Array 1 618206-619942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWR010000001.1 Escherichia coli strain 222B057 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 618206 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 618267 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 618328 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 618389 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 618450 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 618511 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 618572 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 618633 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 618694 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 618755 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 618816 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 618877 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 618938 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 618999 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 619060 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 619121 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 619182 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 619243 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 619304 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 619365 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 619426 29 100.0 32 ............................. AGCGTTAATCAGCGCGTCTATCGCGTCACTTT 619487 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 619548 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 619609 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 619670 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 619731 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 619792 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 619853 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 619914 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 635444-636144 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVWR010000001.1 Escherichia coli strain 222B057 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 635444 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 635505 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 635566 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 635627 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 635688 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 635749 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 635810 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 635871 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 635932 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 635994 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 636055 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 636116 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //