Array 1 1056-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYY01000038.1 Neisseria meningitidis strain MRSN431273 MRSN431273_contig00038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1055 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 989 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 923 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 857 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 791 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 725 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 659 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 593 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 527 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 461 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 395 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 329 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 263 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 197 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 131 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 65 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : TCATCAAATCATCCGCCGCGATTCGATCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 28096-27532 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVYY01000037.1 Neisseria meningitidis strain MRSN431273 MRSN431273_contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28095 36 100.0 30 .................................... TGCGGAAAGCCTCCATGCTTTGCAGCACTG 28029 36 100.0 30 .................................... AATTTGCGCCTTGCTGCATTGTGTAGTTTG 27963 36 100.0 30 .................................... TTCTTCCCGATTGAGGTTGCTAGTTTTGTC 27897 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 27831 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 27765 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 27699 36 100.0 30 .................................... TGAATCGATATCGAGCCTGCCGGCGGGGGC 27633 36 100.0 30 .................................... AAACCGAGTTCAACCGCCACGTCGAAGACA 27567 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCAAGATATATCAAAATTGTAGATGAAA # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //