Array 1 1023585-1025015 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030288.1 Salmonella enterica subsp. enterica serovar Gaminara str. SA20063285 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1023585 29 100.0 32 ............................. CCCGGTTTTACCGCCAACACTCACTATATTGT 1023646 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 1023707 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 1023768 29 100.0 32 ............................. CGGCTCGACCGGGAGCTTGCCGGCATCGTGGA 1023829 29 100.0 32 ............................. CAATCATCTGATTTTTTATCATTGAGAGATAT 1023890 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 1023951 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 1024012 29 100.0 32 ............................. GCAATATGAATAACAACGTACCACTCATCGCA 1024073 29 100.0 32 ............................. GAGCACTTTTACTGTAGGACTTGTATGAATCT 1024134 29 100.0 32 ............................. CGGCCGTAGCGCCGCTCAGTCCGGGGGATGGT 1024195 29 96.6 32 ...........A................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 1024256 29 93.1 32 ..G.........T................ ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 1024317 29 96.6 32 ..G.......................... CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 1024378 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 1024439 29 96.6 32 ..G.......................... CGTTTTTTTTATTTGTACTATTGTCAGTACCC 1024500 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 1024561 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 1024622 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 1024683 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 1024744 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 1024805 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 1024866 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1024927 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 1024988 28 89.7 0 ..G....................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 96.9 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1032868-1034361 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030288.1 Salmonella enterica subsp. enterica serovar Gaminara str. SA20063285 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1032868 29 96.6 32 ............................T TACGGGTGGCATACGACAGCACAGCGCGTACC 1032929 29 100.0 32 ............................. CCCGTCCACTGCTGGATGAAATGATGGAATGT 1032990 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 1033051 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 1033112 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 1033173 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT 1033234 29 100.0 32 ............................. TACTGACACCTCAACCTTTTATTTATAAGCCA 1033295 29 100.0 32 ............................. GCCGGGGTTTCCCGGAGGCATTCTGATGAAAG 1033356 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 1033417 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 1033478 29 100.0 32 ............................. AAAACCCAGGAACGGCACCAAAATTTACACAT 1033539 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 1033600 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 1033661 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 1033722 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 1033783 29 100.0 32 ............................. GAGCATACGGAAATTAAAGGGGTTAACGATCA 1033844 29 100.0 32 ............................. CGCGCAACATTCATTACTGCCCACTATTCAGA 1033905 29 100.0 32 ............................. AACGCGCCGCCTTAGAAAAACAGCGAGGGGAT 1033966 29 100.0 32 ............................. CGTCCTGTACGTGGTAGCGATAATCGTAATAA 1034027 29 100.0 32 ............................. ACGCTGAAAAACGATATTTCGCTGACCTATGC 1034088 29 100.0 32 ............................. GCTGATACGCAGACGATCACAAACTATATGGG 1034149 29 93.1 32 ...........................TT TAATCATTTTGTTTAAATCCCGGATCACCTCC 1034210 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 1034271 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 1034332 29 96.6 0 ............T................ | A [1034359] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTGGTTTGTCATGAATGGTGTTGATGCTGAGGGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAAGGGTATTCATGGAAATGGATGTAGATAGAGAAGCTACAAAGATTTTGGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTCTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTC # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //