATCCAAAGAATATT 2620659 31 100.0 33 ............................... GTTGTATCTCGCATTGTACATCCACAAGTCGTA 2620595 31 100.0 33 ............................... CTGTGTTGTGGAGCCGAATTGTATGCCATAGAA 2620531 31 100.0 34 ............................... ACGTGGACGAAGCGGCGGAGCTTGTCTGATGAAA 2620466 31 100.0 34 ............................... CGGTACACGATGGAAGCCCGAAACGTTTATCTAT 2620401 31 100.0 33 ............................... AACGCTTTATCGGTCGTGTTTTATGATCATGAG 2620337 31 100.0 34 ............................... TAAGACGTGCTATCCTATCAAGTATTTTAGCTTT 2620272 31 100.0 34 ............................... CATGGTAAACATAAACGATACAAGTATTATGCCG 2620207 31 100.0 33 ............................... GACCCGTACACCATCCACGCAATCCGCCGTCCG 2620143 31 100.0 34 ............................... CGCAATACAGACGCGCATATAATCTTTCCATTCC 2620078 31 100.0 36 ............................... TGTTATTCATATCGTCCTCCTGTTATCATCCGGCTT 2620011 31 100.0 33 ............................... CATAAAGAGATAGCTTTCGTCACTTTTACTGAT 2619947 31 100.0 32 ............................... CAGTCGACGCTCTTGCCGCTCGGATCTTTTGC 2619884 31 100.0 34 ............................... ATCAAATCAAACGAACGATTCTTAGCGTATAATT 2619819 31 100.0 34 ............................... AGCATTTTTATATGTGGATAAACAATTTTGCTGC 2619754 31 100.0 33 ............................... CGGCTACCGAGCCAAAAATAGACTGTAATACTT 2619690 31 100.0 34 ............................... CGTTGATTGCGTATAACTATATCTACAATGAATG 2619625 31 100.0 34 ............................... TTGCGCTCGCCCTCATCGCAGGGGGCGCGGTTTG 2619560 31 100.0 33 ............................... GGGTGAACGATGCTGACCGCAAGGTCTCCACCG 2619496 31 100.0 32 ............................... TTTTATCAAATCGTTAAACGGATTATCTTCGC 2619433 31 100.0 35 ............................... AACGTCCGGCTTATAAGCGAGCACGCCCTGTTTAT 2619367 31 100.0 33 ............................... ACCCTTATAGATATTGTTTATCCAGATCGACGC 2619303 31 100.0 32 ............................... GCCTGTGCTTCGCCCGCATGCCACAATCGATA 2619240 31 100.0 33 ............................... ATGATCGTTTTTCGTTTGCACTCGGCGCCGATA 2619176 31 100.0 32 ............................... TGGACAAAAACGATAACGCTGAAAAAATCCGC 2619113 31 100.0 33 ............................... CCACGATTGCCCGCGACCGCATGAAACCGTCTG 2619049 31 100.0 35 ............................... CCGCTTACGTGTTATTTTTCTGGCGCGCAGTGCAT 2618983 31 100.0 32 ............................... AACCAAATCCGCAAAATCTCCGACCGTCATAA 2618920 31 100.0 34 ............................... TATTTGTTCGGCTGTAGCCCCCCACTTCAAAAGC 2618855 31 100.0 34 ............................... GAAAAGCGTCTTGCAAAGAAAACGCTTGACGCGC 2618790 31 100.0 36 ............................... CGTCGGGAAAAAGAAAAGACGATGAAGTGTATCGGC 2618723 31 100.0 34 ............................... CTCTTTGTTAACTGCGCTATCCGGTTTTTGTCGG 2618658 31 100.0 34 ............................... AGGACCGGCAGCTCATTGTCAAAATAAGTGCGGA 2618593 31 100.0 33 ............................... GCGCCTGCCTCGTCTTTTGCGTTTACATACACT 2618529 31 100.0 34 ............................... AAGTTGTGTTGTATCAAAAATCGCATAGTCACCG 2618464 31 100.0 34 ............................... CCTTTTTTGATATAACTTGCGGTTTCACTTGAGT 2618399 31 100.0 34 ............................... ATGAAAGATCAGTATCTCTACGGCATCCGCTACC 2618334 31 100.0 34 ............................... GCATAAAGTGCTTTACCTTCGGCTGAGAAAGCGT 2618269 31 100.0 33 ............................... GGCACTGGTCGGCATTATAAAAAATATTGACAA 2618205 31 100.0 34 ............................... TGACACGTGTAGATGCGTGGCGTCCGATGCCGTT 2618140 31 100.0 33 ............................... CAAATCCTCAACAGGTACCATCACATACTGCAT 2618076 31 100.0 33 ............................... TCGCGGTCTTGGTCTTGGTTTTGCAATCGAGAA 2618012 31 100.0 33 ............................... GCTAAAAAAAGTATTTAACGGCGAAATTATCAA 2617948 31 100.0 32 ............................... AAAAACGCAAGAGACTACCTTGAACAGCAAGG 2617885 31 100.0 33 ............................... GTACCGCCGAAATATAGTCGGGAGTTAAAAAAT 2617821 31 100.0 34 ............................... CTACCGGCCGACAGACGTTATGCTGCGTTTTCGG 2617756 31 100.0 33 ............................... CCGGTCTTATTGATCACTGAGGTATAAAATGAC 2617692 31 100.0 33 ............................... TTGATAATACGCCTTTCCAGACTTACCGTACAA 2617628 31 100.0 33 ............................... CGCACAACTCGATGCAGGCGATAAGGCAGGGCT 2617564 31 100.0 35 ............................... TCCGGTGATTTTTATGGGAATAAATCGCCCAGAGG 2617498 31 100.0 33 ............................... TGTCGATTTCGATGCCTGCGGCGGCTTGATAAG 2617434 31 100.0 33 ............................... CCATCGTGAGACCGTTGTTTTCAATCAATGCTT 2617370 31 100.0 33 ............................... AGAAGAATTACAAAACGCCGGCGGAACAGCTGC 2617306 31 100.0 34 ............................... TCCTGAACATCATCGGCACCGCAATGCAAGCCGG 2617241 31 100.0 34 ............................... GCTATTCGGTTGAATTGCAAGCCGCACAGGTTTT 2617176 31 100.0 33 ............................... GCAAAAACCGTCATCGCGGATAACGTCGGCAAG 2617112 31 100.0 34 ............................... GCGCACAACAGAAATAACAACAGCAAAAGGGCCT 2617047 31 100.0 33 ............................... TCATACGACATCGCTGCTATTCTCGAAGACAAA 2616983 31 100.0 36 ............................... CGCAAGATCAACTCCTTTTCGACGAGAAACCGGCAA 2616916 31 100.0 34 ............................... ATATTTAACGGATATGAGACCCTCGCTTCAACGA 2616851 31 100.0 36 ............................... ATTACGATCGGCAGGATTATACCAAGCGCCACAATG 2616784 31 100.0 34 ............................... AAAAACATGGCGCGGCTGTACGGGCTTAATCCGT 2616719 31 100.0 36 ............................... TTTTAGGGTTAAGTCTAATAATTCCGCCGGTACGCC 2616652 31 100.0 33 ............................... CGTTTTGCGAAAAGCAATAGTCATCGGCGTATA 2616588 31 100.0 35 ............................... TCGTGCCGTGCGGTAACTGTTGTAATTGTCGCGCT 2616522 31 96.8 34 ..........T.................... AAGCAGAACGGCGGAAGTTGGATTTGAAACGCGC 2616457 31 96.8 34 ..........T.................... GAACATACGAAAATAGTCATCGTGAAAATCTTCC 2616392 31 96.8 33 ..........T.................... GTATACGGCATACCGCCAAATTCGTCGGGAAAG 2616328 31 96.8 0 ..........T.................... | ========== ====== ====== ====== =============================== ==================================== ================== 122 31 99.9 34 GTCGCTCCCTCACGGGAGCGTGAATTGAAAC # Left flank : CCCGGTATACCTTTGGAAATAAAAGAGGGGGCGCGCGATGATGATGCTGGTAAGTTATGATGTGGCAAAAGATGAAAAAGGGGAAAAGAGGCTTCGGCATGTGGCAAAGATTCTTGAAAATTACGGACAGCGCGTTCAATATTCCGTCTTTGAATGCTTGGTCGACCCTGCGCAATGGGTTGCGCTGAAAAGTAAATTGCTCAATGAAATAAATCCGAATTACGACAGCATCCGCTTTTACGCGCTCGGTGCAAATTGGGAGCGTAAGGTCGAACACGTAGGACAAAAAAAGCCGATCAATCCGCAAGGTATTTTGATTTTATAATCGGGTTTCCGGCTTTCCGTCCGCGAACGGGAAGCACACATCGGTTATTCATTTCGCTTGAATTTTATAACCCGTTATATTATAGTGAATTAGATATTGACATTATAGTGTTCGAACTAAGTTCGCGGAAATTATAATGTAAATATCGGTATTACAAAAAAATAACTGCTATACC # Right flank : GGGACGCAGATGTTCGGCGATGCGAACGTCGCAATCGAAGCGGCGCAGAAAAGCGACGTCGGAGCTGTAAACGGGGGTGTGTCATTCAATGAGACAGAGAAAGGTGTACGTGCGGTTATTTACGCCGCCGAGACGGCTAATTTTTCAACGTTTGCTCATGAAGTGGCGCATATTTGGAGACAGCAGCTCACAGGGGAGTTAAAAACGCAAGCCGAGAATGTGTTCGGCGTAGAAAAAGGCCAATGGACACGTGAACAGGAAGAACAGTTTGCCGTCGGCTTTGAGGATTATTTACGGACAGGCCGTGCACAAAACAACGAGCTTAAAAATCTGTACCAAAAACTTGCCGAATATATTTCGCGCGTATATCATGCCCTGAAATCGCGTATCGATTTTACCAAAGACATTGACGACGTGTACGCCCAGCTTATGCAAGGCGATGACAGCATCCTTGCCGCCGCCGAACGCGCCGTTGCTGAAACCGAGCGGCAAGAGGCGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //