Array 1 3988254-3989929 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR883965.1 Escherichia coli isolate 2016-17-550 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3988254 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 3988315 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 3988376 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 3988437 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 3988498 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 3988559 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 3988620 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 3988681 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 3988742 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 3988803 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 3988864 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 3988925 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 3988986 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 3989047 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 3989108 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 3989169 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 3989230 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 3989291 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 3989352 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 3989413 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 3989474 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 3989535 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 3989596 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 3989657 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 3989718 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 3989779 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 3989840 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 3989901 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4005431-4006068 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR883965.1 Escherichia coli isolate 2016-17-550 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4005431 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 4005492 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 4005553 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 4005614 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 4005675 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 4005736 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 4005796 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 4005857 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 4005918 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 4005979 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 4006040 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //