Array 1 125137-124376 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTON01000010.1 Cronobacter sakazakii strain MOD1_16MP002185 16MP2185_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125136 29 100.0 32 ............................. ACATACTATGAGAGCGCAGCGGGCGAGCGTAT 125075 29 100.0 32 ............................. AGGGGATGAATCACGCGTACCCGTGCCGTGTA 125014 29 100.0 32 ............................. CTTTCGCTTCAACAGTCACTGAGCCGTCAGTG 124953 29 100.0 32 ............................. TTTGTATATTCCACATCTCTTGGCGAGAAGAC 124892 29 100.0 32 ............................. TCTATTGAGCGCCCCTTGCGGGGCGCGCTCCT 124831 29 100.0 32 ............................. ATCACGCCCGGCCAGCGTGCGTGGGTGAAATA 124770 29 100.0 32 ............................. CCTGTATCGGAAATAACAACGATTTTGTCGTA 124709 29 100.0 32 ............................. GCAATCTGCAATAAAGTTCACTGGCTGTGCGC 124648 29 100.0 32 ............................. ATGACGTGTTTATGCTGGAGTTTGAGAAGCCA 124587 29 100.0 32 ............................. CAGCTAACGCAGGCGCGTGCGCGTCAAAACGT 124526 29 100.0 32 ............................. CCGAACTTTGTCGCGGTATTCGCGGGTTGTGC 124465 29 96.6 32 ....C........................ GCGGTGCCGCATGAGCAAAGAAGTCGAAAAGC 124404 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTTGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATAAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCGGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCGCGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 151930-151350 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTON01000010.1 Cronobacter sakazakii strain MOD1_16MP002185 16MP2185_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 151929 29 100.0 32 ............................. CCAGCCAGCCCCAATGTGTCGATAAAAAGTGA 151868 29 100.0 33 ............................. CACACGGCGGCACAGACGCACTGAGCAACCTGC 151806 29 100.0 32 ............................. CGGGTGTGCCTTTTGGATGTAATTTCCACGAC 151745 29 100.0 33 ............................. CTCCGCAAACTGAAACGCGACCGTGAAGTGGCG 151683 29 100.0 32 ............................. CCAGATAACGTTAGAGATGGTGCGCTAATGCA 151622 29 96.6 31 ............................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 151562 29 96.6 32 .C........................... AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 151501 29 93.1 32 .C..........T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 151440 29 93.1 32 .C.................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 151379 29 79.3 0 .C...........C...A..A....C..T | T [151352] ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : CCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 465698-466687 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTON01000007.1 Cronobacter sakazakii strain MOD1_16MP002185 16MP2185_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 465698 28 100.0 32 ............................ ACATTCTCCGCCGCCAGCGCGTCGCACTGCTT 465758 28 100.0 32 ............................ AAAGGCGAGCTAAATAAAGCACTGGCTCAATG 465818 28 100.0 33 ............................ CTGTTGTGCCACTACCAGCGAACGGATCTAACA 465879 28 100.0 33 ............................ TCATTAACACTTTCGTTCAGATGGGGGTTGAAT 465940 28 100.0 32 ............................ AAATGCCTCGATGCTGGCGGCAATTTCCTCTG 466000 28 100.0 32 ............................ ATGTCTGGCGGCGGCAGGCGCCCAGATTCTTC 466060 28 100.0 32 ............................ AGCAACACCAGCCCCGCGACGCGCTCCTGATC 466120 28 100.0 32 ............................ GTTACGACGCCGATCACGTCGAGTTCGTTTAG 466180 28 100.0 32 ............................ AGGATATCGGGCTAACCGTCGCTATCAAATCC 466240 28 100.0 32 ............................ GCAGCGGCTCCACCGAATGAACCGATTGATGC 466300 28 100.0 32 ............................ AGGGCCGGAACTGCCAGCTATGTTGACGGCGG 466360 28 100.0 32 ............................ ACAAGTGCCGGATACAGAGCCACGTAATGACG 466420 28 100.0 32 ............................ TTTAGCAAACGCCAGCAGCACGGCGAGCTGTC 466480 28 100.0 32 ............................ CGTCTTCGTAAATGCCAAATTGTCCGCCATTG 466540 28 100.0 32 ............................ AGCGGGTCGTTGGTGTGTTGCTGATTGATCAG 466600 28 96.4 32 ...........G................ GATTATTCACGAGCGGGGCGCTCTCACCTGGC 466660 28 96.4 0 A........................... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTATAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCATGGGGAAATTATCTATAAAATTTATGGTTTCTGCTGTAAGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCAGTGCTAATTAGCCGATATAACGGCGATAACACGTAAGAACCACATTAACTACAGACATTTGCAGGCTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAATAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAATTGACATTTAGTGTCATTTATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGACCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 475787-477495 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTON01000007.1 Cronobacter sakazakii strain MOD1_16MP002185 16MP2185_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 475787 28 100.0 32 ............................ TGCGCGTTTTCCGTTTCGATAACGGCTATTGA 475847 28 100.0 32 ............................ CCACCGAGGCCGCGCGTGCAGCCGCACCGGCA 475907 28 100.0 32 ............................ CGGAATAAAACCGAAGCAGACCATCACGTCAG 475967 28 100.0 32 ............................ GCTGATTCGCTGCCTGCTCAAAAATAGTCCGC 476027 28 100.0 32 ............................ ATCCCTGGCGAATTTTTTCATCCATCCATGAC 476087 28 100.0 32 ............................ ACGCTGGGAGAATGTGAAATGAAACGCGCGCC 476147 28 100.0 32 ............................ AACTAGGCAGGATCACCATGAAAGAGCTGCCT 476207 28 100.0 32 ............................ GCTGCACGACGCAGGAAAGCTTCCATGCCCGT 476267 28 100.0 33 ............................ GTCCCTCGCGGCCGCGCAGGAGCTGATGCCCGG 476328 28 100.0 32 ............................ AGTACGTAGCGGATAAATACCAGGTGCCTCCC 476388 28 100.0 32 ............................ ATACCCCGAACTTCTCAATCAGAGGAATGAGC 476448 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 476508 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 476568 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 476628 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 476688 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 476748 28 100.0 32 ............................ TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 476808 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 476868 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 476928 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 476988 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 477048 28 100.0 32 ............................ TCCGGCGTTCGGTTTGCGGCGGTATCGTCCCA 477108 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 477168 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 477228 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 477288 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 477348 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 477408 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 477467 27 92.9 0 ........................-..T | T,G [477487,477490] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCACTACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAATCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //