Array 1 103814-103243 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOLY01000007.1 Kushneria avicenniae strain DSM 23439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 103813 31 100.0 37 ............................... TCGATGATGAGAGCGTATTGGGCGGCGGGACGTGGGT 103745 31 100.0 36 ............................... GTTGGCACGTAGCAGCTTCGCCACCTGGCGGAATGT 103678 31 100.0 38 ............................... GGGTCTGTCAGGTCAACGCTGATCGTGGCCTTGGCCGT 103609 31 100.0 37 ............................... TCGTCACGCACCACACACCTCTAGCAATATCGCCCGT 103541 31 100.0 37 ............................... AATAGCGCGCTTGGCGAAACCATCCTTAAGCTAGGGT 103473 31 100.0 36 ............................... TTGTAGATGAGATACGCAGCCCCGGCGAGGGCGGGT 103406 31 96.8 36 ......A........................ GAGCGCCTGATCGGTCATGAGGGCGGATACGTTAGT 103339 31 96.8 36 .........T..................... ACCCTTGCGCGACGGATCGCCGACAATCGCATTTGT 103272 30 87.1 0 .....T..T.....C-............... | ========== ====== ====== ====== =============================== ====================================== ================== 9 31 97.9 37 CGCGGCCCGCACGGGTCGCGCGGATTGAAAC # Left flank : TAGATCGGAGGTTGGCATGCTTGTACTGGTCAGCTACGACGTTAGTGTCACCTCGGAAGGCGGCACCCGACGATTGCGCCGCGTATCGAAGGCGTGTCGGGATTTTGGTCAGCGTGTGCAATACTCTGTTTTTGAAATTGAGGTTGATCCGGATCAGTGGGTCAAATTGCGTCAGACCCTGATCGACACGATTGATGATGAAGTTGATAGTCTTCGATTCTACTTTCTGGGTCGCAACTGGCAGCAGCGCATCGAACATGTTGGTGCCAAACCGGCCCTGGACATGAACGGCCCGCTGGTGTTCTGACCTATCTGTACTGTCCTGCGAACGATAAGTGTCCCGCCTTTTCCTGTCAGGTTCGCATTTCTTTAACATCCTGATACTCAACTATTTGTGTGGCATTATCTATCAACACAATGTCCTGGAGAGGGCTTCTGATACGGGTTCGCCAAAACGCTGAGCTTTTCTCAAGGCTGACAATAGGTTATGAGTAAGCGGT # Right flank : ACATATGACGGGCGCAACGACCGGGCGTTCTATGTCGCGGCCGACCCGTATGGGTATAAATATCAAGGGTGATACTGTCGAACTTGCCCTGCTCTGGCGGGGCTTTTTTGTGTCCGTTATTCAGCGATGTATGCCACCTGCTCAAGGCGTCAGACTCCGGGTCGACAAGATGATCAGTCCTGCCTGTTTCGCCCGGCCATGATCACGAACAATGGAAACTACCATACAGGATGCCGCCGCCGGGCTGGGTCAGGCGCTGGAAGGCGAAAACTGGCTCGGTCGTGTCGCGATACCGGCCGATAGGGCAGAGGTGCTTGCCGCCATAACGATGGTCGTGCGGCGGCGCACCCTGTCGATGTCCGTGCTGATCGGCACGGGGTTTTTATATCGCTTTTGCTTTCGCAGACGCCTTTGCCGTTCTCGGCCTGCGGTTTTTATCTGGTGGCCGTGGGACTGCTGGTGCTTTTGATGATGCGCTCAAACGCGTGGTGATTCACGAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGGCCCGCACGGGTCGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 113210-112581 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOLY01000007.1 Kushneria avicenniae strain DSM 23439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 113209 33 100.0 34 ................................. TTAGCCTCGCGAACAACGACCATGAATTTTTTGA 113142 33 100.0 32 ................................. ACGTGAGGTGACCATGGCCATCAAAGGCGGCA 113077 33 100.0 34 ................................. AAAGCCTTCCGGCCTCGATATCTGCTTTCCAGCT 113010 33 100.0 34 ................................. CGGTACTCGGCATTGACCTGCTCGGTATGGCTGC 112943 33 97.0 33 G................................ AGCCGCTCCACGCGAACGCTGACCACTTCCAGC 112877 33 100.0 35 ................................. TGCGCTCCGGCTCAGATGCTGGATCAGCCGATCCG 112809 33 97.0 33 G................................ CAAGTAGTTGGTCATATAAACACCTTCCACTTG 112743 33 100.0 32 ................................. TCTTGTAGGCCGCCGATCAAGCCTTCAATGAT 112678 33 100.0 32 ................................. GGGCTATATCTGGATCAAAGGGCCCGGTCAAA 112613 33 97.0 0 .....................C........... | ========== ====== ====== ====== ================================= =================================== ================== 10 33 99.1 33 AGTCGCGGCCCGCACGGCCGCGCGGATTGAAAC # Left flank : TCTGGACGGCAAGGCCGAGCTTTCTGACGGTGTCGAGCCCTATTTGGGTCTTGGCTGGCGCAACAGCTCGAAGCAGGGCTTGGGTTTCTACGCTGAAGCCGGCGCATTCCTGATTGACCCCTCTGTATCGGTAAATGCCAGAGGGCCTATCACAAATTCACCTTTGGCCCCTGCAGCTCGCGCCTATGCTTCTGATGCTGAAGATGATGCGCGAGATGAGTTGAACAAATACAACGTCTATCCGGTCGCCGTCATTGGTATCGAATACACGTTTTAATCCCGGTTTCTCGTGAGGTCTGCCCCGCTCCGGCGGGGCTTTTTTGTGTCCGCGAACCTGTAATGTCCTCGCATTCTCAGGCAGGCTCGCGCTTTGGCAAGCTTTTGATTCTGTATATATTTTTTGTTGTCAGCGAATGTAGAACCTTCGCACGACAAAATTTATTCAAGGCCCGCTTGTACAAAAGATTTTTCAAATTTATATCAATGATTTATGAATAGGC # Right flank : AGGACTTCAGACGCGGGTTTGCAATGGTAGCACCGGGGCAGCAGGGCGCGAGCGTACTTTCCATAGATCGTATGCGGATTGCATGGCCAGCCAGTGCCGGGCAGTACCGATACCTGCGCGCTCAAGGCGGTCGGCGAGGTCGGCCGATATGCCCGTATGACAGTGCATTACGCGCGAGAGATTGGTACGGGTTGTGCCCAGCCGGCGCGCGGCTTCTGTCACGCTCAGGCTCAGCCCCTCAATAACATCTTCGCTCAAGAGCTCGCCCGGATGGGGCGGATTGTGCATCGACACGAAAGCCTCTCAGGGGCCACATACGGCCCGTTTGGTTAGTGGTAGTCCTGATAATCGACCAGCTCGACATCATGGCCTGTAAAGCGCCACGTTATGCGCCAGTTACCGTTAACCCACACCGACCAGTGACCGGCCATTTCACCCTTGAGTGGATGCAGTTTGAAGCTGGGGCGGCTCATGTCGTCGGGACTTTCAGCCACATCGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGCGGCCCGCACGGCCGCGCGGATTGAAAC # Alternate repeat : GGTCGCGGCCCGCACGGCCGCGCGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA //