Array 1 3821429-3819688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051338.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM 33836 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3821428 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 3821367 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 3821306 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 3821245 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 3821184 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 3821123 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 3821062 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 3821001 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 3820940 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 3820879 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 3820818 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 3820756 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 3820695 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 3820634 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 3820572 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 3820511 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 3820450 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 3820389 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 3820328 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 3820267 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 3820206 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 3820145 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 3820084 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 3820023 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 3819962 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 3819901 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 3819840 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 3819778 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3819717 29 96.6 0 A............................ | A [3819690] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3831170-3830163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051338.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM 33836 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3831169 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 3831108 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 3831047 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 3830986 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 3830924 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 3830862 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 3830801 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 3830740 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 3830679 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 3830618 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 3830557 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 3830496 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 3830434 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 3830373 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 3830312 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 3830251 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 3830190 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //