Array 1 2960134-2962215 **** Predicted by CRISPRDetect 2.4 *** >NZ_SCEO01000001.1 Lacticaseibacillus paracasei strain SRCM103424 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2960134 36 100.0 30 .................................... AACTGTTGTTTTGGATATTAAGCAAAGTCT 2960200 36 100.0 30 .................................... TCACACGCTGACAGCAGTTGTGGATTACAT 2960266 36 100.0 30 .................................... GGCGATTACATGCTGGAAACGCGTGTCAAG 2960332 36 100.0 30 .................................... CGCTGCGCCACGCTGTCAAACGTGACCGCT 2960398 36 100.0 30 .................................... TTGATCGGCTGCCACTGCGCGGGGTCATTG 2960464 36 100.0 30 .................................... ACTATTGTTGGCAAGTTGGTTGATGCCTTG 2960530 36 100.0 30 .................................... GTTAGTATTTTGCGTTTGATCACTCAGCAG 2960596 36 100.0 30 .................................... TCAGCAAAGTGGGCAACGAGCAGAAGGTGC 2960662 36 100.0 30 .................................... CGAGGTTTGACAAATGTCCTTGGGTCTTTA 2960728 36 100.0 30 .................................... TGTACGGTACAACTGCCCGTGGGGTACGCC 2960794 36 100.0 30 .................................... TGACCGGACGAATGCTGCGCAAGATGGTGC 2960860 36 100.0 30 .................................... AGAATCGATGATCGAGTATGCTCTAATGTC 2960926 36 100.0 30 .................................... GACACCAGCGTGGCGTTAGCGGCCACCGAT 2960992 36 100.0 30 .................................... AGAAAGCAGGACGAAAAACGGAATCAAACG 2961058 36 100.0 30 .................................... GAAGCTGGTCGTTCGGGTGATGACGATGCG 2961124 36 100.0 30 .................................... TAGAAAACGCCTCTGCGCCCGTGTCAGCAT 2961190 36 100.0 30 .................................... AGCAGTAGACCCAACAAATGTGCTATCCGC 2961256 36 100.0 30 .................................... GGTTGCTTGCGCATCTTGGTGACACCGATT 2961322 36 100.0 30 .................................... TAATTCATTTATGAGATTTTAACGGAGGTA 2961388 36 100.0 30 .................................... GTTGCGCTGGCCTAAACTGCCGATCACACT 2961454 36 100.0 30 .................................... TGGATCTCTCAAGGCAATCCAAACGACACG 2961520 36 100.0 30 .................................... CCGCTTAATGTGCCAAATTGGCTGGCACCC 2961586 36 100.0 30 .................................... CGCAGCATAGTCATAAACCGCACCGCCAAC 2961652 36 100.0 30 .................................... GGCACAAGCTTCTACATCAGTCATGCCTGC 2961718 36 100.0 30 .................................... CAAAGGTACACAGCTTGATCATGCGGACAC 2961784 36 100.0 30 .................................... GACGAATACGGCAAGGTATGCCAGGCCATA 2961850 36 100.0 30 .................................... TTTCAATGGAAGTAGTATCAGTTTCTGTTT 2961916 36 100.0 30 .................................... TGTGACAACAAAATACACTTTGGAACGTGG 2961982 36 100.0 30 .................................... AAGCCGCACACAAAGGACGCCACCGAACAA 2962048 36 97.2 30 ...........................C........ TTAGCTTCATATCATTTACATGTTGGTATC 2962114 36 100.0 30 .................................... CAAGAACAACAACAACAGCTTGATGTGACA 2962180 36 86.1 0 .......................C.....A..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : CAAACAGCAGTGATATTAATATTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAAACAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGTAGTACGACCAGTCAGACGAGCAACGCGAAGGTCAAGATTAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //