Array 1 300411-300637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020380.1 Clostridioides difficile strain DSM 102978 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 300411 29 100.0 36 ............................. CCTTATACACGACATTATAATATAAGTACGTTTTTA 300476 29 100.0 37 ............................. TGTTTATCTTTTCATTGTTCATGTACATTTCATTGAA 300542 29 100.0 38 ............................. TTTACTGCATTTATACCATCTACACCTTTTATTTTATT 300609 29 89.7 0 .....................C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TACTTATTCTTAAATAAACTAATAATAAGATTAAATATAATAAATCCAGTTGTTGAACCTAAAGCACTAACAGGTACTGATGATATATTAGCGAAATTATTCAATGCTGATAGACATAACATTACTATAGAAACTATAACTAAATAAGATATCACTGTAAAAAATGGAATTGAAATACTTATATTTAACTCTGCTTCATATTCTTTCATAATATCATTCCTTTCAAATTATTTTACTTAACTTTATTATAGCATTTAAACATAATTAAATGTAAAAATACAGTTAAAAATTAATTGAAAATATCAATTATATGTTGTGATATAATAAAATTATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCCTAACACTTGAAATATAATGTATTGAGGACGTATGATAAGTATTATCAATTGTACTACTCATGGTTCACTGCAAATTTGAGAGAGATGCGTATGTGTAGGTATTGGAAATGCCAAGTTTATTTTGGG # Right flank : TTAAAAATACTGAAAAACACTTACTTGAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGTAAAAATTTTACTTATATAGTATAATAATCTTATAAAATTATTGTGCTAGGGGGATTTGTTATGTTTTGTTCGAATTGTGGTGCAGAAATCACAGGCGTAGGCAAGTTTTGTTCAAGTTGTGGGGTTGCTGTAGAAACTGAAATTATTGAAGATAATAATATTAAATCAAATGACCTAATCGTTGATGCAAATGGAATAGAAATAAATATGACTGAAATTTATAGAAAATATAGAAAAGAAAAAGTAAATGCAATAAAAAATGTAATGGAAATAAGTGGTTTGAATATAAAGGAAGCAAAAAAAATAGTGGATTCTTCCTTTGAAGAGTTAAAAATCAATTTTATTGATGATACTATGAGCAATTCAGAAAAGGAAAAAATAATAAATACTCAAAATAGAAAAAATAATATTGAAAAAGCTCAACAAGAATC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 1769637-1769994 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020380.1 Clostridioides difficile strain DSM 102978 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1769637 29 100.0 38 ............................. CTCTTACGCTTTTTCAATCACTTTTTTCCTTGCTAAAA 1769704 29 100.0 37 ............................. TGCGGTATATTGGAATTGAACAGGATGATTTAAACAA 1769770 29 100.0 36 ............................. GATGTAACCGCACAGATATTCTGGCTAAAGAATCGT 1769835 29 100.0 37 ............................. AGCAACTAGAGTTGATAAAATTAATTTAATAGGAATA 1769901 29 96.6 36 ............................G AGTTTATGATTTTTCATTGCATATTCAATAAAAAAT 1769966 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 98.9 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTATTTAAACTATGCTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCACTGTATATAGATTACATTTTTTCTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGATAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTATATGATAAGTGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATATGTGTAAGTATTGAAAATACTAAGTTTATTTGGGG # Right flank : GTTTTATAATTTTCTTTTAAGGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAGTCAAAAGGTAGTATAGAAATCTTATCACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTATATAATTACATATTTTTTCTGATTAAATAATGTGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCTAATCTTCTTATTTAATAAACTCATTTCTATATCTTCAAGTCCTATTAAATATTGATAAAATTTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAACTCTAATTTATCTAAAACTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTATAAATTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : GTTTTATATTAACTATATGGAATGTAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1945616-1946827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020380.1 Clostridioides difficile strain DSM 102978 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1945616 29 100.0 36 ............................. TTTAAAACCTCATGAGAGGTAAGGGGATGATAAGTG 1945681 29 100.0 37 ............................. TTAAGTGATAGAATTTCGTCTCAATTGAGCAAAGAAT 1945747 29 100.0 38 ............................. AAAAACAAAAAATCCAATTTTAAATTATTATTTTGATT 1945814 29 100.0 38 ............................. TCAACTAAAGAATCAATATTTTTCAAATTAACTCTAAC 1945881 29 100.0 37 ............................. TGTCATTTTTTCACACCTCTCTTATTTATATAATAAC 1945947 29 100.0 37 ............................. GGTGTATTTATGTTGGCAAGAAGCGTTGATGAAATGA 1946013 29 100.0 36 ............................. CTGAGTAACAAGGATTTTTATTAAAAGTATTATCAG 1946078 29 100.0 36 ............................. TATCTTTAGAATAACAGTATCCATCATAATTATTTG 1946143 29 100.0 37 ............................. TCGGTTAAATCACGAAGTATTTCGTTTACTGATTCAG 1946209 29 100.0 37 ............................. CTTCTCAACATTATATATTGAAAATAATCTTGTCACT 1946275 29 100.0 37 ............................. CCCATTTATTTACATTGTATCTAAAGAATATTTTAGT 1946341 29 100.0 37 ............................. GCTGGTAAGTTTGATTTTATATCATGGTAGTAAGCAG 1946407 29 100.0 36 ............................. TTAAATCCAAATTGTTTACCTGCAACAGAAATGTCT 1946472 29 100.0 37 ............................. GTATAAATTGAAATCAGAAGGTTTTATTATTGATTTA 1946538 29 100.0 35 ............................. CTATTAACTTTAGGTATTTTGTAAGATTTTTCCTC 1946602 29 100.0 37 ............................. CATGAACATTCTCTATAATATGTGTGTTCTTCAACTA 1946668 29 100.0 37 ............................. GCTGTATTTATAATTTTTTATATTTGAGTAAATTAGC 1946734 29 100.0 36 ............................. TTTATACCAACAATTTTCTTCTCCATACTTTTCCAT 1946799 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 19 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATATGATGCTTACTGACATAAAACTGAACGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTCTTTATCCATATCGTCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAGAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATAACAAGATATTAGATATAAAAAATAATTACCTTATAAATAGATTGAAATTTATAAATATTCATACTATAATTTAGATATAAGGAGATGTCCTTATAAACTTAAAGGGTTTGTACTATTTGTACTATAAGTATTGATAATCTTAAAGTATATATACTATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATATTAAACAACACAAATATCAAAATTTAATATTGATATAGGTATAAACATTATAAAAACAACTGAAAATAAAAATCAAGAAATATTTAATGCTACTACAATAGGAACTAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2895235-2895008 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020380.1 Clostridioides difficile strain DSM 102978 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2895234 29 100.0 38 ............................. TTTTTAAGCAAATTTACATCTTTTTAGGTAAATAACAT 2895167 29 100.0 37 ............................. TCTGTAAACTGCCTTTTCTCTATTTGTTTCAGTTACT 2895101 29 100.0 36 ............................. AGCTTTTTAGCTTCGTCTACTACTTTATAAGCAAAG 2895036 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGTATACTAGCGAGTCTATCTGCTAGTTTAATAGTCTATATAACTAGCAAGTTATTTGGAAAACGTAAAAAACCACTCAAAGCTGCAACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCGTAGATTTAAATAATTACAAATTGTTTAAATTATGAACTCCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATGTTTATGATATAATAAAAGTATATTATTTTTGCAGTGAGCGATATTTGTATTAAAATATGCTTTAACCGTTGAAATGTAAGGCATTGAGAATGTGTGATAAGTGTTATCAATTGCACTACTTGTGCTTCACTGCAAATTTAAGAGAGTTATGTAAGTGTAAGTATTGAAAATACTTAGTTTATTTTTGG # Right flank : AAGAAATTGTTATGATAATGACTCTATAGAAAATTTCTTTGGTTATCTTAAAAGTGAAGAGATCTACTTAAATTTGTATACTTCAAGAAATGATTTAGAAACTGCTGTTCATAGCTATATACGTTGGTATAACTATGATAGATTACAATCTAAATTAAATAGCAGCACACCTGTAGAATATAAGCGTGCTGCTTAAAAATGACTATCTTATTAAAAACTGTCTACTAATTAGGGTTCAGTTCACATATAAGTGCTACCTTTTATTTTGTAGATAAAGTGTTTTACTGACATAAGTATTAAATTTACATTTTAAAATTATTTAAATATCAATAAATAATTAAATAGAAATTATTATAATTAACAATAGATTCCTTTTTCAAAGAAGTCTTTAATTTCATCAAGGTTATCAGTTTTTCCAAGTGCTAAGATAAGTTTTATTCTAGCTTTTTGACCTGGCAAGTCTCCACCAAATATACAGCCAAGATTTTTTAAATCTCTAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3108563-3108072 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020380.1 Clostridioides difficile strain DSM 102978 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3108562 29 100.0 37 ............................. GTTTTTGTATTTATCTCCCCTTTTTTCTTATCCTCTT 3108496 29 100.0 38 ............................. GGGACGTAAGGAAGATCATAAGCAACTCCAAAAAGAGG 3108429 29 100.0 36 ............................. TTAGAAAGTAGCCTCATTGTTTTTTCCAACTTTTTA 3108364 29 100.0 38 ............................. ATGCAAAATCCCCAAATACTTTTAATAATGGAATTACA 3108297 29 100.0 36 ............................. GGAGACAACTAATCTAGGTGGAAATAAAAAGAAAAA 3108232 29 100.0 37 ............................. TAACATATTTTTCCAATAGATTTAGTTTTTTATTTAA 3108166 29 89.7 37 ......T.........G...T........ ATGTATATCCCAGCAATACTTTTTAGTTTAGACACTA 3108100 29 82.8 0 ......T.........G....C.TA.... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 96.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATGTTGTATATAAGATTGAGTAAATTCTATTGTATTAAATAATTTATTTTAGTTTATTTTAGTTTTGAGGGGGATTAATACAATGAGTGAAAATTTACTTAATGAATATAATTTAAAAACTGATGAAGATGTAGAATACTTTGTGAAGTTTGCTAATGCGTTATATGAACTAAAACAGAATAGCGAAGAAAAGTTTCAAGAATATGCAGAGATATTAAGAAGTATTCTTAGGGAACAACAGGAGAGAGAAAATAAGTAAAATAAATAGATAAAGTACTTGGATATTATGTTGTTTCAAGTGTTTTATATGGTGAAAAGTGGTATAATAGAGATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAATATGGCTTAATACTTGAAATATAAGGCATTGAGAACGTATGATAAGTGTTATCAATTGCACTATTGGTAGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGGAAATACTAAGTTTATTTTGGG # Right flank : TAAAAATAATTAAAAAACACTTACTTAGGTAGGTGTTTTTTTAGTTGAAAGTAGGTGATTATAACGTAAAAAGTAATAAACAGGTAAAATATGTAAGTAATATATGATATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTATATGTATGGATAATTTTTTGATTAGCGTATTAGCTAGTTTAACAGCTAGTCTAATCGGTTACATAGTTTGTATATGTATCAAAAAAGTAAAAAGCCACTCCGGCCAGAGTGACTTTAGTTTTGAACTAAAGATTAAGTTCAAAAAGAAACACTAATTTACGAACTCCACTCTAGTCTTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAAAAATATTGCCTATAATATTTTTATAGTCAATAAAAAGATGAAATTTTTTATACACAATGGTGATAAATCTAGCTGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 3463697-3460709 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020380.1 Clostridioides difficile strain DSM 102978 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3463696 29 100.0 37 ............................. CAACTAAGCAACTCATCATTATAATGTTTACTAACTA 3463630 29 100.0 37 ............................. CTATTTTTTAAATGTATTAAAAGAAAATATCAAAACT 3463564 29 100.0 37 ............................. AAATGTCCGAAATGTAATAAATGTAATAAAATTCAAA 3463498 29 100.0 35 ............................. ACGGGCAAAGAAGGATTCTCAACATCAGGAACTGT 3463434 29 100.0 38 ............................. TTCAATAAAATTTTAGCATAAATTTGTGATGAATTCTG 3463367 29 100.0 35 ............................. ATCTTTAATACAAAGTATAACACTTTATTATTATG 3463303 29 100.0 36 ............................. AAGTAAAGATGATATTGGAGATGATGAGTTGAAAAT 3463238 29 100.0 36 ............................. CCTTATGACCTACCGAGCGTTGGAACTGTTACAGTT 3463173 29 100.0 38 ............................. TCAATAATTAATTTGAAAAGACAATTAATTATTTCAGT 3463106 29 100.0 37 ............................. TTTTTTGTTTTATAACAATATCTTTCTTTGAAATAAG 3463040 29 100.0 37 ............................. CTTTTAGCTTTTTTGTTAGTGTTCTTTATTGCTGTTA 3462974 29 100.0 38 ............................. CAAAAAGTCTTGAATAATCTTTCAGGTTATATTTTAAA 3462907 29 100.0 36 ............................. CAATTGGAACTTTCTGCATCTGTGCGAGGTGTGTCT 3462842 29 100.0 37 ............................. TGATACAAATACTTTTTCTTTAACTCCAAGTTCTTTT 3462776 29 100.0 37 ............................. AGAGTGAAGTTTCATTAACTAAATATTAATGTCGTTT 3462710 29 100.0 37 ............................. TTTATTACATTTTTACTTTCAAAACTTGTAGCCATAT 3462644 29 100.0 38 ............................. AAAGAAGTACAAAAGAAGCTTGAAACAATGTATAATGG 3462577 29 100.0 37 ............................. TTATTGGCTGAATTTGATGGTTTTATGGATGATACTG 3462511 29 100.0 36 ............................. TAAATAGCGGGTCGACTTAATTCTAATATATCAAGA 3462446 29 100.0 36 ............................. ATCAATACGATTCTTATCAGAAAGAGTAGAACGAGG 3462381 29 100.0 38 ............................. TTCATTAAAATTACTAAAATCTAAACTAACCTTGTTAC 3462314 29 100.0 37 ............................. GCAGTTATAAGAGCGATTTTAGAAAATAATGTAATTA 3462248 29 100.0 37 ............................. ATGTTTTGAAAAATAACTTATTTTCTTAAACCACTCT 3462182 29 100.0 37 ............................. TCTTTTATAGAAAAAGTCATTCATTCTTAGCCTTTTC 3462116 29 100.0 37 ............................. TCATCATGGCAACTCGTAGGAATATAAATAGTGTTTG 3462050 29 100.0 37 ............................. GAGAAAAATTTTTAGCTCGCTGGTACATGCAAAACTT 3461984 29 100.0 37 ............................. TTTTCGGAGTAAATTCTTTTATTATTTCTTTTTCCTT 3461918 29 100.0 37 ............................. TATTGTCTATATCGACCATGCTCCAATTCTTTTCAAA 3461852 29 100.0 36 ............................. CTAAATCGGTTCTCTTCTTCACAAGCACGAAAGACC 3461787 29 100.0 37 ............................. ATATAATGCAGCGTAATACTCGGCGCAGCATGATTAA 3461721 29 100.0 36 ............................. CAAATATACAATTCCAGCTGCAAGACCTGCAACTGC 3461656 29 100.0 37 ............................. ACTTTTTGTTTGAAAGAAAAAGGATATTTTGCAAGAG 3461590 29 100.0 37 ............................. ATATCAATAGCAGGATTATCAACATTAGGAACTGTAA 3461524 29 100.0 37 ............................. TATATTAATAGAAAAGGCGAGTTTAAATATGTGATAA 3461458 29 100.0 38 ............................. GGTCTTACATTGGCTATAAGGTCACTTTCTACATTTTT 3461391 29 100.0 33 ............................. TTTAGTTATTTTTATATATAACAGTTCTTTCGC 3461329 29 96.6 36 ............................G CTTAATTTTTTAAGTTATTTGCAAGATATAAAACTA 3461264 29 96.6 38 ............................G ATCTCTGCTCTCTTTTGCAAATTGAGAATCTTTTAATA 3461197 29 96.6 35 ............................G TCTTTTTTAAGATCGTTTATATTATCCATTGCAGT 3461133 29 96.6 38 ............................G ATATATACCATCTTTAGTTTTACTTTTCTTTTTACATG 3461066 29 96.6 39 ............................G ATTGAAAGCAATCAAGTTTATCTTTCTTCTTATATAAAT 3460998 29 96.6 37 ............................G GAAATTGTTAATGTTGTTACTACTCTTGCTGTTGCTA 3460932 29 96.6 37 ............................G TTTTGAGTGTATGTTTCTTTTGTTTTATTATTTAAGA 3460866 29 89.7 36 ......................GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 3460801 29 79.3 35 ............TA...CA....A....A TTGTAGAATCAACAATAGCATATACTAAATCAGCC 3460737 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ======================================= ================== 46 29 98.3 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATCAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGGTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 7 3831600-3830955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020380.1 Clostridioides difficile strain DSM 102978 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3831599 29 100.0 37 ............................. TTTAAAACCTCATGAGAGGTAAGGGGATGATAAGTGT 3831533 29 100.0 37 ............................. TGTATCTACCTCGGTTCACATTTTTTCTTTTAATAGC 3831467 29 100.0 37 ............................. TTAGTTCCACTGTAAAAATATATCATTAAAAAACCTC 3831401 29 100.0 36 ............................. CCATGCTCCACCATCTGCTTCATATAATCCTGCTGC 3831336 29 100.0 37 ............................. TATTTTCATTTTTGAGAGTTACAAAACACTTCAACAA 3831270 29 100.0 0 ............................. - Deletion [3831242] 3831241 23 69.0 38 ------..........G...T.......G ATAGCAACTGGTAGCAACATAGCACTTATACTTGTAGC 3831180 29 86.2 38 A...............G...T.......G CCCATAGAACCAACATATTTAAATGTTTCACCCATTAG 3831113 29 82.8 36 A..............AG...T.......G AACTCTGCAAAGCTAGATTTTAAGTTATCAAAAACT 3831048 29 82.8 36 A..............AGA..T........ TCTTTAAAAGCATTGAAAGCATCACTCATACATTGT 3830983 29 79.3 0 ...............AG....T.CA...C | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 90.9 33 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCAACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAAATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTATGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TAAATAAACAAAGGAAGCACTTACTTTTTGGTAGGTGCTTTTATTTTGCTCAAATTGGTCGGTTGAGTAAAATAATTAGGAAAAATTGGTATAAGTAATTGACTTTTGTTGCCACATAAATTATAATATATTTGTAGCAACGAAAGTGAGGTGAAATAAATGCCACAAAAAAAGATGGGTCGTCCAACAGAAAGTGTAAAAGATACTATGATTAGAGTAAGAGCTGACAAAGATACTATTGATAAGTTAGATGAATGTGTGAATTTATTAGATAGTAATCGTTCTGAAATAATAAGAAAAGGTATAGACAAAATATATGATGACCTAAAAAAATAACAAAAATAGAGTGTTCGCCCGACCAAGTTTGAACACTCTATTTAAACACCAGAAGTTACCTTCTATGAAATATATTCTATCATAGTAAGGTACTTCTTACAATCAAATTTAAGGAGGAATTTACTATGAATGAATTAATGAATTTTGAAGGAAAAGAGATTGAA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.19%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //