Array 1 281505-280570 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVA01000001.1 Ligilactobacillus salivarius strain FNMGHLBE13_L1 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 281504 36 88.9 40 AGA..........T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG A [281498] 281427 36 97.2 39 .............T...................... TGTTCTACCCAGCTTTCATTATATCTCAAAAACGATGAA 281352 36 97.2 39 .............T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA 281277 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTTAAAGTATCTAGATTTT 281202 36 100.0 33 .................................... ATCGAAAACGAGGCTAATAAGTAATGTTTGGAA 281133 36 100.0 36 .................................... TAGAACTCAGCGAAAAAGGGTCAACCATGAAAACTA 281061 36 100.0 40 .................................... GTTCAAAGCGAATTTGATAGGCTATCAGATATCAAACGTT 280985 36 100.0 38 .................................... AACAGTGAATTTTTCACTCTCTCTCGAATTATTTTCTA 280911 36 100.0 41 .................................... TTTAAAGAAAATTTGGGCTATGGCTAAAGCTGGACGTAATA 280834 36 100.0 41 .................................... TTTAAAGAAAATTTGGGCTATGGCTAAAGCTGGACGTAAAA 280757 36 100.0 41 .................................... TTTAAAGAAAATTTGGGCTATGGCTAAAGCTGGACGTAAAA 280680 36 100.0 39 .................................... AGAAACCTAAGGAGGACAAATAATGCAAAGTGAAAATTT 280605 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 98.7 39 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : ATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 49977-47643 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVA01000006.1 Ligilactobacillus salivarius strain FNMGHLBE13_L1 Scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 49976 36 100.0 30 .................................... TAAGTCTTGGGCTTAAAGTTATTCATGACC 49910 36 100.0 30 .................................... CAATTCATAAGCTGCATGTTCAGCTGGACT 49844 36 100.0 30 .................................... GTGGGCTCCAAAGTCAGTAATTAAAGGTTT 49778 36 100.0 30 .................................... AATTTGAATACGTAATTGAATACGTTTTGA 49712 36 100.0 30 .................................... GTGGGCTCCAAAGTCAGTAATTAAAGGTTT 49646 36 94.4 30 ..G.................G............... AAATTGAATACGTACTTGAATACGTTTTGA 49580 36 94.4 30 ....AC.............................. GAGAAATGAAAAATGGAAGTTACAGTTCCA 49514 36 100.0 30 .................................... TAATTAGTCCATTTACATTGCTTTGCCTAC 49448 36 97.2 30 ...................G................ AAATTGAATACGTACTTGAATACGTTTTGA 49382 36 94.4 30 ....AC.............................. TAATTAGTCCATTTACATTACTTTGCCTAC 49316 36 100.0 30 .................................... AAAATGGCTTAGTTGAGCCTTTGGTGTGGA 49250 36 100.0 30 .................................... ATAGCCCCATCTAATGAGTCCTTAACAACA 49184 36 100.0 30 .................................... AAGGGATTGGTAATTCCAACTCTTACAAAA 49118 36 100.0 30 .................................... GAGATTGGGCCGGAGTTATTAGGCGTGCAC 49052 36 100.0 30 .................................... TGACAAGCCTGTTAAAACTCCAATGAAAGA 48986 36 100.0 30 .................................... TAGCATTTAAAATGAACTTTCAAACCGTCT 48920 36 100.0 30 .................................... TATTATAATCGTAAAGGCTTTGAACAAGAG 48854 36 100.0 30 .................................... AACAACTTGAGTAAAGCGTCTCCCAGGACG 48788 36 97.2 30 ...................G................ TATTATAATCGGAAAGGCTTTGAACAAGAG 48722 36 94.4 30 .GG................................. AACAACTTGAGTAAATCGTCTCCCAGGACG 48656 36 100.0 30 .................................... TCAACGTCAATGGAAGCCAGGACGTCAACG 48590 36 100.0 30 .................................... CAACCGAAACCAGTTTTTGCCATGCGTTAC 48524 36 100.0 30 .................................... CAACCGAAACCAGTTTTTGCCACGCGTTAC 48458 36 94.4 30 ........C...............G........... ATGTGTATCTGCACAAAGCGATACACTACA 48392 36 97.2 30 ..G................................. ATGTGTATCTGAACAAAGCGATACACTACA 48326 36 100.0 30 .................................... TTACTGGAATTGAAGGCGGATTTGGTGAAA 48260 36 100.0 30 .................................... CAGGTGGAATATTCAAGTATTTACATATCT 48194 36 100.0 30 .................................... AATGCATCTGCAATCATATTAAGAATACCT 48128 36 100.0 30 .................................... TGAAACACCTAAACCAGCTCCAGCGCCTAG 48062 36 100.0 30 .................................... GATTAACTTCTGGTAAATTATAAGGATTAT 47996 36 100.0 30 .................................... ATTATTCTTACGTGAACATCCAGATAACGA 47930 36 100.0 30 .................................... CATTTTTTGCGAAAAAAGTAACAATTATTG 47864 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 47744 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 47678 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 35 36 98.0 32 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //