Array 1 566988-566657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH993793.1 Leptolyngbya sp. PCC 7375 Lepto7375DRAFT_LPA.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 566987 36 100.0 40 .................................... CAGTTTCATAGCGTCGGGAATATCGCTAGGGGTTTTGCAC 566911 36 100.0 34 .................................... CATTGGAGAGCTCAACGCAATCGTCTGTTCGTCT 566841 36 100.0 37 .................................... CTTAGCTTGTTCAGCCGCTACTTTTGCATCAGCTTCG 566768 36 100.0 40 .................................... ACCTATATTCCAGGCCACTAGATGACCCACAGTTACCGTG 566692 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 100.0 38 CCCAATTACTTCTTAGGAAGTAGAACTAATGGAAAC # Left flank : TAGTTTGGCGTTAGAGCAGCGTTATGGCAAGTTGTTGCGGCGGATGAGTTTGTTGTTTTTGCGAACGGGGGAGCGGGTGACCTATGGGGTGACCGATGAGCATCGGCGGCAGGTGGAGGCGATGATTGGTGAGTTGGCGTTGCGGTTGTTGGATGAGGAAGATTGGCAGCCTAAATGTGGGGAGCAGTGTGGGCAGTGTGCCTATGCGAGGTATTGTTCGGCGGTGGAGGCTGAACCGGAACCGTTGCCGGAGGTGCGGCAGAAGATACGGCGGTTGCAGCTGTGTTTGGGTATTTGAATATTGTCTTGGTGAAATGTTTACGAGGGTAAGGGTGTATTGCTGTGTTTCCTTTGGTTACGTTAGAACGCTCGGGTGGTTGATGTGTCTGGGTTTTTGGGGGTTTTTATAGGTGATACGAGAAGTGCTGATATGGGAAATATGCTATCCCTCGGAAACGTACGCTAGAATGGTTATCGTTTCGATGTTTTAGACGTTGGGA # Right flank : ACTTCGAAAGGCGAAAGGCGAAAGGCGAAAGGATGAAGGCGAAAGTAAGGATATCCAATCATGCAACAAGGATCGCTTTTGAGATTATCCAATCATGCAACACTTTTTGCACCCGACGACATCTCACTTTCGCCTTTCGCCCTTAGCCTTACGCCTTTCAGCAGCCTTACGCCTTTCCCTGCTTGAAAACAACAGTTCTGGACGACTTGATCAATGCGATCGCAACCATTTCTAAAAAGATACCAAGTACTGAAACCAATGAACAACTACTTGGCTTAGAAGGAGCAGCAGCAGCAGCTTACTATCAAGGCTTTGGCCAATGCATTTCCAATGGAGATTATAAATTGTAATCAATCGTTAGGATAATTGTTGGTCTAACCAATCATCCAATGCTTGAACTGATTCAAAGTTAGCTAATTCTGTTATCAACGTTTGCCACTGGATAGCGGAGAGTTGTAATAACCTTTGCTTTTGTTGTGGTGTAACAAAACCAATGCGTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAATTACTTCTTAGGAAGTAGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 784160-784509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH993797.1 Leptolyngbya sp. PCC 7375 Lepto7375DRAFT_LPA.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 784160 36 100.0 40 .................................... TCCTTTGATGATAAACAGGATGAGACCACAACACAAAACA 784236 36 100.0 42 .................................... ATAATTTGAGTTTCCCCGACAATTTGAGCGTCTAATACTGGG 784314 36 100.0 42 .................................... ACAAACAACAAGCCTGAGCCTGCTTTTCCGGGAACTTTGATA 784392 36 88.9 46 ...........AG.....A.......G......... TCGAGCAAGAAACGTTCACCAAGCGTATCGATTGATAGCTCTTTTA 784474 36 86.1 0 ...........AG.....A.......G........T | ========== ====== ====== ====== ==================================== ============================================== ================== 5 36 95.0 43 CTTTACCGATCGACTCAGGTCGGAATAGTTGGAAAC # Left flank : AGTTCGGGGAATAAGCTCCGCCTGAACCGCTACGACCAGAGAGAACAGGAAGCATAATAAATCTGACTAGAATGGCCTCATTATTCTAACGGCATTGTCCTCAAGCTGCAAATATGAAACTCACTAACCCCCACAAAAAAACCAGAACCCTCAACCCCCAGGCGTAGTGTGAGTTGCAGCCAGAGTGCGGCGATACACCTCCAGCTACGTAGCATAGGCTACCCAAAGTAGCCCATTACATGTCCTATAGTATGACAGTCATTTGCCACTTACAGTGGTCGCGCCCGGTCATGTGCTGGGCGTTTTTGTGTGTGGGCCAAGCCACGGATATGAGCTGATCGCTGAAAGCCCTATATTTTGGTTGACATCCGTGGGGCTCCTACTGGCAAGGGTTTCAAGAGCTGAGACCTTAAAACCTGAAGGCTGATAGAATAGGAGTATCGACATCCGTGGTTTGGCTGTCTGGAGCGTGCTCTATGACGGGCTTCTATTGGGGGTGT # Right flank : TGGCACATGTTCAACGGCTCTATCTGAGCCAATCTCAGTCACTGGCCTCGTTGTAATCCTCAAGACTTCTCCCGAAGTCAAACAAAAAGCAACCGCCCCGAGAATTCTCAAGGGCGGTTGCTTTTTATGGCCCCCTAAAAAGAGAGGACCGGCTAAACCTCGTATGAATCGGCTACGCCTTGATGAACTTGGGCGTTAGTGCTTTGAGCTGTCGGCGCATCTTCACGATCAGATGGTCCTCAGCCCCAGAGACTGCACACGCTTCCCAGTTAAGTTCTGATACCTCCAAGCAGAAGAGAGTAAAGCGTACTAGTGTCCATAGTACAAAGAGGAAAATGAGGCGGATTAAGGTTTTGGTTAGGTTAGTCATCGTCCTATGCCTCCGCCTTCAGTAGTCGAGATAACGGATACGCCGCCCAGGGTGTATCTGTGCCTTTCTTCCAGATGATGCAAGGCGTTTGGGTATCGTGTAGCAAGTACCACCATTGGCGGGCAGCCCA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATCGACTCAGGTCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2473926-2474482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH993797.1 Leptolyngbya sp. PCC 7375 Lepto7375DRAFT_LPA.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 2473926 35 100.0 38 ................................... TCGTCAGCAACGAACATGGAAATCAAATCGCTTTGATT 2473999 35 100.0 39 ................................... CTCTATTAATGTTACGCTGTCTTCATTGATAGCTTGAAA 2474073 35 100.0 41 ................................... ACCCGTTACCATTTTCTTTAGGAGGATTCTCCGTGGGAGGA 2474149 35 100.0 39 ................................... CAGATAGCTAACTTCACCGCTTCGAACCAAATAACTGGT 2474223 35 100.0 43 ................................... TTGAAAAGCTTGACTTTCCAATAGCTCGGGTCATTTGCTTTTT 2474301 35 100.0 37 ................................... TTAGCGTTGAAAGTGTACACATTAGACTGTGTGGTAA 2474373 35 97.1 40 ..............G.................... TCTCTTTCTCTTTCGCTACATCCCCCCAAAGCGATAGTTG 2474448 35 71.4 0 ........................C.ATTATGTTT | ========== ====== ====== ====== =================================== =========================================== ================== 8 35 96.1 40 CTTTCATTCCAATTACCCCGCAAGGGGACGGAAAC # Left flank : TGCATCAGCAAATAGCTCGACGAGTAAAGCCTGATGAGGATGATAATGTGAGGCTTTACTGGGTGCCGGTGGATGCCCTCCCGAGGGCTCTAACTATTGGTAGTGAGGCACCTGAGCCACCGCCGGATGCTTATATTATTTAGGCGTTGCTAGATCCCTTGTATGATTTCATCTGTAAGATACTTGATATAGGGCGTTTCTGTCAGACCGAGTCATTTTCTAAATTAGTAATGGCGTTATTTAAACTTAAAACTATGGTTAGTTTTGAGGAAAGTGGAGTAGCCTGGTTTAAATATTAGTGGGGGAAATCCTCCACATCATGCATGTACCTTGAAAACCAAATAATTCCGTTGACCTATGGAGATGCCTTACCATACACGGCTTTCAGTCATGTCAGAATGGCTGCACTGGTCGATTTTGTTAAGTATTCCGTTAGTAAAATTGACCTATGGAGATTTGCACGCTAGGATTGACTCCAGGCAAAGGCTTCTCAGAGGTCC # Right flank : TGCTGTCAAGGGCGGTTATTGAAAAAACATGAGAATACAGCGTTGCAACAGTGGGTTCTCACCGTCTTTTTGACGGCAAATGTTGAAAATCAATCACACTCCTCTATTCTCTCTTTTCTAGTGTTAAAAAGGAGCAACAACTTATCTAAATTGATCAGAAAAAGGTTCTACATTTGCACAGAAAAAAGCGCTGTGACCATGGAAACTAGGTCATTTGGAAGAATGCTGTGACTTTGTTGTCATCCCAGGGTTCATTCTTCTTGACCATTGCGTTCAAACAGATGATAAACTTTCTCATACACGCAATAATCGCCACCTTCTTAGCTTTCCCTCTGGCCAGTAGCTGTTGATATAAGGCACGAATCGGTGGATTGCACTTCAGCGCTGATAAAGTGGCCATGTATAGCAGCGCCCGCACCGCGCCTCGACCGCCCCAAATACGTCGCTGTCCCTGAAAGCGACCGCTGTCTCGATTAAAGGGCGCAACACCGACCAACGCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATTCCAATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 2486549-2487957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH993797.1 Leptolyngbya sp. PCC 7375 Lepto7375DRAFT_LPA.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2486549 37 100.0 34 ..................................... GTCTCCATGTCCCAATAAGCGCCGTTTCTCGCCT 2486620 37 100.0 35 ..................................... CAGGCAAGTTATACCCAGGGCGGGCAAACTTGAGA 2486692 37 100.0 35 ..................................... ATAATCACACCCCCGCAAAATCTCCAAAACTTCAG 2486764 37 100.0 35 ..................................... AATTTCTGGGCTTGATCCTGTTGCGATGAAAGAAA 2486836 37 100.0 35 ..................................... AGTTGATAATTAATTGAGTTAAACTAATTAGTGAA 2486908 37 100.0 42 ..................................... GGTAAGCAAGCTCTTGTCGGAGGGAAACCAACTCGGACTACT 2486987 37 100.0 34 ..................................... GGATTGGGCTGACTTGTCCGACGAGCAAAGAGAG 2487058 37 100.0 35 ..................................... GAAACCCACCCACAACTAGCAAGTCGCTCCTGTCT 2487130 37 100.0 35 ..................................... ACTCCGTAGTCTTGGCAACGCAGCAATAGATCCAA 2487202 37 100.0 35 ..................................... ACTTACACCCCTGGAGCAAATCCAATTGAGCGGCT 2487274 37 100.0 35 ..................................... TACCAGTACCTTGGCCTGCACCAGAGCATCCAGAA 2487346 37 100.0 35 ..................................... AGATTAGAAGCCCAGATTCGTAGGCTTGAGTCTAG 2487418 37 100.0 34 ..................................... TTTGAAACATCGGATTTCATTTTCTCCACAATTT 2487489 37 100.0 36 ..................................... GGGTCTTCAATCGTGCCAGTGGCGCAAAATGTTTCA 2487562 37 100.0 34 ..................................... AAATTCTCAGGTGGACGCAACCCGACTATTCTAT 2487633 37 100.0 34 ..................................... GTTGCTTCCCGTTACTGATCCCTCAGTGGTGGGC 2487704 37 100.0 36 ..................................... CTAGAGATTGTTTCTGTGCCTTGACGACTCATAATC 2487777 37 100.0 35 ..................................... AGAGAAGTACGCGACACCTAAAAAGAAGGAATCTA 2487849 37 100.0 35 ..................................... CAAACACTTTTCTATCCATAATGAGCCATCGTTGA 2487921 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 100.0 35 GTCACAACCAACCACTTCCCCTCACGGGGATTGAAAC # Left flank : ACGGCTAATCAGCAAACGGGTTTAACCTCTCCAGAGATTATTGCTGACTATACTGGCGGTACAAAGTCGATGACAGCGGGTATTGTATTGGCCTGCACTGAGCCCAATCGGCCATTACAGTATTTACTAAGCCAGTACGGAGCTAATGGAGAAATTACAGCCTCCCAATTGATGAAAGTAATGCTGTCTTACCGTATACGAGCTGTTAGATGATAATAAGAAGCGTTACAGATGTTTCCAGCCGTAATCAGCGCGACTGCATAGCTGTTTTCTATGGCAGGCAGCTCTTAGAGCAATGAAAGCCTTTGCCAGAGCCACTTAGCAACATTTTGAACGTCTATGGGGTCCGCGCAAATGCTGGAACATTAGTAAAAGCAATACTTTGAAGGATTAAGGCAACCTGAAAAAATGTATTTTTACTCGACGGTTGACTATAATAGGGTAGCTTCGCGCAAATGCACCTTGAAAACTAAATGCAGTCAACGTTTCAATTGGCTGCA # Right flank : CAAGTCTTTTGATCACTCCGATCAGACTATTCCTTGTCACAACCAACCACATTATTTTCATGCAGACACCTTAGTCCAAAGTGACAGAGATCAAGAATTAAGCCAAAAATAAGCCAGCTATACAGTAGCTTTTCTGAATCTAAGACATAGTGAGCCATTAGCGCTCCAATTCGTTTCGTTTTTTGTAACTCAGAGGACATCCGGGCTCAGCATCAGCCATACTAGCGGCCATAGTTGCCTGTATGGAAATCGGCCTATGGTTATCCCCATCATTCCAGCTCAACTGAGCATTTTCAAAGATGCACGGGATTATCAGATCTTGTGTTTAGCCTTATTTCTAGTTTTAGGTGTTGCCATGCGCGATTGGTCACTACAGCCAGCCATCGTCGCTACAGCAATCATCACAGCGTTGGGGAGCCAGGGGTTATGTTCTTGGCTAATGTCTCACAATTCATCATCAAACCAGCTGCAAACAATATCTCCAGCTGAATTCAACTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAACCAACCACTTCCCCTCACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 4 3121190-3123177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH993797.1 Leptolyngbya sp. PCC 7375 Lepto7375DRAFT_LPA.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3121190 37 100.0 34 ..................................... ATCAAGGATGATTGTATCCCCACCCGCAATGAAA 3121261 37 100.0 35 ..................................... AAGTGATCCGCCTGGGGACGGTATCTGGCGAGTGA 3121333 37 100.0 35 ..................................... CGGATATACTCTGTTACCTGCTCTCAAAAGCCTCA 3121405 37 100.0 34 ..................................... AGATTGGTCCTCAAACACTCGCCACAGGGGAACG 3121476 37 100.0 35 ..................................... TGGGATAAAATTAACTTATAAGCGAATTCCATCTG 3121548 37 100.0 40 ..................................... AGTTTGCATTACTGCCCTGCTGAAGACAGCTCGATACTCT 3121625 37 100.0 36 ..................................... AACATCATTTTGACTACTTCCATAAAGTATCAACGC 3121698 37 100.0 34 ..................................... TCCCCTGAGATTACAGATATCTCCGTAATAGGGC 3121769 37 100.0 35 ..................................... GCTTAAGCCAGTAGTCGTCGCGATCGCTCCAGGTC 3121841 37 100.0 35 ..................................... AATTTGGTTTTCCGCCACACTGGCTAGCCGTAGAT 3121913 37 100.0 34 ..................................... TGAAGAGGGTAAACATCCCAGGGGTACAGATGGA 3121984 37 100.0 36 ..................................... ATGGTCTAACTCTTGCTTGTGTAGAACCTCCAGGTC 3122057 37 100.0 35 ..................................... TGATCGAACTCGCGATCGAGACAGACTGGCAGATT 3122129 37 100.0 34 ..................................... AAATAAAAACGCTATCAGCAAGTTTTCTGTACCC 3122200 37 100.0 34 ..................................... TTAACCTCTTTTAAACTGGCAAAAATGTCAAAAC 3122271 37 100.0 36 ..................................... TTTTACTTCGGAGTTGAGAACTAGCATGGGTAGTGG 3122344 37 100.0 36 ..................................... CTGCTCTTCGGGCTCTCTCAGCCACAACAATAGCCT 3122417 37 100.0 36 ..................................... GTCGAAATTGTCACCTTCGAAATGTTTCATGATTTA 3122490 37 100.0 36 ..................................... ACGGCTTAAATGGCAAGGCTCCCCTATTGTGTTGTT 3122563 37 100.0 35 ..................................... AGTCGGATAGTAGGAGGTGCCATTATTTGGGTAGG 3122635 37 100.0 37 ..................................... TAGAGAGATTAATTCTTCACTGAAACCTTTCTGTAAG 3122709 37 100.0 34 ..................................... TGGTTTCCGGATTATAGATCAAGCTATAAAGAGC 3122780 37 100.0 36 ..................................... AGCGAGATCACCGGCTTCGCGATGAACGAAACGCTG 3122853 37 100.0 35 ..................................... AGGTCCTGAGTGGTGAATCCAGGAGCTAATACTGC 3122925 37 100.0 36 ..................................... TCGGGATGTCGTACCCGTTTCGCTCTAAGCGCTGCA 3122998 37 100.0 34 ..................................... AATAAGGAGAAAGCTAAGCTGGCGCAAGAGACCT 3123069 37 100.0 35 ..................................... CTAAATATAGACTGATCCGTTTTGGTTCTGGGAAC 3123141 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 28 37 100.0 35 GTCACAATCAACCACTTCCCCTCACGGGGATTGAAAC # Left flank : CCGCCTTGGACTCAAAGTCGCAAGGCTAACTGGCTCAAAACCGCTCAAGCGGTTAAAGAATCCCTAGAAGCTCTATATCTAGGGCTGCCCAGCCAATCTTGTCCCTTGAGTGGACAGCCCTCAATTAGCGTTGGGTTTTGAACCCAACGTGGGTTTGAGCTTCACAACCGACCTTGGTGCAAGATCTGAATTTTACCTACCTATTGATCTAAGACGGTTATCATATTCATGTCTTGTGCTGCCATAGGTTGCGCGACTATGGGGCTGTGTTCTGTGGCAGGCTGAATAAAGGGGGGTGAAAAGCTTTGTCAGAGCCAATTAGCGGCTTTTTGCTCGTCCATGGGATCCGCGCAAGCGCTGGAAGGCTTATCAATTCAATGTTTTGTAGGATTAAGGTAATTTAAAGAAGTGCACATTTACTTGGCTGAGAACTATAATGGGGTAGGTTCGCGCAAATGTACCTTGAAAACTAAATGCAGCCAACGTTTCAATGGGCTGCT # Right flank : CAAATAGACTTCCTGATCGGGGTTACCACCGGGTGTAATCACTATCAACCCACCCATCCACCCATCACTCCAACTCCCCCAACTCCCGCATCACCCGCCTCGCCAACTTCGAATACGTCTTCGCCGTCTCATAAGCCAACTCCATATCATCCGCAATCTCTTGCAACGAATCCCCCATCTCCCGACGCGCCAGAATCGTCGCCCACGTCTCAGCCGTATCAATAGCACGACGACCACCCTGACGTTTTTTAGTAGAGAGAAATATCTCCGTCAATTCGTCCATACGTTCAGCCAGCAATCGCTGCTGAGTCGGCACCTGGGGTGATACCTGGGCCGTATGCCACCCCAACTGAGTTTCCCCTAAACCAAAAGTAGTTTTATGACCTGTGCCACAATAAGGAGCCAACTGAGTCAGGGCATAAAACATAGCCACAAAAGGTCGTTCAGTGATACCGCGTCGGTCAAGCGCATAGGTCACAGCACCGGTAAACCCGGTTACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATCAACCACTTCCCCTCACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 5 3627989-3629978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH993797.1 Leptolyngbya sp. PCC 7375 Lepto7375DRAFT_LPA.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3627989 37 100.0 37 ..................................... AGAGCTTCATTTGGCTGGCTACGACATAATTGCTGAC 3628063 37 100.0 34 ..................................... GCCAAGGATGTATGCGGGGGAGGTGACCTCGGAT 3628134 37 100.0 39 ..................................... ACATACTGCGGACTTCCCTAGCCAGCAGTACTGATCAGC 3628210 37 100.0 34 ..................................... AAATAGTCTTTTCCTTAGCAATGCGCCCAACTTA 3628281 37 100.0 35 ..................................... TGGTAAACGTAAAGACTACGGATGAATTAAAAGAA 3628353 37 100.0 35 ..................................... CAGCAGTAGTCTTATCCCAAACCGGATCGCTACTA 3628425 37 100.0 36 ..................................... AAGAAGGCTGCAAACATTGACAAGCCCATCCGTGAG 3628498 37 100.0 34 ..................................... CAATAAAGAGATTTTGGGGATTACGGGCATTGAA 3628569 37 100.0 34 ..................................... TCATCCATCTCGACCCCAACCGGCAGATAGTTGG 3628640 37 100.0 39 ..................................... AAGAATCCTTGGGGTAAGGACTGGTTAGTCAGTGTCAAC 3628716 37 100.0 34 ..................................... AAACTGCACACGCTTTTATATGAAATTAGCGTTA 3628787 37 100.0 34 ..................................... AGGAAACAAATACCATTGCTGTAACCAATCCCAG 3628858 37 100.0 35 ..................................... CTTACAAGAAGCGGTAGGAAAAACCTCTATACCCG 3628930 37 100.0 34 ..................................... TCATCGTTAGGTGCATCGGGTAGAGGCATCCAAT 3629001 37 100.0 35 ..................................... TCTGTATTCAAGGTGCTCTAATAGACGTGTTCATC 3629073 37 100.0 35 ..................................... AAGCACCCAGGCTTCGATCCGTAAGTCTTCGGTGG 3629145 37 100.0 35 ..................................... GTATCAATGATCTTGATCCGCTCTATATTCATTTC 3629217 37 100.0 34 ..................................... TTCGAAGAGATGACTGTATTTGCTGATGTCGATG 3629288 37 100.0 39 ..................................... AGGAAACCCTGAAACAGATGGGGAACGACGGAGTCCTAA 3629364 37 100.0 35 ..................................... ATCCAAAGTCAACTGGCTGGATTTCAACCCATGAA 3629436 37 100.0 38 ..................................... TCCACTGAGATAGGGCAAGGCCAGTTGACGGTGGCTAG 3629511 37 100.0 34 ..................................... CTGATACGTACGCTTCACATCACTACTGATCCGG 3629582 37 100.0 34 ..................................... TGATACAAGCCACTTATAAATCTACTAAACATGA 3629653 37 100.0 37 ..................................... CCCTCATTTGGCCTATATCACGATGCCAGAGCGGGTC 3629727 37 100.0 36 ..................................... TAGAGTTTTCCGAAGACAAAAAAGATTTCATACTCT 3629800 37 100.0 35 ..................................... TTTTATTAAGCTACAGTTGGGGTTGATCAACTTTC 3629872 37 100.0 33 ..................................... AAAAGAGTGAGATCGCACTCCGTGGACGAACAA 3629942 36 89.2 0 ...........................A..-AA.... | T [3629977] ========== ====== ====== ====== ===================================== ======================================= ================== 28 37 99.6 35 GTCACAAAACCCTCCAAACCCTCTCAGGGATTGAAAC # Left flank : GCCGCACCAAAATTCATAAGATTCTGACATCCTATGGTCAATGGATGCAGTTTAGTGTGTTTGAGTGTAGTCTTACAACAACTCAATACGCAAAGTTACGCAATCGCCTGAATCAGCTGATTAAGCCTGAAGAAGATAGTATTCGGTTTTATTTTTTATGTGAGTGTTGTCAGAAAAAGGTTGAGCGTATTGGTGGAGAACCAGTGCGGGATGACACTGTATTTTTTGCTTAATTTTTTGGTTAGAAACTTGCACGCGGATAGGTAGGTGTTTGAAGTGGCTGACGCTGAAATCTGTGGGATTGACTGATATGCAAAGGTTACAGTGATCTTTACAGGTTTAAGGGTTCGCGCAATGGCTGAAATGCTTGTATGGCTTAGGGTTATGCTTTTTTATTTGGCCTCTAGATGCTTCGGATTTGGTCAGCGATGCTATTATTTGGACAGTTCGCGCATTCGAACCTTGAAAACTAAATATTTCAAGGCTTTTCAAGGCCCGCC # Right flank : CTAATCAAACCCATCAATTGGAGCGAAGCCTTGACGTTGAATATTTTCTGTCACTACGCGAGGCTCCATAAATTGAAGAAGATAATCAGCACCTCCAGCTTTTGAACCAACACCAGAGAGCTTAAAACCACCAAAAGGCTGGCGAGCAACAATGGCACCCGTAATCCCCCGATTAATATAGAGATTACCAACGTCAAAGGTAGTTTGAACTTGTTCTATATGGGCAGGGGTACGAGAATAGAGACCACCCGTGAGGGCATAGTCAGTATTGTTAGCAATAGTCAGCGCTTCTTCAAACGTTTTCGCCGAGATAACAGCAACGACAGGGCCAAAGATTTCTTGTTGAGCAATCTGCGCATCGGGAGAAACATTGATAAAAATAGTAGGACCAATAAAGTAACCAAAATTAGGAGATTCGATTGAGAGAGCCAAATCACCTTCTCTTCTACCAATCTCAATAAATTCCTGAATTCGTTGCTGGGATACGGCATCAATCACCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAAAACCCTCCAAACCCTCTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 6 3929954-3930856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH993797.1 Leptolyngbya sp. PCC 7375 Lepto7375DRAFT_LPA.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 3929954 35 100.0 36 ................................... ACTGGGCTGGACTGGCACCTCATCAGGCTGTGAAAC 3930025 35 100.0 36 ................................... CAGTATAAATGGCATTGCGCTCCCAAGTAACTGATT 3930096 35 100.0 37 ................................... CAATGTGGCCCGTGATGTTGTAGTCTCCACCGATACG 3930168 35 100.0 36 ................................... GTTGCGACCGATATAAAAATCAATCGAACCGTCCTC 3930239 35 97.1 32 ................T.................. GTTAGCTTCAGTGTTAGGCTCGGCTACTTCAG 3930306 35 100.0 36 ................................... AGATGCAGGAAATATCAAAGACATGTAATCAAGAAC 3930377 35 100.0 37 ................................... ATGTCTCCGTTTTCAGAGTTGGTGTAACCACCCTGAA 3930449 35 100.0 38 ................................... TCTTGAGCAGAGGTGAAGTTCTCTGCGACATTGGAACC 3930522 35 100.0 39 ................................... TAACTGAAACCATCACAGGCTGTTGGAATGGCGTTAAAA 3930596 35 100.0 37 ................................... CGGGTAACAATAACGTTACCGGAATCAACCGTAATGT 3930668 35 100.0 43 ................................... TCGGGGATGAAATATGGCTGGTCCGTGGGACCCATTACGCTGC 3930746 34 82.9 41 TGC..-.A............C.............. TTAAAGCATCCTATTTGGGTCATCCACAATATCGTCTTCCA 3930821 35 94.3 0 ....CA............................. | G [3930824] ========== ====== ====== ====== =================================== =========================================== ================== 13 35 98.0 37 GTTCAGATTCCATTACCCCGAAAGGGGACGGAAAC # Left flank : CGGTTGAAGCAGCAGAACCGGTGGCTATTAGGCCTGGCTATCGTTGTGTTGGCGGCCACCTCGCTATTGCTGTTCGGCGATTCCGATACGCTGGAGCTGATTTGCAAAACCGTGCTGTCCGTGATCGGCATTGTCAGCGCGATCGCAGGCTTCAATCATGAAAAAACATCCCAGAATTAATCTGACTGGGTGCGAGCGATGACAGACCAAAGGAGCCCAGATAGCCGACCCACAAGGCTCTTAGAAATTGCACTCAAAATATTAAAAATTCATCAGAGGGGTTAGGATTTAAATATCCTGATGCTAATCTGAGGGGGTTAGACGAACCTTGAAAACCTAATTCTTCCGTTGACCCCCTCAGATTGATTACTGTGAGGGACATTCAAACGTTTTTCACAGGGTCTTATTGGGAGTCATTTTCGATTGTGTGGGGTCAGTTTTGCCCCCCTCAGATTTAGGTATCTGGAAAGCCCTAACCACAGTAGTTTCAAAAGGTAGGG # Right flank : CTTGTAATGCTGCAAATAATCGTGTTCTTCGCCTTCCTGTAGGTTGCCAATTCCATTACCCCTCTAAACATACAAGGGGACGGAAATGACTAGAATTTGCCCAGACTGACGTGAGGGTATGTAGATATCGCACTGGTGGTTAGTTACTTGGCCCGCTGCTTGAGGCGCAACTAATCAATTTCAAAAAAACAGCCCTGACCTTTACGGGACAGGGCTTTGGTCTTCTAAGTCAAGGAAAGTAGTACATCGCTAATGAAGCATGTATTAGCACGCAACGAAGTATTGCGTCATGCCGCCCTTAGCCATCAGGGGCGGCATTTTTTAAATAAAAAATCCCTTGGCCGGTTCAAGCCAAGGGACGCAAATAGAATCATTCAGAGTCCAGTGAGCACCCTTGTGTCTTGAGCAATATCTGAAATTGACTACTGAGTACCTTCAAGAGTTGCTAACGCCTGATAGTTTGAGCGCTTTGGCTTGAAAGCTATCAGCAATTTGTCTCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAGATTCCATTACCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 7 4435489-4437113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH993797.1 Leptolyngbya sp. PCC 7375 Lepto7375DRAFT_LPA.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4435489 37 100.0 41 ..................................... TTAACCTGCTTGGCAACCTCCTGCAACACTTGAGGTCACAA 4435567 37 100.0 34 ..................................... AGATCAACATCTCTTGGAAGCTTGGACAAGGGCG 4435638 37 100.0 35 ..................................... CATCGATCTCATTGCCTGAACTGCCATCCGTGCCC 4435710 37 100.0 35 ..................................... TTCTTTGATCGAATCCCAGAGGGTCGATTTTGTCG 4435782 37 100.0 34 ..................................... GATTTAATTTGATTCGCTTAGTATGTGTGTGTCC 4435853 37 100.0 34 ..................................... AATTTCTGCCTGTTGTTCGATGTATTGCTTAATT 4435924 37 100.0 34 ..................................... ATCCCAATAACTCCAGGAGAATACAGGTGCAAAC 4435995 37 100.0 36 ..................................... TATGATTCGGTGCTAACGCAATGGAAAACCGTACAA 4436068 37 100.0 34 ..................................... GTAAATTCATCAAATGCCGCCGCCATCTCATCAC 4436139 37 100.0 34 ..................................... TCAATCCAGATAATCAATGTGTCGAGTGTGTTGA 4436210 37 100.0 34 ..................................... ACTTTCCCCAAGTGCCAAGGCGCTTCTTTGCTGG 4436281 37 100.0 36 ..................................... TCCAATTACTTATTACAGAAAAACAATCATACACTT 4436354 37 100.0 36 ..................................... TAGTGGTCGGTGTAATCAGGCAGGAAACCCTCTGGT 4436427 37 100.0 34 ..................................... GGGGTGCATCCGGCGGGACCATACTTGGTTAGCG 4436498 37 100.0 36 ..................................... TCTTCGTTCCAAGTGACGCTCATTCCCTTAGAACTC 4436571 37 100.0 40 ..................................... AATATTGCTGAAAACATGAAACGAGATGGATTCATCCCAC 4436648 37 100.0 35 ..................................... GACTGAAGACGCTTCATTTTCATAATGGTGATTTA 4436720 37 100.0 34 ..................................... CATCTGATCGGGTAGTACCCTTGGTGGAACTCCC 4436791 37 100.0 35 ..................................... TATGTAGACACTGGGGGATAGGCCCCTTGACTGAC 4436863 37 100.0 34 ..................................... AACTTTCAGAATCACGATCGCAGATTTTTTAGCG 4436934 37 100.0 35 ..................................... TCACCCAAGATCCGATTATAAGCTTGTCGTCGTTC 4437006 37 100.0 34 ..................................... ATGCTATCAGGATCGATCGCCCTTTGTTCTTCTC 4437077 37 81.1 0 .............................C.ACCGTG | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 99.2 35 GTCACAATCAACCACTTCCCCTCACGGGGATTGAAAC # Left flank : GATAATGGCGAGCAGGCAACAGTGCTGGATATTTTAGCTCGGCGCAATCCGCAGGATGCTTATTATCGAGCTTGGATACGCCTGGGGGATATTAATATTGTGATGCGGCTCCGGGACTGGCGGCCTAAAGGTGAGGTGATTGCCCCCCTGGCATTACGTCAGCGGATGCAGGCAGAGGCGGATGCTGAGTTGAGGCATTATCAGGGTTGATGGGGCTAAACTAATGTAATGTCTGGTGCTGCCATCGGCTGCGCGACTGTGGGGCTGTGTTCTGTGGCAGGCTGAATAAAGGGGGATGAAAAGCTTTGTCAGAGCGAATTAGCGGCTTTTTGCTCGTCTTTGGGATCCGCGCAAGTGCTGGAAGGCTTATCAGTTCAATGTTTCGTAGGATTAAGGTAACTTGAAGAAGTGCACATTTACTGGGCTGAGAACTATAATGGGGTAGGTTCGCGCAAATGTACCTTGAAAACTAAATGCAGCCAACGTTTCAATAGGCTGAC # Right flank : GTACACACAAGTCCTGGAAACTAGCGTTCGCGATTGTCTAACCCCCTCTAACTCCCCCTTGGTAAGCTACGGTGTATACATAAGTCAGAGAGAATGGCCAAAACCCCTGAAGATTCAGTAGTTTCAAATACCCTGCTTAGGGTTCCCCTTGGATAAGGCTACCGTGTACACACATCTCGAAAGATAATGCCCTAAAAGGTAGCCTTGGCCTTGAATTGGCCCTCATCCTAAATCCTTCTCCCTGGGGGAGAAGGACTTTGAGGTCAGGCCCCCCTTCTCCCTCAGGGAGTAAGGGGTTGGGGGATGAGGGCTCGATACTTGGAGCTACTCTTCGACTTATGTATACACGGTAGCCTTGGTAAGGGGGAGGACTGGAGCTTCACCCCTTACCAAGGGGGGATTAAGGGGGGTAATGCAGGATTGTGAACTTCCTTTCGAGATGTGTGTACACGGTAGCCTCACGGGGTGAAATAGGCAAAGCGTATCTACACGCTCACTAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAATCAACCACTTCCCCTCACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 8 4815017-4818617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH993797.1 Leptolyngbya sp. PCC 7375 Lepto7375DRAFT_LPA.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 4815017 37 100.0 41 ..................................... CCAGATCTTAATTTCTTCTGTGCGTATAAGCACAGGATCTA 4815095 37 100.0 35 ..................................... GAGAAGCATCATGATTTTTGCCACACCGTTGAGAT 4815167 37 100.0 36 ..................................... TTTTGAGTCTTCGGATCAGCCTAATCTCGTGTGGCT 4815240 37 100.0 35 ..................................... CCGGATTTGCTGGGGAGATAATTCAGGGCCATATC 4815312 37 100.0 35 ..................................... AAGAGGAATCATCAGATCTTTCTTCGACTTCTCTG 4815384 37 100.0 36 ..................................... AGCGGGAGGAATGGTTAGTCTGGCTTTCCTGCATTT 4815457 37 100.0 35 ..................................... CCTGGGGGTCTTGCGATCGCGCTTGGTCTAGCCCC 4815529 37 100.0 35 ..................................... AAAGAAATTGCAATCATCGATAAACTAAATTTCAT 4815601 37 100.0 37 ..................................... AAGCCATCAGCGGCCAATCCACAGCGCAATGGGCCAA 4815675 37 100.0 35 ..................................... ACTGCGCCAGGAATACCGTAATCTCTCAGCCAATT 4815747 37 100.0 35 ..................................... GTGAGCGCTTTGTAGACGCTTACAGAGAGGCCTAG 4815819 37 100.0 34 ..................................... ATTGTACGCCGCATACTCCGTAGCTTCGTCTATC 4815890 37 100.0 36 ..................................... GGCATTTCCCCATATCATCCAGAAGCAATCGGAAAC 4815963 37 100.0 36 ..................................... ACTGAGGCTGTGGCAACCGACTAAGTTCGCTGAGAT 4816036 37 100.0 36 ..................................... CGCTGATAGAACTGAGTGGCCAGCGTGAATGCCCCT 4816109 37 100.0 34 ..................................... GCACAGGAACTTTCCGAACCAAATACAGAGGAAG 4816180 37 100.0 34 ..................................... CACCATCAAAACAGCTAAGGTCACCCGGAAAGCT 4816251 37 100.0 36 ..................................... GATATCGAATTATCACGAGCAATTATGAGTAGAGGC 4816324 37 100.0 34 ..................................... ACCATGAAAAAACAGAAAGTAAGTGTTTACTTTC 4816395 37 100.0 40 ..................................... TTCGAGGAAATTACAGTGGGTAGAAGCTCAGGTGGAGGTG 4816472 37 100.0 34 ..................................... CCTGAGAGCCAGGCTTACTTCAGAGGGCTTCCCT 4816543 37 100.0 35 ..................................... TACAAAGCGCTCACAACTCATTCAAAGTATATCTA 4816615 37 100.0 35 ..................................... CAAAATTAGTCCATCTATTAATCTAATTAACTCAA 4816687 37 100.0 35 ..................................... TTTTCCCATTTGCCGGTCAATGGGTCACACTTTAC 4816759 37 100.0 36 ..................................... ATCTAAACATTCATAGATGTCTTCCAAAATCACGGT 4816832 37 100.0 34 ..................................... ACCACGCTCCTGGGCTGGAAGCGATTGCCATTCC 4816903 37 100.0 35 ..................................... CTCTATCCTGAGAAGAGTACTGGCGTAGATATTCG 4816975 37 100.0 36 ..................................... TTGGAGTGCGGCTAGCAGGAAGATTGATGGAACTGC 4817048 37 100.0 36 ..................................... AGAATTTCAGAGATGGTTGTCATTACCCTTCCTCAA 4817121 37 100.0 36 ..................................... CTCTAAATTCTCAAGACGATCATTCGCTTCTGCTAA 4817194 37 100.0 34 ..................................... TAGCTGGCTAATCCAAAAACTTCGCACTGACCTG 4817265 37 100.0 35 ..................................... CTTTAGATCAGGCCGATTTGTTTTCATCGGAGGTT 4817337 37 100.0 36 ..................................... ATCAATGAAGCTCATTCAAGGAAATTATACATGTGC 4817410 37 100.0 34 ..................................... TTAGAGTGATCGATAATAGCTTCTTGATATGCTG 4817481 37 100.0 34 ..................................... ATCTTACTAAACAAGAAGCGTTTGCCAAACCAAC 4817552 37 100.0 35 ..................................... TCTACAAGAACTTCTTCAAGATTGACGTATCTTCC 4817624 37 100.0 37 ..................................... GACAGTGACGGCGCATTAGTGGTTGATTCGCGACTGT 4817698 37 100.0 37 ..................................... TAAGCTGCAATCCGCCAGTAGCAGCGCTCCTGTGATT 4817772 37 100.0 37 ..................................... TTCTCCCAGTCAGCGATCGCAGCCTTCTCAGACTCAA 4817846 37 100.0 34 ..................................... AATCACTGCAATGCGCAATAGACAATGGCATTCA 4817917 37 100.0 35 ..................................... TACCCAATAAGACTCACCATTCACTTCTATTTCCA 4817989 37 100.0 37 ..................................... ACATCAGGAATCTCATCGGCCCCTGTGAAAATCGTGG 4818063 37 100.0 37 ..................................... AACTGAACAACAATTTGGTTTGGTAGCTGGTCCTGCT 4818137 37 100.0 47 ..................................... TCTTTTCAGAAGCTCAAACAGTGTGCCTACAATTAGGCGATAGGGGC 4818221 37 100.0 34 ..................................... AGAATTTCGATTAACTCAGCTTTTCGATATTTTG 4818292 37 100.0 34 ..................................... CGTCTTGAGTTGCGCTCTGTAATTCTCAATAGTC 4818363 37 97.3 34 ..............................C...... GATCGGATAAATTTTCTTTAGCGCTTGGACACTC 4818434 37 97.3 36 ...........T......................... TGCTACTCAGTGCATCTCCTGAAACGCTTGTTGCTC 4818507 37 100.0 34 ..................................... GTGATTAGCTCAAGCACTCGTTGCTCCTCATCAG 4818578 37 86.5 0 ....................T......CT.G...C.. | CG,T [4818608,4818613] ========== ====== ====== ====== ===================================== =============================================== ================== 50 37 99.6 36 GTCACAACCAACCACTTCCCCTCACGGGGATTGAAAC # Left flank : TTAATAAGTATTTACGAGGTCCTGTGCTGAGTGGTTCAACGCATCCAGGTAGGCTGTTAAGATTTGCCCTGAGTCGGCAGTTTACCCTGAGGCTTTAAAGAGGTTTTAGGTTTTAGGTCTTAGTTTTCAGGGTTATCCGTTTAAGCTGGGAAACTCTGGATAGGTGGGGCGTCAGGCGTCAGCTACCTACGGGGGCTGCCCATTAGTAATGATGGTTACCTTATGTTTAATGTTTGGTGCTGTCATGGGTTGCGCGACTGTGTAGTTGTTTGCTGTGGCAGGCTGAATAAAGGGGGATGAAAAGCTTTGGCAGAGCCAATTAGCGGCTTTTTGCTTGTCCATGGGATCCGCGCAAGTGCTGGAAGGCTTATCAGTTCAATGTTTCGTAGGATTAAGGTAATTTGAAGAAGTGCACATTTACTGGGCTGAGAACTATAATGGGGTAGATTCGCGCAAATGTACCTTGAAAACTAAATGCAGCCAACGTTTCAATGGGCTGC # Right flank : CACAAGTATTGGAACCTAGCGGTTGCGGTTGCCTCACCCCCCCTCTAACTCCCCCTAAAGCCCTCCGGGCATGGGCTAAAGCCTAAGGTAAGGGGGAGGACTGGAGTTTCCCCCCTTACCAACTACGGTGTATACACATCTAAAAAATAATGTCTCAAAAGGTAGGCCTGTCCTTGAATTGGCCCTCATCCTAAATCCTTCTCCCTGGGGGCGAAGGACTTTGAGGCTAGGCCCCCCTTCTCCCTCAGGGAGTAAGGGGTTGGGGGATGAGGGCTCGAAATATAGAGCTAGCTCTCCGACTTATGTATACACGGTAGCTTACCAAGGGAGGTAAGGAGAGTAATGCAGAATTCTAAACTCTCTGCCGAGATGTATGTACACCGTAGCCCTAAAGCCCCCTATTCAAAACCCCTTACACCGTCGCATCCTGACCAGTCATTTTCCTAACAATCAGCTGAATACCCAACAAAAACAAACCAACGGCAGTCAAACCAAACACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAACCAACCACTTCCCCTCACGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //