Array 1 2969685-2968935 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016868.1 Legionella pneumophila subsp. pneumophila strain FFI102 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2969684 28 100.0 32 ............................ AGTACCACGGCACAAACACCGCCTGAAAGTTG 2969624 28 100.0 32 ............................ TACTACGTCCTTAGCTCTTAAGTCTTTTGTGC 2969564 28 100.0 32 ............................ TCTTGCGGCGCGTCTTTGTCTTCCATTAATTC 2969504 28 100.0 33 ............................ CAACAGACACGACAGGGTAGGGTTGCCCACAAA 2969443 28 100.0 32 ............................ GCCATCATGATTACTAAAGTCGATTGTGACCC 2969383 28 100.0 32 ............................ CAAAGTGTACGGAGATAGACCGCAAGACGACA 2969323 28 100.0 32 ............................ AATATAAAGCATCGGGAAAATGTAGACAAAAT 2969263 28 100.0 32 ............................ AAATGCACGGCGCAAAAGTCAGAAAACAGCCT 2969203 28 100.0 32 ............................ AGACAGAAATCCGGCTGGGCTAGAAATGATGA 2969143 28 100.0 32 ............................ TCTTGCCTGCTCTTAACTACAACTCCAGACCA 2969083 28 100.0 32 ............................ AAACAACCACACCTCCCTTTTTAGTTAATCTA 2969023 28 100.0 33 ............................ GATTCGATACATTTTTTAACTCGTCGCCCCAGT 2968962 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCAGCTTAGAAATTACAAAGCCTGCTGTATGCGTCTTTTAATAAGTTCACTGCCGCACAGGCAGCTTAGAAATTGATGTTCGTGCGCCCTATTCGCAGTTATTAGTTCACTGCCGCACAGGCAGCTTAGAAATTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAA # Right flank : TTATTATGTTAAAGGTATTGGCACGCTACGTAGCAAGGTCAGGCCTTGGTACGACCTTGTTTTGATTAGGAAAGTCTAATTATGACTATAATCTCCATTTCTCTTTATGGAGTATAGCAACCGTTAGTCAAATCTATACATAACCTAAACACATAAAAATAAACTCCCTAATTCCATGGAAATGAGTGTAATTGGATCGCAGTCAAAATAAATTGTGAAGTATGATTACTGAGAAAATTAAATTTAGTTGATGAGTATCTATTGGATCATGAGAATAGTCTAATGATGTGCGTTAATTATGCATATATGCTAAAAATTACTACCTGATAAGCTAGACAGTGTCGTCAAATTAACTTCCCCATAGTTCAATACACCTGATTTGTACTGCAGCAAGAAAAGAAGAGGTGTTTTTTGCATATCTTGTGGCAATCCCCTCCAACGTTTGAGATGGGGGAAGGCATTCTCCACCAGATGACGAAGTTTATAGATCGCTTTATCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2973261-2970051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016868.1 Legionella pneumophila subsp. pneumophila strain FFI102 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2973260 28 100.0 32 ............................ TTTTAAAAAACTTTAAGTTCTTTTCTGAAACA 2973200 28 100.0 32 ............................ CGATGAATCAACTATCAATAGATGGCGTTTAC 2973140 28 100.0 32 ............................ AATAAACAAAATTTGGAGTTAAATGTGAATGA 2973080 28 100.0 32 ............................ TTCAGCACATCATATGCGCAGTTAATCAACTT 2973020 28 100.0 32 ............................ ATACCGACACATTTTAATGGGATGGGGTGTCT 2972960 28 100.0 32 ............................ ACTTAATATTACCGAGCTAACATCAGCTAAAA 2972900 28 100.0 32 ............................ TATCGCAAGGCGTGTTCTTTGTATCATCCAGA 2972840 28 100.0 32 ............................ TGAAAAAACATTACACAATGATTCTACTATAC 2972780 28 100.0 32 ............................ ATTACACATATGACACTTAATCATTATCAATC 2972720 28 100.0 32 ............................ ATCCTAAGCACAAGCTCGCGCACTGTAGCCGT 2972660 28 100.0 32 ............................ TGTATCCACTGGAGACTCTCTTCTAATTCTTA 2972600 28 100.0 32 ............................ TGCTGAATCAAATTGACGCCTATAAGTTAAAT 2972540 28 100.0 32 ............................ TCTTTAACTTCTCTAATTATAGTACTGTTATC 2972480 28 100.0 32 ............................ AGCAAAAAAACGAATCGTCGTCAAGCGCAAGT 2972420 28 100.0 32 ............................ ATCTGCTTCATAAATTAAAAATGGAGAACTAG 2972360 28 100.0 33 ............................ CACCATTAACAGTTCCTGCGAGTACCGGCACCA 2972299 28 100.0 32 ............................ ATAACAGCGCAAGAGATTAAGGGATAGATAAA 2972239 28 100.0 32 ............................ TTCTCAACACAGTCTTTTTTGCCATCTCTTCA 2972179 28 100.0 32 ............................ TATACCGACTGCGCTTCCGGTGGTTCTTTGTG 2972119 28 100.0 32 ............................ AAAAGCCAACCGAGACAGCCAAAAAGAGCTTA 2972059 28 100.0 32 ............................ ATTGTGCCCAAGCCAAGGTTGGTTCTTGCGTC 2971999 28 100.0 32 ............................ ATAGTGAAAGTAACATAACCACGAGCAAAAAG 2971939 28 100.0 32 ............................ TGATTGGTTTCTTTTTCTTGACTGTTCTTTGA 2971879 28 100.0 32 ............................ TCTGATAGCGCAACGGCACTGGCCACCCAGCA 2971819 28 100.0 32 ............................ AGACAAGACTGGAACAATATCTCCAGCCTGTA 2971759 28 100.0 32 ............................ ATGAGCCAGTCGTATTTCATCTTGTTTTAGTA 2971699 28 100.0 32 ............................ AGGCAGTCGGAGAGCAGGAAAACACGGAAATC 2971639 28 100.0 32 ............................ GCTTGCTGTTGCTTTGCTTGTGCGTATTGCAC 2971579 28 100.0 32 ............................ ATTTGAAAAATCTATCCCTAAATCTTATGTAC 2971519 28 100.0 32 ............................ TCTTTGAAATGACAAAAAGGTATTATGAGTAC 2971459 28 100.0 32 ............................ ACAAGAAAGCGTGGACTTAATAGAGTTACTAG 2971399 28 100.0 32 ............................ TTCCCACGATGCCAGCGAGCAAGAAACAGAGG 2971339 28 100.0 32 ............................ GTCCATCCTTGCGTTTCCTTCCTTGTCGTATG 2971279 28 100.0 32 ............................ ATTTCGCCTTCAACGTCATGCGATAAATTTTT 2971219 28 100.0 32 ............................ GCTTGAACTTCTGCGACTGCTCTATCGGATTG 2971159 28 100.0 32 ............................ TTTGGCTTCCAATGGCGTTGTATTAACAAAAA 2971099 28 100.0 32 ............................ AGTCGCAACATTCCCGATTGACAAGTAAAGAC 2971039 28 100.0 32 ............................ ATATTCTGTTTGACCAAAGCAATCATTTGAAT 2970979 28 100.0 32 ............................ TACAAGTCAAAATTTTCTATTTCTTTGACAGC 2970919 28 100.0 32 ............................ ATAGATGTTACGTTAGACCAAAGTCATTTGGG 2970859 28 100.0 32 ............................ TTGCAGCGAAGGAGAAGTGCCATAATGTACAA 2970799 28 100.0 32 ............................ TTCACAACGCCTGGGTTAGTGCTAGGAGCAGA 2970739 28 100.0 32 ............................ TTCGCGTCTTTAATCTGTATATTCGGGTGTTA 2970679 28 100.0 33 ............................ AATAAGGTCGAACTGCTACACTAAGTTTACACC 2970618 28 100.0 32 ............................ ACTACATTCTTTAATACTTGTGCCATTTCTTA 2970558 28 100.0 32 ............................ AAATAACCGGATTGAACCTTCCCGAATAACAC 2970498 28 100.0 32 ............................ TAATGCAATTATCATGAATAATACTATGCACT 2970438 28 100.0 32 ............................ TCCTGATTATGTTTTATCCAAATGTAAATTAT 2970378 28 100.0 32 ............................ ATTACGACAACATAGAAGGCATAACCACAAGG 2970318 28 100.0 32 ............................ TGTGCAGCTATTGGAGGCTTAGGGGCTAAGTT 2970258 28 100.0 32 ............................ GCTGCTTATATTGGCGGCGACCTTTAAGATTT 2970198 28 100.0 32 ............................ TTACAAAGCCTGCTGTATGCGTCTTTTAATAA 2970138 28 100.0 32 ............................ TTGATGTTCGTGCGCCCTATTCGCAGTTATTA 2970078 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 54 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACACCTTGACAGAGGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAGGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAATGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAAGTCCTGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAAAACAAGGTAAATTCCTTGAATTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : TTCAGAAGATTTGCCTTCATCGAATTCTGGAAGTTGTCAAATTGATGCAAAATGAAGCGGAATTAACAAAACAGCTATACCGTTACGCAGCAAACCGAACTCAGTATGGCAAATTTATTCGTGAGCGAGAAGCTATAGATAAGGCCAATATATTTTTAAATCATGGCAATTACCTTGCCTATGGTTTAGCGGCAACAACGCTGTGGGTTCTTGGGATTCCTCACGGCTTTGCTGTTATGCACGGCAAGACACGTCGCGGTGCATTGGTATTTGATGTAGCGGATTTAATCAAGGACGCCCTTATTCTGCCTTGGGCATTTATCTGCGCCAAGGAAAATAGTAGCGAACAAGAGTTTCGCCAGCTAAGTTCACTGCCGCACAGGCAGCTTAGAAAAGTACCACGGCACAAACACCGCCTGAAAGTTGGTTCACTGCCGCACAGGCAGCTTAGAAATACTACGTCCTTAGCTCTTAAGTCTTTTGTGCGTTCACTGCCGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //