Array 1 1212-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYU010000001.1 Acidithiobacillus sp. VAN18-2 Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1211 28 100.0 33 ............................ TAAGGACTAGCAATATATAAAGGGTTAGCTTCA 1150 28 100.0 33 ............................ CTATACGATTCCCATAGGCGACCATCCGGCGTT 1089 28 100.0 33 ............................ CACCCAGAGGGCGATTCAGGAATCGCTGGAAGC 1028 28 100.0 33 ............................ TCAGTATCGCCGTATAGGACGTTAGCAGGGCCT 967 28 100.0 33 ............................ TGATTTTGTTGATTCGTGCGAGCAAATACGAAA 906 28 100.0 33 ............................ TAAAGGATCGTGTTAAAACATCCCCTTCTAAGT 845 28 100.0 33 ............................ CATCAATGCGTACTACTCCGTCCATATCAAAAC 784 28 100.0 33 ............................ CGAGGCCCGTGGATGGCTCAGTCCATGCAGTAC 723 28 100.0 33 ............................ TCTATACGCGGCTGGGCAGGCCGCAGTAAACCG 662 28 100.0 33 ............................ TAAAACCACCGCCCGGGCCGTATGTATTTATTG 601 28 100.0 33 ............................ CGAAGCAGGGACCTTGTTATATGGCCGGAATTT 540 28 100.0 33 ............................ TGAATCTGCCCTTGGTGGTAATCGGCGCTTTCA 479 28 100.0 33 ............................ TGGGGTCGCAAGTGTGTTTATTGCGATGCGGAG 418 28 100.0 33 ............................ TGATGGAAAAGGTGGGCGGATTAACGGCAGGAA 357 28 100.0 33 ............................ TTGGAAAAGCAATGGGCCACATTCCGCGCATTA 296 28 100.0 33 ............................ TGCGCTATGAGCCGGGCTGGCATACGCGCAACA 235 28 100.0 32 ............................ GCCGCGCATATCTCATATGCTATGGAGGACGC 175 28 100.0 33 ............................ CGGTTCTCAGGTGACAAGCGATAACCTCGCCGT 114 28 100.0 33 ............................ TTTCAAAGTCCCCGCTGGTTACCGCTGGACCGC 53 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : CCGTGGCGTTGCCATCGGTCGCAAAAACTTCCTCTTTGCTGGAAATGATGCCGGCGGAGAACGGGCAGCGTCCTTCTACACCCTGATCGAGACATGCAAACTCAACGGCGTAGAGCCCTTCGCCTACCTCTGCGACGTGCTCGAAAAACTGCCCACCTGGCCCAACAGGCGGCTGCATGAACTCTTACCCTACCACTGGGGAAAACAACCCATCGTAACGTAATACCTAGCCTTGGGTAGGTGGGTTGCTTATACGCTTACGAACTATCGACG # Right flank : CTTGCTTACGGGGTGTATATTAACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYU010000087.1 Acidithiobacillus sp. VAN18-2 Contig87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32 28 100.0 33 ............................ TTGCTTACGGGGTGTATATTAACGGGGTGGAAG 93 28 100.0 33 ............................ TCAGACCGCGAATCTAGCGGCGGCCATAGCCGC 154 28 100.0 33 ............................ TGGCTCCAGACGCTGGATTTATTGCGTACGGAT 215 28 100.0 33 ............................ TGTTCAGATTAGTCCAAACCTTGCGGCCAGTGT 276 28 100.0 33 ............................ TGGATAGGCGTCTAGGAATGAGGCCATCATTAG 337 28 100.0 33 ............................ TGGGTGGGAACCACTTGAGGGGGTTGCCTGTAG 398 28 100.0 33 ............................ TAAGATCATCCAGCCGCTTCTCAAACTCCTTCA 459 28 100.0 33 ............................ CGCGGGTAAGTTTTGCGGCTGGCTTGGCTGATG 520 28 100.0 33 ............................ TCTTTGCCGATACAACTTTGATCTCCGGTTCCA 581 28 100.0 33 ............................ TAGATAGGCTCATTGTAAATAGCTCCCCACGGC 642 28 100.0 33 ............................ CGATCTTTGTTGCAAGTCGCAAAAGACCCCGAG 703 28 100.0 33 ............................ TCTGCTGCAATTGGTGTTGGTACTGCTCTTGTG 764 28 100.0 33 ............................ TGAAGCAGCTTAAATATTTGGTCATGTTAGACG 825 28 92.9 0 ..........................CG | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TCAAAGTCCCCGCTGGTTACCGCTGGACCGCG # Right flank : GTAACAGATTATGCGTATTCCGGTCGCATCCGGCCACTGATTCCACGATGATCCGGCCACCGATTCCATGAACATTCGGCCACTCGTTCCACGGGCATCCGGCCACTGATTCCACGGCCATTCGGCCACCCCTGGGGCAGGAGCTACGTTGGGTAGTTTTGTTCATCATGACCTCTTTTGCGGAGCAGGGAGGTTTTTGTGGAGCGACTATCCATGCGCAAGATTCGAGAAGTATTGCGATTGAAGTACGAGGCGGGACTGTCCGCCAGAGCGATCGCCCGCAGCGTCAACGCCGGCAGGACAACGGTGCAGGAGTACCTTCAGCGTTTTGCGGCGAGCGGTATTCCCTGGCCCACGGAGCTGGATGATGCTGCTTTGGAAAGCCGATTGTTCCCTCCGCCACCACCGGCTGGCACGGAGCGACCAGAACCGGACTGGACGGTTGTCCAACGCGAGCTGCGGCGCAAGGGGGTCACCCTGTTGCTCCTCTGGGGGGATGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3362-3572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYU010000087.1 Acidithiobacillus sp. VAN18-2 Contig87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3362 28 100.0 33 ............................ TATTACCGCCTTGTTGAAGACCTCGCATGGTCA 3423 28 100.0 33 ............................ TAACCGGAGATAGCAGCACCGATAAAAAAAACA 3484 28 100.0 33 ............................ CGAACTACGGCATTACCCAGTCCACCTACGACC 3545 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TCCGATCTCGAAATCGCCCATGCGGACGGCCGCTATCCCAAGCTCCTTCAACGCTTGTCCAAGATCGACCTGCTCATCCTCGACGACTGGGGGCTGGAAATCCTGACCGATCGGAGTCGGCATGACCTCCTGGAGATCCTGGATGACCGCTACCAAACCGGTTCTACCCTGGTCACCAGTCAATTACCCGTCGAGCACTGGCATGACAGCATTGGCGATCCCACCTTGGCGGACGCCATTCTGGACCGCCTGATCCACAATGCCTACAGACTGACTATCGACGGAGAATCCATGCGGAAGAAGCAGCGGTTGACCCCAACGGCGCAGTCGGCGTAACGTCCTTTTACCCGCGTCGCTACGCTCCGCCTGCCCCGGCCGAATGGCCGGGGACAGGGTGGCCGGATCATCGTGGAATCAGTGGTCGGATGCCGATGAATTGAGTGGCCGAATGGCATGGAATACGCATCCAGCGTAGCGTAAACTGTCGCGCCGCTTGTTGT # Right flank : T # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 92962-94574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYU010000130.1 Acidithiobacillus sp. VAN18-2 Contig130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 92962 28 100.0 33 ............................ TATTTAATGCTTGCATTTAGTATGACCGTGATA 93023 28 100.0 33 ............................ TGACAAATCCTACAAAGAGCTATCACAAAAAGG 93084 28 100.0 33 ............................ CGGTCGGGGGTGGCCATCGAGTACCGCCAGCGC 93145 28 100.0 33 ............................ TAGCTTTCCGCTAGTCTCGTGCGCTAAAGTTTT 93206 28 100.0 33 ............................ CAATCCGGCCCTGGGAAGATTCATCTTGGATAC 93267 28 100.0 33 ............................ CGGGAGCAATCTGATGAGTGATCTTAAAGATGC 93328 28 100.0 33 ............................ TAAAGCCCATGCCCGCGCGGCCGACATGGATGC 93389 28 100.0 33 ............................ TTGACGCAGCGCTGCGCCCCGGCGATCACCGAC 93450 28 100.0 33 ............................ TCGTTTGACCAGGAAATCTATATCCGGCGCGTG 93511 28 100.0 33 ............................ CGCATTACTGACTCTCGGCGGGATTACCCGCGA 93572 28 100.0 33 ............................ TGCCCATCAATCTGCACATTAAACGCGGCGACC 93633 28 100.0 33 ............................ CAACGTGCGTATTCAGGCTTCCGGCGTTCAATT 93694 28 100.0 33 ............................ TGTATCTCTGGGACCTGCTTTCACGCACAACGC 93755 28 100.0 33 ............................ TTGATAGGCTCATTGTAGATAGCTCCCCACGGC 93816 28 100.0 33 ............................ TGAATTGATCCGTGCTCACATTATACTGGCTGA 93877 28 100.0 33 ............................ TACCACTCGACCGCGTCGTTGATCACTTTGCGG 93938 28 100.0 33 ............................ TCAAACTCCAGCCAGCCGCACGTGGTTGGGTTT 93999 28 100.0 33 ............................ CGGGGGTTACTATACGATGGAGCGCCTGGAGGC 94060 28 100.0 32 ............................ GCTCGGAGAGATGTGGCAGCCGCCGCAGCAGC 94120 28 100.0 33 ............................ TGCATCAGCGCCGTGCGATGCCCAGTCATGGAG 94181 28 100.0 33 ............................ TCCGGCAGCGGTGATGGGATCACGCCATCGAGC 94242 28 100.0 33 ............................ TAAAAAGACGGCCCGGGAAACGGTCGCCAAATT 94303 28 100.0 33 ............................ CGTACCACTGACATTGACGATGGCTCGTGCCGA 94364 28 100.0 33 ............................ TCCATAGGGACGCCAGCCTATTGCATCGGCGAT 94425 28 100.0 33 ............................ CACAACGCGCCTTTGCTCTTTAGTGCCGAATTT 94486 28 100.0 33 ............................ AGACGCAAGGACCGGCTGATGCTTGATAACCCA 94547 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : CTACAAGGCTGATCTGTGCATTGATTTAGCCTTTCATCTCACCCGCGAATTGGCGGGTCGGTATGACAAACACAAAGTGGCCGCCGCATTTCGCCAGCGCGTGATTGAACTAGATTTGCTAGCCAAATTGGGCGAAGACATTGCCACAATGCTTGGAGGTGCTCATGCTCGTCGTCCTCGCCAATGATCTACCCCCGGCCGTGCGCGGTCGCATGAAGCTGTGGTTCGTTGAACCACGGCCCAATGTGTTCGTCTCGGGCGTGAAAGACTCGGTGGCCGTAACCGTGGTCGACTATCTCTATAAGCATTGCCAGCCCGAATCTGGCCTGCTGATCGTGCGCACGATCAAGCAGACACCTGGCTTCGAGATGCGCTGCATCGGCCCGCCACGCAAGCCGATGATCGAGGTGTCGGGTCTGCAACTGATTGTGGAAACCCTGAAACTCTAGCTAACCAGCATATCTTGTGCTGGTGCTCGTTAAGGGTACTAATATGTTGGT # Right flank : GCTAGACGGTATGCCATACTGTGCCGCGTATTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-455 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYU010000136.1 Acidithiobacillus sp. VAN18-2 Contig136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 33 ............................ TAGTCGCGCCCTTTCTTTGTCTATGGTACAACC 62 28 100.0 33 ............................ CATTGCGTCCTACCAAGGCAAACCACGCCGTAC 123 28 100.0 33 ............................ TTGACGCGGGCATGTCTCGAATGTGCTGATGGC 184 28 100.0 33 ............................ TCCGCGCTAGCCCCGCCACTGGTCGGGTACAGA 245 28 100.0 33 ............................ CCGTTATGGCATCATTCCCGGCTGTGCCTTGTG 306 28 100.0 33 ............................ TAACGGCGACGGGGCAGAACGCGGTACAGAATC 367 28 100.0 33 ............................ TGGGAATGAGTAGCCCGATTTTTACTCAGCCAA 428 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : | # Right flank : CCGTAATCATGACGGCCAAGATGGAGCGTATTAAGTCTTCCCCGTATCAGCGGCCACCACTATGGCGCCATTTCAGGGTCGGCATAATGGCGCCACCCGCACTGCCTGAATCAGGGTCTCGAACATCCATTGGATCGGTTACCGTCCTCAGCTTTCGAGGATGTGACCATGAGCAACAGGAGGTTCGAGATGTTTACCATTCGTCAGATATTGGTACGGATGCGCCAGGGGGACACTGACCGGGAGATTGCCCGGTCTGGCCTCATGGGCCGCAAGAAGCTGGGTGCTCTGCGTCGTGACGTTGCCCAGCGGGGTTGGCTCGATGCCCATCAGCCACTGCCAGAAGATTCGGAGCTGGCGGCCGCGCTGCAGCATCAGGCACAGCCTGCGTCAACGCAGCGTGAGTCTTCCTTGAAGCCCTTTGAAGCCCAGATCACTCGGTGGGCGGCGGAAGGCATCCAGGGCACCACCATTCACGCCGCATTGGTCCGCAATCATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //