Array 1 41965-42893 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRAY01000022.1 Pseudomonas aeruginosa strain env103 NODE_22_length_90134_cov_10.7411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 41965 28 100.0 32 ............................ CGGAAAAGCTGATGGTCGAGTTTCTTCATTTG 42025 28 100.0 32 ............................ TACCGCTGCCAGATACTGCGCTTCCAGATAGA 42085 28 100.0 32 ............................ TTCTTCTTGCCGCGCGCCTTCGCCGCCTCCAG 42145 28 100.0 32 ............................ AGGGCTCCATGGACGGAATGAGTCGGCCCTCC 42205 28 100.0 32 ............................ TCCAGGTGCTGGCAAACGTCAGCCCCTTTGCA 42265 28 100.0 32 ............................ TGGAAACACCGAGCGCTGACGCCGATCTCGGG 42325 28 100.0 32 ............................ TTCGAGTCGTAGCGTCGTCACGGCCGTCGATG 42385 28 100.0 32 ............................ ATCTTGCGCAGGGCGTAGACGCATACCAACCA 42445 28 100.0 32 ............................ AAGTGCAAGAGAAGTGTGCGATTAGCGCCGGA 42505 28 100.0 32 ............................ CACCGGTCCCACCGTCACCGCCACCCGTTCCG 42565 28 100.0 32 ............................ ATGTAGTAGCGGTAGCCCATCGTTTGCGCTTT 42625 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 42685 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 42746 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 42806 28 100.0 32 ............................ AGTCCGCCCAGGTGCTCGAGTACCGTGTCGAC 42866 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCTACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52585-51417 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRAY01000022.1 Pseudomonas aeruginosa strain env103 NODE_22_length_90134_cov_10.7411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52584 28 100.0 32 ............................ AACTCAAAATTGCCCAATCAAACCGCGGGATA 52524 28 100.0 32 ............................ GCGTGCAGCAGATAGCCCTCAAGGAAGCTCAA 52464 28 100.0 32 ............................ AGCAACACCAGCAGCAACGATTACAAGTGGTT 52404 28 100.0 32 ............................ TATAAGCATGGGTCTGATGTAGTTGTTCGAAC 52344 28 100.0 32 ............................ AGCCATTTCGGCGAAGGGACTGAAGAGGGCCT 52284 28 100.0 32 ............................ TTTGGTGAGGCTTGCGCTCCCTGGGTGTTCGA 52224 28 100.0 32 ............................ CAGGAACGTTTGCTCGCGCTTTGATCTCAAGC 52164 28 100.0 32 ............................ AAGATGGTCGACGTGCTGATCCTGGCAATGCG 52104 28 100.0 32 ............................ GTTCCATATCCAACACCGGGACGGGAGTCCGA 52044 28 100.0 32 ............................ ATCCTGATATCCGGCGCTGCTTTGCCGACTAT 51984 28 100.0 32 ............................ TCCCGAGGAAACGCCATGCACACCCTCAACCT 51924 28 100.0 32 ............................ TTGCCGGTGGCCGTTTCGACGATGTGGAAGAA 51864 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 51804 28 100.0 32 ............................ TGGACGAACCGCAGCAGCGGTACGACGTTGTT 51744 28 100.0 32 ............................ TTGCGGATCCGGCGGTAGACGACCATCCGCAC 51684 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 51624 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 51564 28 100.0 32 ............................ TCGACATGGCGACGGCTCTTGAACGGTTCTAT 51504 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 51444 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAATGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGACGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 454681-455440 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRAY01000002.1 Pseudomonas aeruginosa strain env103 NODE_2_length_597209_cov_10.4793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 454681 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 454742 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 454803 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 454864 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 454925 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 454986 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 455047 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 455108 29 100.0 32 ............................. CTCGCGGACAACACCCCGAACCCCTACGTCGG 455169 29 100.0 32 ............................. CTGCGCGTTCACGCCGAAACCCTTGGCTGGGT 455230 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 455291 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 455352 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 455413 28 79.3 0 A..........A..C..-.....A....T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 464033-464976 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRAY01000002.1 Pseudomonas aeruginosa strain env103 NODE_2_length_597209_cov_10.4793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 464033 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 464094 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 464155 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 464216 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 464277 29 100.0 32 ............................. GCGCAGCTCGATCCTGAGCAGGTCGATGCGTA 464338 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 464399 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 464460 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 464521 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 464582 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 464643 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 464704 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 464765 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 464826 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 464887 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 464948 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : CCTCGACTGTCGGCACCTTGCTGGTGTGGGTCGGTGAGGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //