Array 1 1180-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRI01000039.1 Rothia kristinae strain SA14 contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1179 28 100.0 33 ............................ CCGACAGGCCGGCAAGAACGACATCCCCGTCGC 1118 28 100.0 33 ............................ GAGTTGGGGCGCGGCGCACGGAGGGCGGTAATG 1057 28 100.0 33 ............................ GAAGGCCCCGCCCCTCACGATGGAGGGGCGGGG 996 28 100.0 33 ............................ GCACATCGTGCAGGCGATCAACGCCCACCAGGG 935 28 100.0 33 ............................ GCGTGTGAAGGCCGCTTACCTGGCGCTGCGCGG 874 28 100.0 33 ............................ CTTCTCGGTGAGGCTGCCGAGCAGCCCCTCGAG 813 28 100.0 33 ............................ GCGCTGGCTCGACAAGCGCGGCCACGAGTACAC 752 28 100.0 33 ............................ GGTGCCGGTGAGCCCGCGGATGTCCAGGGCCTG 691 28 100.0 33 ............................ GACGGGCAGATCGTGTTCGCGGACACTGACGGC 630 28 100.0 33 ............................ GTGAGCGAGCACCTGGAGAAGACCGAACAGGAC 569 28 100.0 33 ............................ CCCAGAGGCGTTGCGTTCGAACCGCCCCATGAA 508 28 100.0 33 ............................ CAGGAGACGCGCCGGGGCCGCCGGGCGACGCTC 447 28 100.0 33 ............................ GTTGTACGTCCCGACCTTGGGGGTCTTGTTCAC 386 28 100.0 33 ............................ CTTGGCCTTGAACTTCTCGGTGAGGCTGCCGAG 325 28 100.0 33 ............................ GCTGATCACCCTCGAGACCACCATCGCCGAGCA 264 28 100.0 33 ............................ GAAGGATGTCCCCTCGAATCAGCTCAGCATGGT 203 28 100.0 33 ............................ GTACATGCGCCCGGTCTGAGAGGCCCGCGCTTG 142 28 100.0 34 ............................ CTACGGGTGCGGGATGCTCACGCTCCACGAGGAC 80 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 19 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCATGCGGGGATGAGCCGGTCCGCAGATCCGCGAGCGCATCCGTCCACG # Right flank : CGGTGTTGTAGCGGCTTGCAAGCAAGCTGGCAAGGCCCTCCCCGCGCATGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 900-16 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRI01000001.1 Rothia kristinae strain SA14 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 899 28 100.0 33 ............................ CACGTGCTCGGCTTTCAGGAGCCCGTTATCGTG 838 28 100.0 33 ............................ GGTGTGGGAGTCCATCAGCACCGGCGGCGGCTC 777 28 100.0 33 ............................ GGATCCCGCGTTCATGATCATCGTCAGCTGCCC 716 28 100.0 33 ............................ GGGGAATGATGGGTGCATAGATCGGCGCCTCGT 655 28 100.0 33 ............................ CGAGTCTCCGGCCTGCAATGCCAGTGACGTTGC 594 28 100.0 33 ............................ GGGCAGCACCTCCGGGAACAGCTCGGCAGCCGC 533 28 100.0 33 ............................ CCGGGCGCTCTCGTCCTTGTACGCAGTGAGGGT 472 28 100.0 33 ............................ CCAAGATGCGCGGCGTCGTGGGCTATCTGCTCG 411 28 100.0 33 ............................ GCGAAAAAGTGGATGGGGTGCTCGGAATCGATG 350 28 100.0 33 ............................ CCATCAATGAACCATCAAGGGGAACCCCTACTG 289 28 100.0 34 ............................ GAACCCCCGTGCGCCAAGCGCCGGGGGTTCGGTG 227 28 100.0 33 ............................ GCATGACCGAGAAGAAGAGCGCAGCCGATGAGG 166 28 100.0 34 ............................ CGGCCGACGATGCCGAGCCGGAGTCAGAGAACGT 104 28 100.0 33 ............................ CTGGGTGTCGAGGCCGGTCGCATCGGACAGTGC 43 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 15 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CACGGGAGAGGACGGCGTCGAACCGGGAAGGAACTATGCCTTCGAGGACGAGGACTCCGCGTCATGATGGTCCTCGTGCTCACCGCCTGCCCAGCAGGTCTTCGCGGCGACCTGACCAAGTGGCTCTTGGAGGTTAGCCCGGGGACATTCGTCGGCAATGTCTCCACCCGGGTCCGTGAGAAGCTCTGGGACCGAACGAAGGAGCTGTGCCGAGACGGGAGAGCACTGCTGGTATATACATCGGATGGCGAGCAGCGCATGCGCTTCGAGACTCACCGACACGACTGGGAACCCGTGGATATGGAGGGCCTGACGCTGGTCAGACGGCCCTTGCCGAGCAGCCGATCCGCCGAGAAGAATCCCCGGCGTACCGGTTGGAGCCAGGCATCCGCAGCCGCCCGCAGCCGACGCCCCTCCTGGAGACGATCGCGCTGATGCGGCACTCCGTTAAACTGAATCTGAACCGGCCGACTTCCTGACGTATCCCCAAGTCAGGAAGA # Right flank : CGCTCATGGGATCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 38-1836 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRI01000152.1 Rothia kristinae strain SA14 contig_152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 38 28 100.0 34 ............................ GAACCCCCGTGCGCCAAGCGCCGGGGGTTCGGTG 100 28 100.0 33 ............................ GCATGACCGAGAAGAAGAGCGCAGCCGATGAGG 161 28 100.0 34 ............................ CGGCCGACGATGCCGAGCCGGAGTCAGAGAACGT 223 28 100.0 33 ............................ CTGGGTGTCGAGGCCGGTCGCATCGGACAGTGC 284 28 100.0 33 ............................ GCTCATGGGATCCATTGTGCGCCTTTCTAGAGG 345 28 100.0 33 ............................ GACCGCTCGGTCGCTCTCGGGCTCAAACTTCGA 406 28 100.0 33 ............................ GTTTGGACGCGCTGCTGGAGCAGTGAGATGTCA 467 28 100.0 33 ............................ CCGAGGACACCATGACCGCAATGCTCAACACTC 528 28 100.0 33 ............................ GCGCCTCGGGGCAGCCCCTGGGAGAGCAGGTGT 589 28 100.0 33 ............................ CACTAGCCCCTTTGCCTCCAGCTCTGCCTTGGT 650 28 100.0 33 ............................ GGGCATCCTCCATAGGGCCTTGGTGGGTGAGCC 711 28 100.0 33 ............................ CGAGACCGTTCGCGAGTACAAGGCCCAGGAGGA 772 28 100.0 33 ............................ CCCGACGTGCGTGCCGTGGTTGCGGCACTTCGA 833 28 100.0 33 ............................ CACCGGCCCCTCCTTCTCTGTGGCCCGCATGAA 894 28 100.0 33 ............................ CGTCGGCGGAATCACCTGCACCAGGCCCTGGGC 955 28 100.0 33 ............................ CTGGCGGAGGTGCCGGTAGTCGGCTCCGAACTG 1016 28 100.0 33 ............................ GGAAGCCGATGTGCCGTGGTGGCTCCGCGGGCA 1077 28 100.0 33 ............................ CCCGCGGAATCGTCGCGCTGTCCATCAGAACGG 1138 28 100.0 33 ............................ GTAGCCCCAAAGTAGCCCCGGCCGGGTTGGGGA 1199 28 100.0 33 ............................ GGGCACCAGCTTCGGCCTCAACGAAGCCGCCAC 1260 28 100.0 33 ............................ GGTCTCCACGAAACAGGAAAACGCTACCAAGGA 1321 28 100.0 33 ............................ CCCATTTGAGGAATGCGTGGATCATGTCGAATG 1382 28 100.0 33 ............................ CGGGGTTCTTGTCGGTCTCTGCTGAGGCGGACG 1443 28 100.0 33 ............................ CTCGGCGGCCTGCAGCAAGTCAATCAGGCTGAG 1504 28 100.0 33 ............................ GGAGAGTCGCATGACCCCGATGACCGACGCGGA 1565 28 100.0 33 ............................ GAGGGCCCGCACTATTAGTGCGGGCCCTCTCGA 1626 28 100.0 33 ............................ CCCACCCGTTGTTCTTCAGGGTCTCGATCAGCT 1687 28 100.0 33 ............................ CCGTGCAAGCTTTTGGGGGTGGGAGCAAATGGG 1748 28 100.0 33 ............................ GTGATGGCCGAGACCACCGGACACGCCTACACC 1809 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 30 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : AGCCCCATCAATGAACCAGCAAGGGGAACCCCTACTGG # Right flank : CTCAGCTGCCACCGGCGGAAGAAATCCGCCAGCGCCCTCCCCGCCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-867 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRI01000157.1 Rothia kristinae strain SA14 contig_157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47 28 100.0 33 ............................ GTTCTGAAGGGGAGCGATGGAGAAGGTGTGGGA 108 28 100.0 33 ............................ CAAGCTCCTCGCGGGAGGGGATTCCGCGAAGGA 169 28 100.0 33 ............................ GCCATCCGCGGACGCGTCCACCAGGGTCCGGTC 230 28 100.0 33 ............................ GACGAGCGCAACACCCCCTAAAACCTCCACAGA 291 28 100.0 33 ............................ GCGTCCCACCCGTCGTACCCGAGGGGTACCCAG 352 28 100.0 33 ............................ GAACACACCGAATTGTTCGAGGGGATCGAATTC 413 28 100.0 33 ............................ GGGTCCCGGCTTGCGAGGACCGCGCCTCTTCGA 474 28 100.0 33 ............................ GAAGCACGCAAAAGATGGAACGCTGTGGAGCGG 535 28 100.0 33 ............................ GAGCTGTGCCGCTGCGTCTGCCGCCTGAGGCCG 596 28 100.0 33 ............................ GGTGTAGTGCCCGGTGACGGCCGGCTCCGGGTC 657 28 100.0 33 ............................ CCTCCAGCTCCCCGAAACCCCCATCCCACAACA 718 28 100.0 33 ............................ CCCCGACCCCTACGGCACCACGGACGGCACTGA 779 28 100.0 33 ............................ GCGGGGGCGGTCGGGTCATCCGGGTCCCCCGGA 840 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GCGGGGATGAGCCCTGGCAGAAGCTCTACGCCGATGCCCACGCAGGG # Right flank : CTGGCAGAAGCTCTACGCCGATGCCCACGCAGGGCCCTCCCCGCGCATGCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 946-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDRI01000154.1 Rothia kristinae strain SA14 contig_154, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 945 28 100.0 33 ............................ CGGACGAACGGCGGGCTTCCGGCAAGCGTTCCG 884 28 100.0 33 ............................ GAAGACCACCGTGTACATGCCCCTCACGCTGCA 823 28 100.0 33 ............................ CATGAGGGCGTCCTGTACAAAAGTCATGAAAAC 762 28 100.0 33 ............................ CACGCGCCGCGACCTGCGGGCCGTGTTCGGCTA 701 28 100.0 33 ............................ GCAGGCGCTGGCGCGTGTCGGGTTGCCGACCTC 640 28 100.0 33 ............................ CACCACGTGAGCGACGGCCAGAGAACCCCCTCG 579 28 100.0 33 ............................ CTGTTCCATGGACTCCCCCAGCTCGATGCGCAG 518 28 100.0 33 ............................ CCCGGCGGCGGGGGTGTCGTCGGGGAGGGTGAA 457 28 100.0 34 ............................ GCTGCCCCAGCGCAAGCTGTTCCGCCGCCGCTTC 395 28 100.0 33 ............................ GACCGTCCGCTCCGCAACTTGACGGACCCTGCC 334 28 100.0 33 ............................ GCGCAGATGCGGCTGCACTTCCCAGGACCACTC 273 28 100.0 33 ............................ GCCCTTCGTGGACGCCGCGAGGGTCAGGTACGC 212 28 100.0 33 ............................ GCAACGAGCGTCGGCGGGAAGGTCGGGGAGGAA 151 28 100.0 33 ............................ CGCGGCTGGGGATGTGCGGCTGGGGAAGAACCT 90 28 100.0 33 ............................ CGAGCGGCGGCTGAAAACGTCGAGAATGTTCAC 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 16 28 100.0 33 GCCCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCATGCGGGGATGAGCCGATGGGCCGCAGGGCGTCGGTGGGGTCGAACT # Right flank : CC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //