Array 1 25792-24568 **** Predicted by CRISPRDetect 2.4 *** >NZ_APUB01000099.1 Neisseria meningitidis 2001001 gnm2001001.contig.98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25791 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 25725 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 25659 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 25593 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 25527 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 25461 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 25395 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 25329 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 25263 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 25197 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 25131 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 25065 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 24999 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 24933 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 24867 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 24801 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 24735 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 24669 36 100.0 30 .................................... CCGTAACTATAACGGTCCTAAGGTAGCGAA 24603 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //