Array 1 2077-2610 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889771.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 2077 35 100.0 38 ................................... CGCAACTCCTGCAGCAAGTGCAGGAAACGAGAAGAAGA 2150 35 100.0 35 ................................... TTTTTTTCCACCCTTGTCCCAGTTGATCAGGATTT 2220 35 100.0 36 ................................... CTGGACTTTCAAGGTCCCAACCAACGGTCCTCCGGG 2291 35 100.0 36 ................................... TTTAATGTCTCGCTCTTCAGCATTTTTTTGCTGTTG 2362 35 100.0 37 ................................... AAAAATTTCGTCAACTTCGGTTCCGCTTTCTTGAAAA 2434 35 100.0 39 ................................... TCTCCATCTCCCCGTTCTATCTTTTTCTTTCTCCGGTGG 2508 35 100.0 33 ................................... AAAAAGTGTATCGTTTCCTGCTCCGCCAGAAAG 2576 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================= ================== 8 35 100.0 36 CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Left flank : TCATATCACCAGACTGAGCTTGATTAATCGCGTCTCGTAATGAGCCTGCTCCCGAATCTTGATTATTAATAACGAACCGTTCAGCCATGCTTAATTTTCCTTTATGATAGAGAAATTAATGTTTGAAATTGTATTAATTTCTTCTCTATTGCTCCAAGCCATCAGGAAAAACTCTTATCTTTTTTTATTGCTATACTAGAGAGTCTATTTGTCGTGAAAAATCGCAGTATTTATTAAATATTTATTGCATATTTATTTGGGAAAAATTAAAGATACAATTTTGCTAATACCAGGAGGGGGTTAAGTTTCTGAGGGGGTCTGGGAATTGCTGAAATACCCATTCTTGGGTTGACCCCCTCAGATCGCCCTCTCTGTCTGGGTTTCAAGCATCGTTTATTGTTGTTTATTGAGAATAAGTAGCATTTATTGAAGGCGAAACTTGACGCCCTCAGATTTGGGGGTTTATAATCCAGTCAGAGTAAGGCTTCTACAAGCCTAGA # Right flank : CTAATCACGATTCAAAAACTCTACTATTCCAAGAAATAGACTTTAGACTAAGGAATGAAAAATCAATAAATGGATTAATGAGTGAGTTGAGGTACGGCTCGATAGTTCCATTTGGGTAAATATTCATCAAAAACAATTTTCAGAGTTTTTTTGAAATGATCAGTTACCTTCCGACCCGTTTGATAGACCTGATCAACGACATTAACAACGACAGATAGCCCTGTATTAGTACGAGTTTTTTCCATGAGAGTTTTGACCAAACCAAGACTGGTAAAAATCACTCCTTGACAAGCTCGAGTTAGATGAGGAAAAAGTCGATGTTCAATGGGATTATATTTAGATGTATAGGGAGGGTAATGAGCAATTCTGATCTCAATTCCAATTTCATCCACTAACTTTTGTAAATCTTGTTTAAAAATATAATGATTAGCATTATTACTGCCACCCCCATCACACTTAGCTAAAATCGAATTGGCATGAGGATAGAGAGCTTTTCCATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 204311-205591 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889796.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 204311 37 100.0 41 ..................................... TCTGCTGATGCCAAATGTTCACCAAGCTGTAATTCAAAAGA 204389 37 100.0 32 ..................................... AATAACAAAATTAATGTTTCCCCTGATTACAG 204458 37 100.0 35 ..................................... CAGGCAGTTAACGTGCATATTAAAATCGGAATGCC 204530 37 100.0 37 ..................................... TTGTGATTCACGCTTTTCCATAGGGGCATCTATTATA 204604 37 100.0 40 ..................................... CCCGCTTATCTTCTGGGAGTGCTTTTGCCATTTCCCAGTT 204681 37 100.0 41 ..................................... GATTGGTATCTACTGACTCTGATAGTTGATAAACCTTATTA 204759 37 100.0 34 ..................................... GGGATAAACAATTTTATTCAAACCACCAACCCAG 204830 37 100.0 35 ..................................... AAGTTAATGATTCGATCTATCTAGTTGAATAGGAG 204902 37 100.0 38 ..................................... TCAGCACTAAAAGAAGAATTCGATGTTTTAAACGATTT 204977 37 100.0 35 ..................................... CACACCACAGTAGACACTACAGAATTAGAGGCAAG 205049 37 100.0 33 ..................................... AGCTACGGTTTCCGAGTCAATTCTCAGAACTCG 205119 37 100.0 35 ..................................... TATTTGATATTGCTTAATTGCTATCACCAAACCGA 205191 37 100.0 36 ..................................... CCTTCATTCGTTCCGGTCTTTTTGTCAATATTTGAT 205264 37 100.0 32 ..................................... TGTCCCCATCGCATTTTTCTTTTTTGTTTGCG 205333 37 100.0 40 ..................................... CATTGGCGTTCATGTAAAAACACGATACCTCCAGCAGAAT 205410 37 100.0 36 ..................................... AAAATATCCATATTATCTAGATCAGAATTTAGTTGT 205483 37 100.0 35 ..................................... TATTCGATGTTTGACCCACGCCAAGCCATCGAAAG 205555 37 97.3 0 ..........C.......................... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 99.8 36 GTTGAAATCAGCTATAATCCCTATCAGGGATTGAAAC # Left flank : ATTTCTGAGGATAAACGCCGCACTAAGATTCATTCGATCTTGAAATCCTATGGTCAATGGATGCAATATAGTGTTTTTGAGTGTGAGTTGACTAACACGCAATATGCTAAATTGCGATCGCGTCTCAACAAAATTATTAACCCTGAAACCGATAGTATTCGCTTTTATTTCCTTTGTGCTTGTTGTCAGGGTAAGGTTGAACGTATCGGCGGCGAACAGCTACGGGATGATACGATTTTCTTTGCTGAGTTGCGCTAACCTGTGGCTGTTGGGAAAAGGAAGGGTAAAATTATCGCTGAAACCTTTATCTGTTCTGGTTTTGAACTCGGTTGGTTGTCTTGGGAGGTTGGCGCAATTTTTGGAAGCTATACCAATCAAAGGTTTCAGCATTTTTTTATTTTTGCCTCTTGCTAAGTCGATGGCTGAAATGGTATATTCTGATCAGGTTAGCGCGATCGCACCTCGAAAACTAAATACACTAAGGGTTTCAGAAGCCTGCG # Right flank : CGGTATAATTGAAAAATCCCTAAAACCTTAATTGTCAAAGCGTTACTGATGAAGAAATTGTAATTGTTTCCTGTAAATTTCACTACTGAGCCCCTCCTTTTGGACTCAGTAGCTTAACTAGGGTTTATTTGTCGGTTTTGGGTTTGTAAGTTGAAGCAACGTAGAGTTCCTTTAACTGTTTTTGGTCTACGCCAGAGGGTGCATTTGTTAATAAACAACCCGCTTGTTGAGTCTTCGGAAAAGCGATCACATCTCGAATTGATTCCTCTCCCGATAATAACATCACTAATCGATCTAAACCGTAAGCAATACCGCCGTGAGGAGGAGTTCCGTATTCAAAAGCTTCTAATAAAAAGCCGAATTTATTGTAAGCTTCCTCCATTGTTAATCCAATGGTTGAAAATACCTTTTCTTGAATCTCTCGTTTATAAATCCGTAGACTACCACCGCCGATTTCATAGCCATTTAAGACTAAATCATAAGCTTGCGCTCTGGCGTGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAGCTATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 333231-334875 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889796.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 333231 37 100.0 34 ..................................... TAATGCTGACTCTTACGACGAAGACAGCTATCAA 333302 37 100.0 34 ..................................... TCTTGACTGCCGATGTGGCATCTGGGTAAAATTT 333373 37 100.0 37 ..................................... TTATCAGCCCGTGATCATACTGTTCGAACAGGTGAGC 333447 37 100.0 35 ..................................... ATTGCCCGATTATCATCACTCTGAATCTGCCCAAC 333519 37 100.0 41 ..................................... AGGGACTTAGGATTTCTGAGTCGGCGCGGCTTAATTAGCAA 333597 37 100.0 36 ..................................... AGCATCTCTGCTTTAGTGACTCCCCGGTGTGCGAGG 333670 37 100.0 36 ..................................... AGACATTAACAACTTTTGGGGATTAATAGAGGAGAC 333743 37 100.0 46 ..................................... ACACTTTATCTGAAGGCGTAAACCTTCCCTGCCCTTGTAAGATTGA 333826 37 100.0 36 ..................................... ACACTTTATCCTTGCCTTCTAGCAGGTAGTGTCCCG 333899 37 100.0 36 ..................................... ACTAAACACTTGAGAAGAAGCAGCTTTTTCCCTGGA 333972 37 100.0 37 ..................................... ATGACTTATCAATTGGAATTCAGTCAACTATCCCTTT 334046 37 100.0 36 ..................................... ATGTCAGCTTGTCAGAGAGATGAAAGGGGTATTTAG 334119 37 100.0 34 ..................................... AATAAATTATCTAAATCTGAAGAGAAACTCTTGT 334190 37 97.3 36 T.................................... ACCAGATGCTTGTACCTCTTAAAAGACTATTTTGAG 334263 37 100.0 34 ..................................... CTTTAGTTAGGGTGCGTGTTTTCTGGGTTTCGGA 334334 37 97.3 35 C.................................... CTTTTAAACACGTGCAAAGTGGTACAAGTTTGCAA 334406 37 97.3 35 A.................................... CGTAGAATTGTTGATAACACAGGAGGCTCCTTTGC 334478 37 100.0 40 ..................................... CTGCTAAAGGGATTTTAAAATTTGCTGAACAATTATCAGG 334555 37 100.0 35 ..................................... CAAGATCAACCTGATGAAGATGATGAAGATGAAGA 334627 37 97.3 32 T.................................... CTCTGGGGTGACAAACCTAATATTTCGGAGAT 334696 37 100.0 33 ..................................... CTTTATTAGCTAGGTATTCAACTCTTTGTTTAA 334766 37 97.3 36 T.................................... CACCAAGTTGTAGTCCTAAAAATATCGAATTAGGTG 334839 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 23 37 99.4 36 GGTTATAATAACCACTAATCCCTTTCAGGGATTGAAA # Left flank : CAGGGTAGGCGTTTTCCAGGTTTGGGGTTCATAATAAGCAAATACAAGCAACACAAAAACTATCGTTTCTGGAGACTTAGTAAAAATGAATACAGACGTAACCTACGGATTATTACTGGCTCTGATTAATGGCATGATTTGTCTGTTCTTACCTGCAATTGTGTCTTATCTCCAACGTCAACGCCAGAATAATGATCAGTCATCTGTCATGACTCAGCAGCAAAACTAATGAATTTTGACTACTCTAAGTTGCGACAACCTATCGCTGTTCAAAACTCATGGGGAAATTTCAGGGCTGAAACTGTTGTCTGTTGAGGGTTTGAACTCTGTTGGTTATCTTTTGAGGTTGGCGCAACTTTTGAAAGCAATACTATATAAGGCTTTCATCGTTTTTTGGTTTTTCCTTATTGTCAAGTCGATGGCTGAAATGGTATATTCAGATCAAGTTGGCGCGATCGCACCTCGAAAACTATATAAATTAACGGTTTCAGGAGCCTGCG # Right flank : ACCTAGAATAAATAAGTCCTCAGCATTATTTATTGTAAGCAATTTTGTTCCTAGAAGGTTGATCTGCTTCCGGGTCTGCCTCTTGGCCAAAATCGAACCGCAAAGGAAACTAACGCCATTGCTTGGTTAAGTTGTTGCAGTTGTCGTTGAAGTTGCTTATAATTTTGCCTGAGTTGAACACTTCCCTGTTGTCCATAATCAATAAAATTCGGTGCTCTTTCTAAAACAAATCGGGTGTTACGCTCCATTAAAATTAACCGTTTATCTAAACGATTAATCATTAAAGTAAAGAGCCAGATTTTTCGAGCGATATACAAACAGACTAAAGAAATTAAAATATTGATGATAATAACGGTAATCAGCATTCTGATACTTTGATCCTAATCAAGGATTGTATGATCTGATTCTATCCTACTAACACCCCCTCGAATTAGAAATATTATGTTCAATTTATAAATATTTGAAACAATTTAAAAGCCAGTTGTCAGCTAGAAATAAAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTATAATAACCACTAATCCCTTTCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 228955-229650 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889802.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 228955 37 100.0 41 ..................................... CTCAAATTAATTCAATATCCGACACCAGGATTGGGGGTAAA 229033 37 100.0 36 ..................................... TTAATTTTGAGATTTAATTAATATGTTGATCATAAT 229106 37 100.0 35 ..................................... GATGATTTCCTCTCGGTTGTCCAATACGCGGCGGA 229178 37 100.0 35 ..................................... ATAAGTCTTAATGTGGGTTTGAATGCCTACCTCAA 229250 37 100.0 35 ..................................... AGTATTTAACATTAAAAGCGATTTCCTTTGGTTCA 229322 37 100.0 36 ..................................... CTGGAAATACTGCACTAATCTTTATCTTGATTATCG 229395 37 100.0 37 ..................................... TTCTTTACCAAAGTAATGAAGGTTCAGTTTTCCGGTA 229469 37 100.0 34 ..................................... TTTTCAATGTAATTAACTAAAGTATTCAATTGAA 229540 37 100.0 37 ..................................... ACCTATGGACTAATAAGCAGCAATCTAAACCTGAATC 229614 37 89.2 0 ...............................G..TTT | ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 98.9 36 GTTATAATAGCCATTAATCCCTTTCAGGGATTGAAAC # Left flank : TAGTTCTCAAAATCCCCTCCTATATAATAACAGATTTGATTGTTTATCTGGACTATTTCACGATGGCTTAATTTTTGGAAACCATACTAATATTATATGTTGTCTTTCCTAAACCCTTTCTTGGGGGATAACCGTACTGTTTAAACGCTGTTGACAAGTGATTATGGTTTGCTATAACGAGATAGAATCGGGAAATTTGCGATCGCTATTGAAAACAAACTTAATTTGATCAATCTTTTGGCTTCTACTAGCGACAACTGATAGGTGTTGGGAACAAGGAAGGTAAAATTTAGGGCTGAAATCTTTGTCTATTCTGGGTTTGAAGCCTATCTACTTGATTAAGGGGTTGGCGCAAGTTCTGAAAGTCTTATGGGAAAGGGATTTTAGGATATTTTTCTTTTTACCCCTTGTTACGTCAATGGCTGAAATGGTATATTTAGATCACGTTGGCGCAATCGAACCTCGAAAACTTCATAAATTAAGGGTTTCAAAAGCCTGCG # Right flank : TCACCGCCCGGACTCAGTTATCAGTCAATAGGGAATCTTGAAATAGGGAATAGGGAATGGGGAATGGGGAATGGGGAATGGGGAATGGGGAATGGGGAATGGGGAATGGGGAAGAGCCAACATCCCTCTTTTCCACTGATCTGTTTAAGAATGTTGTGAATCATTTAATATAGTGAAATCCTGTAATAATTTATGTTTAGTTTAATGATTCATCAACAGCATTTTTCCAGATTGTTATTGAGTTTCTTGATAACTTTTTCCTTGAATCCTTTCCTGTTAGCGTCTGTCGCTCGTTCTCAAACTTTAGCTTATTGTAAATTATCTCCGCAAGCGATCGCTCAAAAAGAAAGTTTACGACAAACCGCATTAACCGGAGATGCCCAGGGTATTCAAAACTATAATACCATTTTAATTCAACACGCTCAACAAGTCAATCAATGTCGTCAACGAATTAACCCCAAAACTCAAGCGATATGGTTACGATTATATCCCTGTGATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAATAGCCATTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 425040-423721 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889782.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 425039 37 100.0 42 ..................................... ACAGCGACCGCGTGCAGGGTGGCGAAATTGGACGTATGACGA 424960 37 100.0 42 ..................................... TTACTTTCTTATTATTAATTTATATATTTCCAATTCTTTTCA 424881 37 100.0 36 ..................................... CTCTAGTGAATTGTTCAATGAGGTTCAATTAAGTAT 424808 37 100.0 36 ..................................... CTTTAGGAGTAGCAACACTAGGTGCAGCTTTGGTAG 424735 37 100.0 37 ..................................... CCTTAGTAGTAATTGAGTGTAGATTATAAGTAAAAGG 424661 37 100.0 36 ..................................... TAAGTCTCGTTTCCTTGCTAAATTAGCGTGGGAAAA 424588 37 100.0 43 ..................................... GACAGGAGCAAGCGGTGGTTACGGGGGGCCGTCAGTTCGTGAA 424508 37 100.0 38 ..................................... ACTTGTCACTGATAAATCCTAGGCTGACCCTTTGGTGT 424433 37 100.0 37 ..................................... CAACCGCATCTTGCGGTTTGTGGATGAAAAACCGAAG 424359 37 100.0 41 ..................................... AAGGACGATGCACTGAGTCATATCAAGGCTTACAAAGAGAT 424281 37 100.0 37 ..................................... CTATTGCTGTAGTGAACGCTCCTATAGCATTACCTAT 424207 37 100.0 37 ..................................... TCGCACCCAACCTTTTGCAGAAGCTCAAAAATTAGGT 424133 37 100.0 39 ..................................... GAAAGGGTTAAGACGGCTTTGGCTAACGATTATTTATAT 424057 37 100.0 40 ..................................... GAAAATTCTTGTAAATCAATTTCCGGTTCGCCGTCGGGGA 423980 37 100.0 38 ..................................... CGCTATGTTAAATTTGGAAAAACAAATCCACCAGAGTT 423905 37 100.0 38 ..................................... TCTTGATATATCCCGAATGAGTGGCAGGAAGATGAAAT 423830 37 100.0 36 ..................................... TAAGCAATGCCTAATCACCTGATGGGCTGCTTTGTT 423757 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 100.0 38 GTTTCAGTCCCGCAAGCGGGATTCTATTAGTTGAAAG # Left flank : CAACTGGAAATATAGTAATTTCGCCTCAATTTGATTTAAGTTGGCGGTTTTCTGAAGGTTTGGCGATGGTTTTAATTAAAAATAAAATGGGATATATTGATAAAAAGGGAAATATAGTAATTCCAGCCACATTTGATTATGGGTGGGATTTTTCCCAAGGGTTAGCAGTGGCCAGAAAAGGCAGAAAATGGGGTTATATTAATCATCAGGGAAGTTTTGAGATTGCTTTAGAATATGAAGAAACTGCTAATTTTTCCGAAGGGTTAGCAGCCGTAAAAATTAAACAAAAATGGGGTTATATTAATCAAAAAGCAGTGATGAAAATACCGCTTCAGTTTGATAGTGCCAATGAATTTAAGCAGGGATTAGCAGCCGTTAGAATTAAAGATGAATGGGGGTATATTAATTCAGTAGGTGCATGGGTTTGGCAACCTACAAAATGAATTTTTTGTTTTAGTTTAATTGTTTAAATAATTACCAATTAAAAATTAATAAATGAT # Right flank : ACTGTCCCCTGAAACTGGGATAGAGTAGGCATTCTGAAGCCACTTTTCGTGAACCTCATTTTTAGCCTGATTTCAGCCTTCATTATTGCAACCAATTCGCAATAATTAACCGAACTCAATAATAAAAACTATTGAATTGTCGAGGTTCTGGCGTTTTTCGTGAATCCCCCAGGTTTTCGCTCCCGCTTCGATTCACGAAAACTATAGTAAACCAAAGGCAACTGCTTGTCAAGATTAATCTTCTAGGGTCAATAATCCCGGTTTCTCAAATCCATAGCAAAAATTTGATAAAAACGTTATGGTGATTCTCTAAACCGCTTGGTTGATATCCAGAAATCCTTGAAAAGGAGAATAGTCTCATGTCAGATATTCTTAATACTCAGTCTCCCCATCATGTTGTTATTGTCGGAGGTGGATTTGGCGGACTCTATGCAGCGAAAACCCTGGGACGTTCTTCCGTTAAAGTCACGTTAATTGATAAACGGAATTTTCATCTATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCGGGATTCTATTAGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 540217-538656 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889782.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================================================================================================================================================= ================== 540216 37 73.0 33 .G.....C..CTTTTT..A.............T.... AATACTTCGAGGTGTGGGAGAAACAGCCTGAAC 540146 37 86.5 231 C.............TT..A.......C.......... AACCCTTAGCTGTTTTTGGGCGTTTATGCCAGAACCCTTATTCTGTATGAGTTCTGGCATTTATTTAAAAAATAGGTTGGCGCAATCTGTGTAAGGCTTAATCTGAAAGGGATTCAAGGATTTTTTTTTAATACAAATTTGACAAATAATGGGAAGATTTGCTATTATTAAATTAGATTGGCGGAATTGCACCTTGAAAATTAAATATCACAGGGGTTCCAGCAGCCTGCT 539878 37 100.0 35 ..................................... TAATGAATTTCTAGCAATCAGAATAGGACTAGCCG 539806 37 100.0 40 ..................................... AAAAATTCCCACTAGCAGGAGGGTATTCAATATTGGTTAA 539729 37 100.0 40 ..................................... TTTTCTTGTCTGAAGGCATAAATCCGATAAAATCCTTCAC 539652 37 100.0 38 ..................................... TTGACTCATAGGTTGCTCCAAAATGTTAATTAATCATT 539577 37 100.0 41 ..................................... TTGAAATACAGAAAGGACTAAACCCCTCGCGGTGGTGGAGT 539499 37 100.0 36 ..................................... AAAAAAACAAGAAAAAAAGGCAGAGGCAGCAAAACC 539426 37 100.0 36 ..................................... AAGGATCAACCATTCCAACAAACTATCAAACGAGGG 539353 37 100.0 34 ..................................... CCTATCTCACTCAATCAGATATAGACCGCCTTGA 539282 37 100.0 40 ..................................... ATGATATCTATCAAGCTCGTAAAGATTTAATTGCCTATGT 539205 37 100.0 39 ..................................... TTATTTTCTTGCTTTGATTTTAGCAACATCTCCTATAGA 539129 37 100.0 35 ..................................... TCTAGCCAGTGCGATCACTCCTGAGTTAATAAATC 539057 37 100.0 39 ..................................... TACTCTCTTCTCCTCCAATGTTTTCTAAACTCATTGTTG 538981 37 100.0 35 ..................................... GTTAACACCTATAATGAACAAGGAAAATCTCGTCG 538909 37 100.0 35 ..................................... CAGATTTTATAATAGAGTCACCTGGGTTAATCCCT 538837 37 94.6 36 ................................T...A CTAGATTTAGGGGATTGTGCTAGAATCTGAATTATG T [538803] 538763 37 100.0 34 ..................................... TATTTTGGGATGCCCATATAAAATTCAAGGAAAA 538692 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================================================================================================================================================================================================================= ================== 19 37 97.6 48 ATAACAATCCTCAGCAATGGGGATTGAGAATTGAAAC # Left flank : TTTGGGGCGGTGCTTTCTACGGGTTTAAATGCGGGTCAAGTTTGGGGGCCATTACAAATTTCTTGGGGGCGCTCTTATGATCCAGTTTTGCCTATTTCTGCTACTATTACCCGGTGTGCGGCGACGGAAGCTAAGGAGAAAAAAGACAATAAAACGATGGGACGGAAAGAGTTAATTCCTTATGGATTGTTTAAGATTGAAATTCATTATAACCCGGGTTTGGGCGGTAAGGTTTCTAGTGATGATCTCCAATTGTTCTGGGAATCATTATTAAATTGTTGGGAATTTGATCGCAGTTCTTCCCGTTCTTCAATGAATTGTCGTGGCTTATTTGTGTTTACCCATGATAGCAAATGGGGAAATTTTCCTTCTCATAAATTGTTTGATTTGTTGTCAGTAGAAAAACAATCTGATATCCCTCGAAGTATTAATGATTACGAGATTAAAATTGATGGGCAAATTCCTGATGGTGTGAATCTCTGGGATATTAATCAATAACC # Right flank : CAGAATCAGACACTATTTTGAATTTCTTGAATTAATTTAGCATAGGTTTCCGCAGGGCGATCGCCTAAATGATCCTCAATTTCCCGTTCTGTTCCGCGATTAAAATCAATACTAAATAACCCAAACCTGGGCGTATAAGACCCCCATTCATAATTATCTGTTAACGACCAGTGCATATATCCCAAAATCGGAATATTTTCCTTTAATAACTGTTGAATTTGGCGCAGATGGGCTTCTAAAAATTGACTGCGGTGCAGTTGGTCAGAACGACGAGTTGCAATACTATTATCCGGTTTTCGACGTAACGCCATGCCATTTTCAGCAATTAAAATCGGGAGGTTATATTCCTGAGCATAATATTTACAGAAAAACGATAATCCTTCAGGGAGCGCTCGCCAGTCCCACCATTTACTCGTAATTCCGGTCATTAACCAATTTCTAATTCCTTTAGTTTTAAATTCAAAATCAGAAAAAGACGGTAAACGGAACGTATGAGCAAT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:-1.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAACAATCCTCAGCAATGGGGATTGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 55395-59329 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889762.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 55395 36 100.0 37 .................................... GAGAGATTGCTTTTATTTCTTTAACTAAACTATTTAG 55468 36 100.0 46 .................................... TAGAATACATAAACTTAATGGCGTTAGGGGATAATTCAGGATGTCT 55550 36 100.0 41 .................................... GGTGTTCGTCAATACTGCTGTAATGCTCTAGCTGCCCTTTC 55627 36 100.0 41 .................................... TTTATAGGGATATAAGGTCTTCCTTGTATCTCTCTTAGTTT 55704 36 100.0 36 .................................... AATACTGGGAGTTCATTACCCAAGGTGAATTGACCT 55776 36 100.0 39 .................................... TTACATACATTTCCCTCCCCTTCTTTTAGTTGCGGGATA 55851 36 100.0 41 .................................... ACTTGCTATCGTGATTGTTCGCGTATGCCTTCACCCTTGGA 55928 33 91.7 0 .................................--- - Deletion [55958] 55961 36 100.0 39 .................................... TAGAGATTCGTGAACTGTTTCCAGGGTTAGCATTTCCTT 56036 36 100.0 41 .................................... GAAGCCAGTCGTTTAAGTTGATGAAGACGAAATATTTTTGA 56113 36 100.0 36 .................................... AAAACAGATCGGAGTCCATTACCCAGTCCTTCTCCT 56185 36 100.0 39 .................................... AAAGGAGAAGGTTATTTCCTTATGGAAAAGGAAGATGAA 56260 36 100.0 40 .................................... GTCAATGCTATAAATAGTGATTTCGTGCTGTGTACCGTTA 56336 36 100.0 37 .................................... CATTGGTTATTCATACTTATCAGGTGGCGAGTATGAA 56409 36 100.0 50 .................................... CTGTCCGCAGAATCTCAGCGTCTTTAGACCTGAGAGTGTCAACTACGGAC 56495 36 100.0 39 .................................... TTAAGACTTGTTCATGTGTGAGTGGAGTATCATTAGGGC 56570 36 100.0 41 .................................... ATCAATGAGAAAACGTCTATGGAATAGATTTTCCCGTTCAT 56647 36 100.0 36 .................................... AGCTTTCATGGGTATACCTGATATGAGTTGAACAGA 56719 36 100.0 39 .................................... AAGTGGATTGAAGAAATTCTTAGTGGTAATAGACCTCAA 56794 36 100.0 35 .................................... TCGATCTTTTAGTAAGTGAATCAATTGCTATTGAA 56865 36 100.0 43 .................................... GAAACGTTCATGAGAGAACTCAAAAGCATCATATTTCATAAGG 56944 36 100.0 40 .................................... ACCCCTTCCAAGCTTACGACCTTTGGTAAGCTTACTTTAG 57020 36 100.0 35 .................................... AAGATTTAAGAGCATTGCTTAGTCTTACCTTTTAA 57091 36 100.0 37 .................................... TCAATTAACAATTTCATGAGTAGGAGCATGGGAGATG 57164 36 100.0 40 .................................... TAATAGTAGTCATTGTCTTATTCCAAATAACTTCAGAAAA 57240 36 100.0 42 .................................... CTACAACTCCCTGAATCTTAAATGTTAGACACCAGCACAAAA 57318 36 100.0 40 .................................... ACCAATTTTGGGAGTAGTTTCGACAAGTGTTTTTGACATA 57394 36 100.0 40 .................................... AGAGCTAATAGCTCTCTACTGAACTCCCACAAGTTGAGGT 57470 36 100.0 41 .................................... TTGTTTCAATTCCTGATAGGCAATAAAAGGAATTTAGATGG 57547 36 100.0 43 .................................... TAATCATGTAGGGGATAGCACCTTTCTGCTGATTACTTGGAGT 57626 36 100.0 40 .................................... CTACCCATACATGACCTACATTAGGAATGTCATCTTCCTT 57702 36 100.0 40 .................................... TGCCCTCTCCCTCCAAGAGTTGCACCCAGTAATTACGCAG 57778 36 100.0 40 .................................... AAGTGTCTCTCATGTCATATCTCATAGTTAGAGCACATAG 57854 36 100.0 39 .................................... ATAGGAGAAGCACAAACCATCTTTGGCATTACTCGTAAA 57929 36 100.0 42 .................................... AATTCAAGTTCTCCGTGGATTCAATAACAGCCCCCTACTCGG 58007 36 100.0 45 .................................... TGGATTAACCTTATCTAAATAGTTCTGACCTTACTTATTAACAGC 58088 36 100.0 43 .................................... AGATAACTAATGAACTTTCACATTGATATTACTACCTTGAGGT 58167 36 100.0 40 .................................... ATGATTTCCACGTCATTCCGACTAATTCAAAAACTACCAT 58243 36 100.0 36 .................................... TGTGTAAGGGTGTGTAACGCTTCTTGAGTGCGATCG 58315 36 100.0 42 .................................... TACGCGGGTTGTACGTCCTTTAATATATTCAATACTTCCATA 58393 36 100.0 38 .................................... AACCACTCAGGCATGCATATCTACCTCCTATGTACACC 58467 36 100.0 38 .................................... CACCCTCTAGTTCTTGTGAGAGTTTTATCTGCTCTGAG 58541 36 100.0 31 .................................... CCCAACTGTAATCAAATTTGATATGCCCTTC Deletion [58608] 58608 36 100.0 37 .................................... AGTTTTTGCCCTATTACTAATCTATCTAATCGCTTCC 58681 36 100.0 45 .................................... ATGAAGTTAGACATGATTCAGGTTTTTGTTGTTATTTACAACAAA 58762 36 100.0 42 .................................... TCGTGTCCAACCTTTGTCTGATTGTTCATACTTCTGTTGAGC 58840 36 100.0 35 .................................... AAATTGTCTACTGTAACAACTAATGATTTCATTAA 58911 36 100.0 42 .................................... CAGCTACATATGTAATACCTTTTAGTTCTTCTAACACTTCCT 58989 36 100.0 41 .................................... ATATCAAGAGATTGACACTTAGTTCTTAATGCTTGCTTTTT 59066 36 100.0 41 .................................... CCCACCTTTCCCTGTTCTGGTTAGTAAAATCGCGGCAAGGA 59143 36 100.0 37 .................................... AATATTAATCCTGATTTATTCAGGCAATAATCAACCA 59216 36 100.0 42 .................................... TCTGGCTCCAACATTCCTAATCCAACCGTGATGCTGAGATAG 59294 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 53 36 99.8 39 GTTGCTTCTATTCTTAGAAGTAGAATTAATGGAAAC # Left flank : GTGTTTGAATGTGTTTTGCCTCAATCAAAATATATTGAGTTACAGAAACGCTTGGAAAAACAAGTGAATCTAACTGAAGATAACCTGCGGTTTTATCCGCTTTCTCGCCATACCTGGGGAAGTGTGGAAACTTGGGGCAAAGGGCCAGAGATTACTGAATATCCCAGTTCAATGATTGTTTAAGGAGGTTTAGGGCGGCTTAATGAGCCTCGATATTCCTCTATACAACGGTTTTAGGCTTTTGACAAGGAAACGGAAGCAGGGGTTTGGATGATTAAGATGAGGGAGGTTAGCAAGGATTATCAACGATTTCATGGGCTTGCGAAGCTCAAAGAAAATGGCTGGAATACTTATAGTTTCGTTGGGAGCCTCGATATTCCTCTGGGTAAGGCTTTTGTCGATTTTAGGGAAAGGTTAATTATCGCTTCAGCCAACGGTTTTTCTGAGCCTCGCAAACCCTATCTGGACAGCCGATGGTGTCTGGGTTTAAGATAGGAAGG # Right flank : ACCCTGTACCCGGTTGTGAACACAACAAAATTGATGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTTCTATTCTTAGAAGTAGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 240593-238672 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889803.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 240592 36 100.0 35 .................................... AACAAATGAGAATTCCTTTCTGAGAGTTGTAGAAT 240521 36 100.0 39 .................................... CAATGTCGTCTTTCGACAACATGAGTTCTTGGTCGTTTT 240446 36 100.0 37 .................................... CAAGAGCTATTATAGCTCCAGCTCCATAAGAAGCATT 240373 36 100.0 41 .................................... ACGTTCAATGGCATTTCAGCCACAAGGATTTCGATACGTGC 240296 36 100.0 43 .................................... TCTTCTTCTGTATAAGCCATCACAAAGATGGTCTTATCAATGC 240217 36 100.0 38 .................................... TGGATAATCCACTGCTTGGATTAACAGAAATTCTGTAT 240143 36 100.0 41 .................................... TGGTGTAACTATATCTCTAGCTAAACCACACTTACTCAAAC 240066 36 100.0 42 .................................... TATATGGATTAGGCATATTGTCCATGAAGCCCAACCAGGCTG 239988 36 100.0 41 .................................... AGGGATTGTTGTTGGGAGTAATCAAGGGAGAATACCCAATG 239911 36 100.0 40 .................................... TTCTCCTTAACCATTAAATGAAGTAATTACAATTGACTCT 239835 36 100.0 43 .................................... TGTTATAACTTTCGTCCTCATTATGAACAAAACAGTTATATGT 239756 36 100.0 46 .................................... ATGGAGAAGTAACAACAGATTGACGACCGAGTGTGGAGTTAGATTT 239674 36 100.0 41 .................................... TTTAGCTTCGGCTCCTGCCGAAATCCATTCAAGCATTTGTT 239597 36 100.0 35 .................................... CAGATTTGGCAGGAGTTAGCAACGGAAAAGGGTTG 239526 36 100.0 37 .................................... GGTTTAATTAAAGAAAAGCGATCGCATTTTATAAAGT 239453 36 100.0 42 .................................... CTCAAGGGACTCAACTTTGTATTGATAACAGGTTCCAAAGGA 239375 36 100.0 35 .................................... AGATCTGGATGTTCGTACAATGTCACCCATTTACT 239304 36 100.0 36 .................................... CTCTTGTACGTCTAATGCTTGAGTTTGGTCGTTCAA 239232 36 100.0 36 .................................... CTTGCTCAAAAGCATCAATAAACATCGGAACAAACT 239160 36 100.0 43 .................................... TTCGTGGTTACCGTCCCTAACTCGGATAAAATATCGTCAAATA 239081 36 100.0 43 .................................... TAGGGAAGGATGGCTTCTATCTCTTCTTCCGAAGATGTGTTTT 239002 36 100.0 39 .................................... TTGTCATAGAGTTTGTTCAGTTCTTGCCGGAGTTCACAA 238927 36 100.0 41 .................................... ATTAAATCCAGTTCCCATAAGCGGGTTCTGGTACCTCGGAG 238850 36 100.0 34 .................................... TCGGAATGTTTTCCAAAAACTCATTGTCAGTTCA 238780 36 100.0 36 .................................... GTAGCCAATACAAATTAGTCGAAGTCTTCTATTAAT 238708 36 80.6 0 ...........C.........C...AACC......T | C [238685] ========== ====== ====== ====== ==================================== ============================================== ================== 26 36 99.3 39 GTAGCGACTTCTATTAGGAAGAAAAGGTGTTGAAAC # Left flank : TTTAAAGCAACTTAGCCACAGTATTGATCAGCAGGTGCGTCAACTGGCGAAAGTTTGGGGTTTTCAACCGACTAAAACGCCGCAACCGGGACGCATTTACAGTATTTGGCGGGGGGAAGCGGACGCCTGGGAAGAGTTGGTGCATGGGGTGTGTAGCACTAAGGCGGCTAACCGTCCGGTTTGGTGCGGGAGTTCTAATAACCGACCTTCGGGGTATGGGGTGCGGGAACATTCGGGTTTTTGTTTGGTGACGGTTTTTGATCCGAATGTGGAGAGAAGTTTACCGAACTTGGAGTTTAGAAAAATTTATGGTTGAGTTTTGCGAGGCTGAGGGAAAATGGCTGTGATGTCGATTCTGCTGTTGGGAGCCTCGCTGCTGCTCTGGGTAAGGGTTGTGGCGTTTTGGATGTTGGGGAAAATCGGGTTTGAGGGGATGATTTTTCTGAGCCTCGCAAACGGCGTCTGGATAGATTGCCCCGTCTAGGTTGTAGAATAGAGGG # Right flank : AAATTTCAGGCTAAAAGCGAAAACCCGTTAAAACGGGTTAATAAAATTCAGTCTTGAGTTATCTTTAGATAACGTTAGCTTTTAGCCCGAACTTTAGTTCAGGGCTAAGATATTTTAAGTAGGGGCAATTCATGAATTGCCCCTACTTTAATTTAACCGAGATTAAACAGGCAATTTAGAGTCTTTCGCGTCCTTAATTCGCATTGTCCAGAATTGAATTGTATCAGAAATTTCTATTAACAAATCCGTTAATAAAACCTGCTGATTAAAATTCAAATTTCTGAACCGTTCTTGAAATTGTTCTGTCGTCATCTCCGCCTTAATATTGAGGTGAGATCCGACAATTTTACACAACACCACTCGCGCCACACCCCAAGCAAAATAACGGCGTTGTTCGTCTGAACCCCCCGCAGCATTGGGAACACCGCCTCCTAATAACACCGAAGAACGAGACATCGCCCAAAATCGTTCCATGCCCCAACTTGCCACATAGTCACTAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGACTTCTATTAGGAAGAAAAGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 260570-259724 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889803.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 260569 37 100.0 35 ..................................... CCTCGCTGGCTTCTGGTGGGAGTTTCGGACTACCG 260497 37 100.0 39 ..................................... CCCAAATATCTGCTTTTCCCACTTCTCAATTGTTTCGGC 260421 37 100.0 35 ..................................... GCTGTAGGGGAAGATGCTCAACGATTACTTCGATT 260349 37 100.0 34 ..................................... ACTAATGACATGACCTCCGCCTTAATGCAAGCTG 260278 37 100.0 35 ..................................... ACATCCCTCCCGCAAAGACTCCATCCAAAATCCCC 260206 37 100.0 36 ..................................... AAAAAAGCCTTTAGGCTAATTAAGGATAGGGAGGAA 260133 37 100.0 45 ..................................... GAGATGATCCTCTAAGTCTGAAGCCTTTAAGGAATTAAGATGATG 260051 37 100.0 35 ..................................... AAAAACATTGTTTTTTGCTCCATTGAATTTGGTAA 259979 37 100.0 34 ..................................... ATAATCCTTGATATACGAAACTAATTAACTCGAT 259908 37 81.1 37 ...........A.T.C.G....GAT............ TCTGATTCAGCCTTTTTTAATTTCATGCTATGATTTC A,G [259888,259896] 259832 37 91.9 35 .........GA...........A.............. TACAAGAAGATAGCCCTGAAGGGCTTACTACATAG 259760 37 67.6 0 A.......TGA........TT.A......TA...TTA | ========== ====== ====== ====== ===================================== ============================================= ================== 12 37 95.0 36 GTTGAAATCAGCTATAATCCCTTTCAGGGATTGAAAC # Left flank : GAACAATTTGATGCCTTGGGTTATTTAAACAAACACGCGGGGGATTTGAAAGATAGATTTGCGGTAGAATCAATTACAGGTTCGCAAATTAAACCGATTTTACAGCGCTGGGGTTTTGCGGGAATTGGTATGATTAAAGATCCCCTTTTACCCCATATTGAATTTATCCGAGTTCAACAAAATTAAGAGATTATTCAAATTGAAGTCATAAACCGTCTCATCCTCTAATATTTGAGCATCCCCCGAAGTTGCGCTAACCTATCGCTGTTGAAATTACCAGGGCTGAAATTCACGTCTGAAACTGTTGTCTGTTCTGGGTTTGGGGCTTCTTCAAGGTTAAATTAGGTTGTCGCAATTCTTAAACGCTATATCTGAAGAGGGTTTTAGCGTTTTTTGATTTTTGCCTGTTGCTAAGTCGATGGCTGAAATGGTATATTCAGATCAGGTTAGCGCGATCGCACCTTGAAAACTGCATAGATTAAGGCTCTCAGAAGCCTGCG # Right flank : ATATTTTAGGCTTGATTTTCTAAAATATCTAATACTGCTTTAGGCGATAACTTATCCTTAAACCATACCACAGGAACCGGGAGACGATTAATATTAATTCCAGCATTTTCTAAATTCAACCGTTCAGAAATCGCTAAAATTAAAGTATCACATCCAGAACGTTGCACCTGATAAAACTTCTTTTGTAAATATTCCGGTCGCCAATAGCCAATAATCTCTAATAAAAACACTCGTCCATCAGGATGAACTAACCGAAAATCAGGAATCATTACACTCCCCGGAAGCGGAATTAAATCCACTTCTCGTTCTAATTTCCATTCTGTTTTTAACTTATTCCAACGTTCAGCAAAGGATTGTTCAATCATACTATCATAGGGTTTACCCGGTGGATAATGACTGACCAAACCGCAATCCGAATTCAAACTAAAATAACCCGTTCTCACCACACGAGTATAGGGGTCACGTTGTTGTAATTTTGCCTTTAAACTCCATTTTGTGAC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAGCTATAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 673878-674793 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889813.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 673878 37 100.0 45 ..................................... ATCGGGATTTGTCGGCTGATTGGCATATTTGGTGCGCTCAATATG 673960 37 100.0 41 ..................................... TTCGCTAATAACTCACTTTACATAACCCGTCGTTCCTCCTT 674038 37 100.0 34 ..................................... CAATTCTGTTTCCCCTTCTTTTATCCGTGTGGCA 674109 37 100.0 36 ..................................... AACATAAACATTACCAATAGGATCAATCCATTTATG 674182 37 100.0 40 ..................................... ATCAAGCCAATTACTGGGGAATGAATAGGCTTTACTGTTA 674259 37 100.0 36 ..................................... CTAATAGTAAGTGTTGAGGCTGAGGATACAGCTTAA 674332 37 100.0 34 ..................................... ATCTGGTAGGAAGATCTTACATCTTCCCTAACCG 674403 37 100.0 33 ..................................... ATCCTTGCCTGGTAATCACCGAGGGATTCTTTA 674473 37 100.0 35 ..................................... GCATCAGCTATCGTTGCAGATGTTCCTGAAGGTTT 674545 37 100.0 33 ..................................... ATGAACTCTCTGAAGGTAAAACGGTAAAACAAA 674615 37 100.0 34 ..................................... TGGGATTACACGGATGGAAAACAATAATGATTTT 674686 37 100.0 34 ..................................... GGTTCGATTTCCGTACCACTACGGCGGCGGCTTT 674757 37 97.3 0 .......T............................. | ========== ====== ====== ====== ===================================== ============================================= ================== 13 37 99.8 36 GTTTAAACTACTATTAATCCCTATCAGGGATTGAAAC # Left flank : CCGAGTTTAGGAAAACCGGTTTTAGTGTTAAGAACCACAACAGAACGTCCTGAAGCGGTGGAAGCGGGAACGGCTAAATTAGTGGGAACAGAAGCGGTGGATATTTTCACAGAGGCGAGTGTATTATTGCAGGATGAAATCGCCTATCAAAATATGGCAAATGCCATTAATCCCTTTGGGGATGGTCACGCTTCGGAACGGATTATTAATATTATTCAAGGGTATTTTCAGGGCTGAGGTTTGCGACAAGGGGGAGGTGTTGAAATTGGAAAGGGAAAAAAATCGGCTGTATCTCCTTCTGCATAAGGGTTACAAGGAAATTGAATAAAAAATCGGTTGTCGCATTTTTTGGAACCTCTGTATCGTCAGGATTTCAGCCGTTTTTTGGGAACAATCCCTTGACTTTTTTTCCGGTTTGGTGGTATATTTTTCTCAAGTGGCAACAGGTTGTCGCAAATGAACCTTGAAAACTAAATACAATGCGGGTTTCAAAGCGTGCA # Right flank : CAATTTTTGGAATTTTTTTTTGTGCTGACATAATGACTGAATACGTTTCTTAGTGAAAAAAGTAAAGTGCTTTTGTGGTTCTTTCAAAAATCAGAGTTTTTAGGCTTAAGTTAACAATAAGGGGTGATATTAACTGTTTAAAGACAGCCCTGAAGGGCTTACTACGGGGTGCGTAAGCCAAAATAAGTTAAAATTAAATCGGTATTTCCTGTGTTGGTGACTTCGTGAACTTCTCCAGGTTCCACTGCAATACAAACTCCTGGTTTTAATTCATAATTTGTACCATTAATCGCAATATTTCCCAAACCTGATTCTACAAAAAAAACTTCACACATATCAGCATGGGAATGACCTCCCGCCACTTGTCCGGGGGAAAAACACGCTTGAGAAAAATTCGTTAAATGGGGTAAATCTCCTAAACTCAACATCACCTTTTTTTTAATCGCTGGATTATGGGAAACTTCCTGTTCTGGAATTTGGTTTAAATCGGTTATTTTCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTACTATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 189207-188439 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN889815.1 Planktothrix tepida PCC 9214 isolate BBR_PRJEB10993, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 189206 35 100.0 39 ................................... TTGCTTACATTAAGAAGCGGAATTCCGCATAAAATAGGC 189132 35 100.0 37 ................................... CAAGAACATCAATATAATCCGGAACTGTTGAAAATAA 189060 35 100.0 39 ................................... AGTACCTATTTATTTTTAGGCACCCAATTTTGACTGAGA 188986 35 100.0 37 ................................... AAGTGTATTTGCTATAACCTATTTTAATGGTTTTAAA 188914 35 100.0 40 ................................... TATAAAGTCAGCCGGAGGACGATCGCCCTCCGAAAAACCA 188839 35 100.0 36 ................................... CAGACACACTCAAATTTTCGGTGCTAACGACCACAT 188768 35 100.0 40 ................................... TTTTGCATGTCCATTTTTTTTGATGGAGAATTTGAGTAAA 188693 35 100.0 36 ................................... TGGAGTCTCTGGAATTTCAAATTTCCGACTAAACTC 188622 35 100.0 37 ................................... AAAACGAATTACCCTCAGTTAAGTCCTCCCACTCGGT 188550 35 100.0 42 ................................... ATATTTGATGTTGGTGTAACAGAAACTTTAGCACTGTAAAAA 188473 35 91.4 0 .............................A.C.G. | ========== ====== ====== ====== =================================== ========================================== ================== 11 35 99.2 38 CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Left flank : GACTCGTTTGTGAGTTATTTAGTTAATTCTAAAATTTTGTTGCTTGAAGATTTTACGTCTCCTGATGAATTGGGTGGGGTTTATCTTCAGCCGGATGCACTCAAAAAGTACCTCAAACACTGGGAGGAAAAGCTATATTCTGAAGTGACTCATCCTCAAACAGGATACAAAGTTAGTTTACGACGTTGTATTGAGTTACAAGTCCGAGAGTACATTGCGGCTTTGATGGGAGAGGTGGAGGTTTATCGTCCGATGATTTGGAAAAATTAAGGATACAATTTTGCTAATAGCAGGAGAAGGTTAAGTTGCTGAGGGGGTCTGGGAATTGCTGAAATCCTTATTATTTCGTTGACCCCCTCAGATTGCCCTCTCTGTCTCGGTTTCAAGCATCGTTTATTGTTGTTTATTGAGAATAAGTAGCATTTATTGAAGGCGAAACTTGACGCCCTCAGATTTAGGGGTTTATAATCCAGTCAGAGTAAGGCTTCTACGAGCCTAGA # Right flank : AAATTGATGATTTTTTAACCATAGCGGTGTGCAATCGTATGGATTACAGAAGTGCCAGCGTCCTCGCTGGCTGTTTTTTTATAAAAAAGAGCCTCTGTAATTCACGCGATACCACAAAGCGACGGCTACGCCATCTAATACCGCTATAAATCAATTAAACTTTGATTTGTCCGGCTACTTAACCAGTAGTTAAATCTTAAAATTTATCTATATAAACTCATCAAGGGTTAGAAAATCTTTGGGAGTAATAATCTGATAATGAGTTTAAGATTCATCAGCCAGTAATTCTTCTAAGATGTCTTCGGTTAGTCCTTGAGCTTGAGCATTTCTGCCAAAAGTCCCACAAACACTCAGTAAGTCTTCATCTGGATTTTTGGGATTCTTCTGGATTTCTTGAATCAGTTGTTCTTGTTCTTTTGCTGTCAGTTGGAGGACAAGATTAAGAATTTGATCAAAGGTTAGAGGAAGTTGATAAGTTTTTTGATTCATAGTGAGTTATG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTAAGAAATTAGTCGTATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //