Array 1 11037-9666 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRWJ01000007.1 Escherichia coli strain 3_206_1 NODE_7_length_188664_cov_22.203674, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11036 29 100.0 32 ............................. ACATTGACTGCCCGTGGCGTCCCCGCGACCTT 10975 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 10914 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 10853 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 10792 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 10731 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 10670 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 10609 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATGAGGATAT 10548 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 10487 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 10426 29 96.6 32 .....T....................... GTATTGCAGAGCCTGATGGGGCATAAGTCGAT 10365 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 10304 29 100.0 32 ............................. GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 10243 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 10182 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 10121 29 96.6 32 ............................A CGCCGAGGGATTTTAAATCAGGTGTTTAAAGC 10060 29 100.0 32 ............................. AGCTTTATTGTTTTCAGGGAAAATAACGCGGC 9999 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 9938 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 9877 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 9816 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 9755 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 9694 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16870-17507 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRWJ01000009.1 Escherichia coli strain 3_206_1 NODE_9_length_146327_cov_19.113010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16870 29 100.0 32 ............................. CCGAATAGACAATGACCGCAAAGTGTCTATCG 16931 29 100.0 32 ............................. CTTTCCTACTGAATCCGCGTCGGTTGCCTCTG 16992 29 100.0 32 ............................. AGCCAGACACATTGCTTTATCGCGCCACGCTG 17053 29 100.0 32 ............................. GCGAGTAAGAGTACTGAGTATTTTAATCTCAT 17114 29 100.0 32 ............................. GCCATAGACTTTATTAACTTCATTGGGGGTTA 17175 29 100.0 32 ............................. CGTATCACAACCGGCCTCAGTACGTATCAGAA 17236 29 100.0 32 ............................. AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC 17297 29 96.6 32 ..........................C.. CAGGGAAACCGTTCGTACTTATCGACCTCAAC 17358 29 96.6 32 ..........................C.. AAGGGGACGGCTACGGGACGCCGCCTATTGAC 17419 29 93.1 32 ............T.............C.. GACGCACTGGATGCGATGATGGACATCACTTG 17480 28 72.4 0 .A.........C..T..-..T.G..C..C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.2 32 GTGTTCCCCGCGCCAGCGGGGATAAATCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGATCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACTGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCATCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAATCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //