Array 1 927514-927679 **** Predicted by CRISPRDetect 2.4 *** >NZ_UICQ01000002.1 Clostridium neonatale strain C25, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 927514 30 100.0 41 .............................. ATAAAACAAATATAATTGCAGCATCAAATACAATGCGCATC 927585 30 100.0 35 .............................. TTCTACTAAAACTAAGTAGAGTCGCTTCTATATAT 927650 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 3 30 100.0 38 ATTTAAATACATCTCATGTTAATCTTAATC # Left flank : CATATATAATCATTTGTCCATTATTATTTGCTATGGCAATTCTTTCATTAACCTTATCTATAAGTGTATTAGGATAGTAATTATGTCTGCTTTCTTCTCCAATATAATCCTTCTGCATATCTATAACAATCAACGCAATTTTATTTAGCATGGCCAGTTTTTCCTTTCTGTTAATAGGTTTAAAATTTGATTTTATCAAGAATATTATGCTCTTTATCTCTGCTTATTTATTACCATTTTTCATACTTTATAATTTCATCTAATGTCAATTTTAATTGTTTGTGATGATAAAGATATGAAATCTAATGGATTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAAATACATCTCATGTTAATCTTAATCGAGTTTTATTAGTTTAGCCTTAGAAAATGTATACAG # Right flank : CCAACGCGATTTAGGCATTCTTAAACTTCAAAAATTCCTCTATACTAGTAATAATACCACATCACAAAAAATTTACCAATGAATGAAGTTTTTCTGATAAAAATATGTTAAAACTATCAAATATCCCATCATTTCTAGCTTTAACAAAGATAGCTGAAATTTCTACCTGGTAAATTTATATTATTAAATCTTCTCCTGTATTATTGGCTGAACATCCAAGTACTTCTTCACCAAATACATTATCATTCATAAGCTTTATAATACAAATAAAATCTTCATTTTTATCTATTACTTTATTTAATTCTGTTTTGAATCTAATTAATTTTGACGGCGACATTTCTCCCCTAAAGACTGATTTTTGAAAATGTGATAAGTATTTCTTACAAACCTTAAACACTCTTTGAACTCTTTTTTCATTAACATCATAAAATACAAATGCATAATTATAGTTCATTACTTTTCCCACTACATCCCCTCCTTTAAACTGAAGGGAACAAATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATCTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 955138-955496 **** Predicted by CRISPRDetect 2.4 *** >NZ_UICQ01000002.1 Clostridium neonatale strain C25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 955138 30 100.0 36 .............................. TTGGAGAACAGCGTTAAATTTAACGCAAGATGAAGT 955204 30 100.0 34 .............................. CCATCCAATTTGATGTAGCTCCTGCTAATATTTG 955268 30 100.0 36 .............................. GAGTTTTATTAGTTTAGCCTTAGAAAATGGATATTC 955334 30 100.0 37 .............................. ATACGAGAAGTAGAAAAAAATGAAGTGGTTCTTGACT 955401 30 100.0 36 .............................. AATTAAAAAAAGACGTGAAGAATTAAACTTGTCTTA 955467 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 ATTTAAATACATCTCATGTTAATCTTAATC # Left flank : TACGCTTTGAATAATATTCAGGTATCTTATACGAATTGTGACACTCAATAACATTTTTAATTAACTCATCTTCACTTGTATCTTCAATGAATTCTCTTATTTTACCCTCTTCAAATAAAATCTCTACCCCAAGCCTAGCATGATCAATTGACTTAGAATCATTAAATGTTCCATATCTTCTTACCTGTTCAAATCTTCCTATATCATGTAACAGTCCAGTAAACCATGCAATATCAATTTCTTCATTTGTCATCTCTAAGCTTGGTGCTATTTTTTCACATAGTTCACTTACACGATATGTATGATCTATTTTTAATTTTATTTTTTCATTGCTGGTATCATACTTCTCAACATAATCATTAAATACTTTTTTAGATTTAATTTTGTCTATATACATCTTGCAGACTCCTTTATTTTTATAAAAAATCCTTTTGTATTATAAAACCATTAGTTTTATATTTTTAATATTTTACATAATAATTAGAAAGCTATTTAATCAT # Right flank : CCTTAGAAAAATAGCCATTCTAAAAATAAAAGAATTCTTCTATCCAAGAAATAACGCTATTCTTCAAAAAATTTACCAAGTGTTTTCTATTTTTTCATTTTTATTATAATGAACTCAGATAAAGTCACTATTGTTGCAGTGTTTTACCTAATTATAAATTAAAATCGCTTGGTAAATACAATGTATACTTTAATAAAACATCAATGATTATTTCACAAGCTTTTATTTTTATGGGCAATGTTTTGCTTCACATGCTTTATATCCTGCTGCTTGTGCTTTTGATCTGCTCATAGCTGTTGAATTTTTCATTCCATGAGCATTTGCTGTATTATGATATATTCCTTTGCTAGATACATAAACTGTATCTGATGCATTCTTTACAACTACACTTGAAACATCATTATTATCAATAGTTGAGGGTGTATTTACACTAGTATTTTGTATTTGAGCTGGAACACTTGTTGTCCATGCACCATTACTATTTAAATAATATCCTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTAATCTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 1559770-1559477 **** Predicted by CRISPRDetect 2.4 *** >NZ_UICQ01000001.1 Clostridium neonatale strain C25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1559769 30 100.0 35 .............................. TTCTTTGGAATCTATTTTCTCCCTTTTCCATTGTT 1559704 30 100.0 36 .............................. ATATATAATACAATTGCCTATTTAATTTTAGGTACT 1559638 30 100.0 36 .............................. AAATGCTGAAGAAGTCTCTTTATTAAAAGAATATGC 1559572 30 100.0 36 .............................. TGTGTATATCCCTTATCTATTGGATTATTAGTAGTA 1559506 30 70.0 0 ......T.....T..A..TA.A..AA...C | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 94.0 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : TTTAGATCTGATAAATTTATTTGCGCCAAAAATGCCATTGCTTTTCCCTCATTATCCAAAGGATAATCTTCAATACATTCTAAATATGGACATCCTCCCAATTTACTATCCCAAGGTTTAGTCTCTTCAATTTTAAATGTTATTTCATTACTATACCTAGTATTCTCCATGATAATAGCTTCATGCTCTTTTAAAATCTCAGGAATCTCATATTTAATCATCCCATCAACCCTCCAAATGAATATTTATTTCTATGCTAATTATAACATATCTTGTAAATAAAACATTATCCATAATCTAAATAGACCTGCTCATTTCATTAATTATTTACCAGGCCATTTATTTACTTTTCGGTTTAAATTAGAGTGACAAAGCCACTTTAAGCACTTTCCTCTATTGCTTGCATCAATATATAATTTCGTTGGTAAATTTTTAAAGAATATGCTACTATAGTCATATACAGAGAATTGCTGAATTTAAAAATGGCTTATTTGCGTTGG # Right flank : TTTAGTTAAGTCACCCAAAGTTTTTATTCTACTTATATCCAGGTAAATACGTAATATTTTTGCCACTATCCTCAGATATAGTTAATTTAGACAATTACCAAGTAAAAACACCTAAAAACTAAATAAAACAATAATTAGATAAATCTAGTAATTTTACTTGATTGTATTTCTACAGACTCATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGCACTGAATTTTATTAAATAATTAATTCCCCAAAAGATTAATATAAAAAACAATAGACATAAACTTGAATTATATTTATCCCAAAAATAAATTACTATAGATACAAGTATAGCATTTAAGCAACTAAAGAATAATTGCATTTTAAAAAATTTATCATTAACTATAATAAAATTCTTATCCTTTATTGTGTAAATAACTTTTTTATTAAAATAGTAAATAATATTATAAATAACAAATAATATTGGCATAATTACACCACATATAATAAATAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //