Array 1 453121-454728 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTT01000001.1 Ligilactobacillus salivarius strain FZJTZ64M3 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 453121 36 88.9 40 AGA..........T...................... GGAGTGATGCAAATGGAAGCTACATACATAGCTTATGACG A [453124] 453198 36 97.2 39 .............T...................... GTAAGACAAGACCTTACTTGGTTATGAGTGCAGAAACAG 453273 36 97.2 39 .............T...................... TGTTCTACCCAGCTTTCATTATATCTCAAAAACGATGAA 453348 36 97.2 39 .............T...................... ACTTGGTACGTTGATTGAGAAAGCGTTGAGAGAATACTT 453423 36 97.2 39 .............T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA 453498 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTTAAAGTATCTAGATTTT 453573 36 100.0 33 .................................... ATCGAAAACGAGGCTAATAAGTAATGTTTGGAA 453642 36 100.0 36 .................................... TAGAACTCAGCGAAAAAGGGTCAACCATGAAAACTA 453714 36 100.0 41 .................................... ACAAAGTTTTACTCCAGACTCTGTTGCAAACTTACTCAACG 453791 36 100.0 39 .................................... CTAGTCGGCAATTACATAATTGCTTTAAAAATGGCTTTA 453866 36 100.0 42 .................................... ATGCAAGAAATCCTGGATGACATCAAAAATCTATGGGTTTAG 453944 36 100.0 41 .................................... TTTAAAGAAAATTTGGGCTATGGCTAAAGCTGGACGTAAAA 454021 36 97.2 39 .........C.......................... AGAAACCTAAGGAGGACAAATAATGCAAAGTGAAAATTT 454096 36 100.0 39 .................................... CTAGTCGGCAATTACATAATTGCTTTAAAAATGGCTTTA 454171 36 100.0 40 .................................... TGAAGTACCACATTAGACCGATAAAAGTAACAGAAGATAT 454247 36 100.0 36 .................................... AAATTATTAGGAAAATCGAAGATAAAAATAATTTAA 454319 36 100.0 40 .................................... GCATTTTTTGTTCATTCATTGAACATCTTTATTAAATCAT 454395 36 100.0 37 .................................... AATAAAAATCAAAAAGAGGTAGTTAATTATGGTTATG 454468 36 100.0 41 .................................... AATCCTTGCAAGATGGAAAAGTCCGTGGATGGTCAAGTACG 454545 36 100.0 39 .................................... ATGTAGCAAACTATGAAGATATGTATTTTAGAGATTGCA 454620 36 100.0 37 .................................... CACTAGCAACTAAGAAGATTTTTACTTCAGCATTTGG 454693 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 22 36 98.9 39 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : TATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATTTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 48574-47428 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSTT01000009.1 Ligilactobacillus salivarius strain FZJTZ64M3 scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 48573 36 100.0 30 .................................... AAATCATTAGTAAGTTTAGTGGTAGTTCTC 48507 36 100.0 30 .................................... ACTAAAATCAGACCATAGGGTGGGATCGCA 48441 36 100.0 30 .................................... TGGTCTTGTAATTCCTGTTTTGCTAGGGTG 48375 36 100.0 30 .................................... TGGCAGTTAAGGAAAAGAAACGGGTCCAAG 48309 36 100.0 30 .................................... TTGTATGATAAAAAATTAGTGGCTTCACGT 48243 36 100.0 30 .................................... AAAATGCTATCCCAAATATGCTTAGTTATC 48177 36 100.0 30 .................................... TTAGGCTTTCCGTTAAATACAGGAACTACA 48111 36 100.0 30 .................................... ATGTAACACCCTTAACACGTTCACAATTAT 48045 36 100.0 30 .................................... TACTTTATTTGTGTATCCTTAATTAACAGA 47979 36 100.0 30 .................................... CTTTCATGTTTTCTTGCCCCATAACATCAT 47913 36 100.0 30 .................................... ATTGATTTAGCAGTGAATTTCTGATCAGAA 47847 36 100.0 30 .................................... CTAGGGATTATGCTAGGGAGCAAATAACTT 47781 36 100.0 30 .................................... TTGATAAGCGAACCATTTATCGCCTTTCTT 47715 36 100.0 30 .................................... CATTTTTTGCGAAAAAAGTAACAATTATTG 47649 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 47529 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 47463 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 17 36 98.0 33 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGTTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //