Array 1 2109-3133 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNH01000045.1 Nonomuraea cavernae strain CGMCC 4.7368 sequence45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2109 30 100.0 34 .............................. ACGCCGTCGGGGAGTTGGACTTTGTAGCCGGGGC 2173 30 100.0 35 .............................. ACGACGAGCTCACCCGACACCCGCTCGGTCGCGTT 2238 30 100.0 37 .............................. CGGTGCCGCCACATCCGCTTGGCCTCCGTGGTGGCGG 2305 30 100.0 38 .............................. AGATCCACCCAGCGGGCACCGCACGCCTCACCACGCCG 2373 30 100.0 38 .............................. ATCAGCGCGGCCACCACCACGGCGTACCCGGCTGAGGT 2441 30 100.0 33 .............................. ATGTGACCGGCACCAGACCGGCCTCTCGCACCT 2504 30 100.0 37 .............................. CTGTTCACCTCGTTTGCCAGCTCCAAGAGGTACGCGG 2571 30 100.0 34 .............................. GCGCGTGGCTCCCGCGCGCTGGTGACGGGCCGAC 2635 30 100.0 35 .............................. GCCACATCGCCCACGGACCTCCGCCGGGCTCGGCG 2700 30 100.0 37 .............................. GACGCGCTTCGGGGTGTCAGCCACAGGTCAGTCCTCC 2767 30 100.0 35 .............................. CCGGGCGACGATGCTGGCGCGTCACCATGCGGCCA 2832 30 100.0 37 .............................. AAAATCGACGTGGTGCCCGCCGTGACGACCGGGTCGC 2899 30 100.0 37 .............................. ATCGCCGCCATCAGGTCCACTCCACCTGGAGCACATG 2966 30 100.0 37 .............................. GCGGAGGACATCAGTCGGCCGTACGGCGTGAGGTCCA 3033 30 100.0 41 .............................. CGGTCGAGCTTGCGGCGCCCCTCGATCTTTGAGCCCATCGG 3104 30 93.3 0 ..........T..............A.... | ========== ====== ====== ====== ============================== ========================================= ================== 16 30 99.6 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CGTACTCGTGCGGCTGGTTGTGCTGCCGGGCGATGCGGGCCGTGAGCTGGTCGAACAGGTCATCGTCGATCAGGTCGGCGGCGAGGACGCCGCCGGGGTGCGGGCCGTCCGTCATGTTGCTCATGTACTTGACCGTCCATCCACATATTCGGCCCCTGGATTCCAGCACCGACTTTTCCGCCCCGGACCCTAGCAAGCACGACCACCTCACCACCACTGGAGGGCGGCTCCACCTGACTGCTCCACACGGACGACGGCCCGCACAGCTTGTTGAGATGCGCGTTCGCACAGGTCAGCGCCAAAGGGGCGGAGAAACCGCTGCACGGTGGCCGGGTAGGCGATTCGAGGGCTACCCTGCATCCAGGACGTCACGCGAAACCAGTTTACGATCATGGTTTTGCAGCGAACCTCCCGGGGATTCTGCACAACCGGAGGTTCACTGCAAAATCAAGGCTCCAGCCACCGCAGTCGTACGCATTGACCTGCGGCTTTACCATGGG # Right flank : CGCGTTGGACTCGGTCTGCTCAATGGCGGCAAAAAGGAGTCCCAACCGCCCCTCTGTGGCGACGCCGGTACCAGGTGGCCGAGCACCCAGTCTTGACCCTTGGGAGTTCCGGCAAATACCCTCAAGCTGGATGGAAACGGTGTTTCGCATTCCGGAACATTCCAGACGGCGGCGGAAGGAACCACGGTGCGGCCCCATGTCGAGCTGATCCAGGAAGACGACTACGTATGGCATGGCGCCGAGCTCGTGGCCGGTGAGGGGCGGGCGAGTGAGCGCCGGCTGTCCGTCGACGAGGAGGACGGCTCCTCGTCGTTGCGCGTCGACTTCCACACCGACTGGGGTCGTGGGCCGGGCATCCATCACGCCAACACCGAGTACTACGTGCTCGACGGGTCGATGACGTACGGCGGGCGCGAGATCGGCAAGGGCGGCTACGTCTACGCCCCGAAGGGGGTGCCCACTGACGCGATCACCTTCGCCGAGGGCACCAGGATCCTGCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 489-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNH01000010.1 Nonomuraea cavernae strain CGMCC 4.7368 sequence10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 488 30 100.0 35 .............................. GAGGTGCCGAACGTGACGTTCGTGCACACGCTGTG 423 30 100.0 34 .............................. ATCTGGACCTCCTGCCACGGCGTGGCCCTGCCCA 359 30 100.0 37 .............................. TAGAAGACTGCCGCGCCTACGCGCGGTTTGCTCCCCC 292 30 100.0 37 .............................. GTGTCGAGCCCTGCCAGGTTGAGGGACAGGATCGGGA 225 30 100.0 38 .............................. GAATAGATCGTGTCCTCATGGCCACGGACCACGATCGT 157 30 100.0 40 .............................. CGCATGAGCGCGTTCAGCGCGCCGACGACTTCCAGGCCAT 87 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 100.0 37 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : AACGTGGCGTATGACGAGCTGCTGTACCTCGAAGCCCTGCAGCTCACCCGTACCTGCTTGGAGGGGACGCCGTACAAGCCCTTCAAGATCTGGTGGTGAGGTCACGTGTACGTGGTCGTGGTCTACGACACCCTGGCCAAGCGCAACGCCGCCATCCTGCGACTGTGCCGCCAGTACCTTCACCACGTGCAACGGAGCGTCTTCGAAGGCGCGCTGAGCCCTGCCCAGCTACGGCGGTTTCACCACGAGGTCGAGAGCGTGATCGACGCCGGCTACGACAGTGTGCTCGTCTTCACCTTCCCTCCCGGCACGACACCCGAACGCCAGGAATGGGGCATCGCCCAACCCGCTCCCAGCGATATCCTGTGACCGGCACCCAGCATCTTGATCATGAAATTTGCAGCAGACCTCCCGGGTTTTCAGTACAACCGGAGGTTCACTGCAAAAACCTCATCCGACGGCCCGAACATCACACTTCTGACCTGCGGCTTTACCGTGGG # Right flank : CATGTCGCCAATGATCTTCGCCAGCTTGGCGCGGGTGTCCTCATCGCCCCTACGAGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 9529-8838 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNH01000010.1 Nonomuraea cavernae strain CGMCC 4.7368 sequence10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 9528 30 100.0 34 .............................. ATCCATTTCGGCACGCGTCGGGCCATACCGTGAA 9464 30 100.0 35 .............................. AAGATCGTCATCGGCAACATGCTGATGGAAATCTG 9399 30 100.0 37 .............................. GTCGGCGTCGTACGGCCAGTCGGTGTCGAGCTCAGGC 9332 30 100.0 34 .............................. ATCCATTTCGGCACGCGTCGGGCCATACCGTGAA 9268 30 100.0 35 .............................. GCGAGCGCGGCCAAGTCTCCGGCGTCGACCGCGGT 9203 30 100.0 36 .............................. CGCTTCCACTTGCCTGCGACGAAGGCGTTGCGGGTC 9137 30 100.0 36 .............................. GCGGCGAGCTGGATCTGGCCGATGGTGTGCGGCATG 9071 30 100.0 37 .............................. ACTCCGAGATCACCCTCACCCTCTTGACCGGCTGCCC 9004 30 100.0 38 .............................. GCTGTGTACCGCACGACGCCCCGGTGTGTCACCTCGAC 8936 30 100.0 39 .............................. GCGCCAACTGCCTCGTGATGTACGCCCTGCTCCTGACGA 8867 30 93.3 0 ...............GT............. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 99.4 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : TGGATCTAGCTGCGACCCCTCGTAGGGGTGATGAGGACATGAACTGGTCGCCTTTTACACCGCCCGTCTCGAGTTGCGACCCCTCACAGGGGCGATGAGGACGCGTACGGATTCCTGCGCGGGATCTACCTCCAGATGTTGCGACCCCTCACAGGGGCGATGAGGACCGTCTCAAGGGGGGCGCCGGTCTCGGGGTCCATGCCAAGTTGCGACCCCTCACAGGGGCGATGAGGACTGGCGCATTTCCGTGATCTGCTGGTTCACGCTCGGTTGCGACCCCTCACAGGGGCGATGAGGACACCGCGCCGACGCCCACCGCCAAGAGCAGGGCTTCCGGTTGCGACCCCTCACAGGGGCGATGAGGACCCGCAAACGCTGGCCAGGTGGTTCACGTACAAGCAGCTAGTTGCGACCCCTCACAGGGGCGATGAGGACGGGCGACTGACCGCCCCTGCTCTCGCGTGGGCCGGGTTGCGACCCCTCACAGGGGCGATGAGGAC # Right flank : CCCTCGTAGGGGCGATGAGGACCCCACGGTAAAGCCGCAGGTCAAGCCGTACGAATCTGGTGGCTGGAGACTCGGTTTTGCAGTGAACCTCCGGTTGTGCAGAAACTCCGGGAGGTTCGCTGCAAAACCATGATCACCAAGGGCAGCGATGACGTCCTGGACGCAGGGTAGCCCGCGAATCGCCTTCACGGCCACCATCCGGCGGTTTCTCCGTCGCCTTGGCGTTGACCTGCACGGACACGCAGCCCAGCAAGCCGCTTGAGTCTTCGTCCATCTGTGTCGGGTGAAGGGCCGAACCGGCGGGAGGAAGCAGTGAGGTTGCGGATCGAGGTCACCACGGCGGCGACCGAACTCGCGTGGGCGAAGGTGCTGGCACCAGGCCGGTCGTTGGCGTACGACCTGCTGGCGCACACGGCACCCGAGCTTGGACGGGAGTTGCATCATCGGGGTACGGGACCGCACGGCATGGTGCCGCTGGGGCATGGAGCACCGGTGTTCCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 28091-25881 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNH01000010.1 Nonomuraea cavernae strain CGMCC 4.7368 sequence10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 28090 30 100.0 37 .............................. TACAGGTAGGCGACGCCGATGCCGCGCGGGATGCCGG 28023 30 100.0 38 .............................. CCGTGGTGGACGCGGTAGCCCAGGTACGACGGGTGCAG 27955 30 100.0 34 .............................. CCGGGCGGTTTGAGCTTGGGCAGCTTGCCGTCCA 27891 30 100.0 33 .............................. CTGCTGCCGTGGCTGCTGGACGACCTCGGCGGC 27828 30 100.0 35 .............................. CGCTCGCCGAGCGGGCCTCCATGCGGCGAGCCCAC 27763 30 100.0 35 .............................. CTGGCGCGGCGGGCGAGGGTGCGTTGGGTTCCGTA 27698 30 100.0 38 .............................. CTGTCGTGGAGGCGGTAGGTGAAGGCGATCATGGGGGG 27630 30 100.0 36 .............................. CGTCATCACCAGGCGGGCAGGATGACCGCGACCGAG 27564 30 100.0 35 .............................. ACCGGAATCACAACGTCGAACGGGACCACCAGGAT 27499 30 100.0 38 .............................. CGGCGGCCGGCCCCCCTTGCGGGGGCCGGCCGTTTTGC 27431 30 100.0 36 .............................. ACGAGCTTCCGCCCGCCCTTGCGGTAGCGGTCCACG 27365 30 100.0 37 .............................. ATCAGCCGCAAAACCGCATCGGCACGCGTGTGCATGC 27298 30 100.0 36 .............................. CGCGCCCTGGTCCGTCATCCAGGAAGTCTCACTCAT 27232 30 100.0 36 .............................. CGGCGCCCAAACTGCGGGCGCCGCGCAAGCCCCTCG 27166 30 100.0 39 .............................. CGGATGACACAGCCTCGCCACGATCCCGGCTATTCCGAC 27097 30 100.0 38 .............................. ACGCGGTCACGGTGACCCTGCACGCCGATGACGTGGCG 27029 30 100.0 36 .............................. ACGACGACACCCAGGTACGCAATGACGTCACGGTGT 26963 30 100.0 36 .............................. ATCCACCTCGCGCCGCACGCCTCACCACGCCGCAGA 26897 30 100.0 36 .............................. ACGAAGCGCGCCCCCTACTTGAGCACGCAGATCTGA 26831 30 100.0 34 .............................. ACCACCTCGACACCCTCATCGAGGGCAGCGTCTC 26767 30 100.0 35 .............................. CTCACGTGACGCTGGATGGACATCGGCGCTATGAG 26702 30 100.0 35 .............................. CTCACGTGACGCTGGATGGACATCGGCGCTATGCG 26637 30 100.0 36 .............................. ACGCCGAGTGTGAGCCGTCCCCCGGGACGTTCTGGA 26571 30 100.0 37 .............................. TCCCACCGGTCGCGGAGGGTGTCGAACTCGTCGTCCG 26504 30 100.0 36 .............................. CGGAACGTGGCGCCGCACCCGCGATCACAAGTCATC 26438 30 100.0 35 .............................. ACGGACCAGATGACCGCTTCCATGGGCTTATACAT 26373 30 100.0 35 .............................. GCCGCGAGCAGGCCCACGTCGGGGCCTGCTGACGA 26308 30 100.0 38 .............................. CGGGGTCCCGCACGCCTTGCACTCCTGGCGCCGCCAGA 26240 30 100.0 35 .............................. AAGCTCATGACCCTCCCGTCCGTACCATCGTGGGT 26175 30 100.0 33 .............................. CTCCACGAGCGGCTGCCGGTGATGAGGATGCGG 26112 30 100.0 37 .............................. CTGCCGTTCAGGTGCTCGGCGATCCTCTCCGGGATGA 26045 29 93.3 38 ...C....-..................... GCGTATGAGGCCGCCTACGACATGGCCATGACGGGGCG 25978 30 90.0 35 ...C.....................AA... TCGGGGCTGTCGCCGTGGCTCACCTTGACGTAGAG 25913 30 80.0 0 ...C.T..T........C......TA.... | CC,C [25896,25899] ========== ====== ====== ====== ============================== ======================================= ================== 34 30 98.9 36 GTCTTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CTGCGCCCAGTCCAGGTGCGCCCGTACGCGGTCGCGGATCGCCTCGGCCCCGGCCGCCGAGATGACCCTCACGTCCTACGGCGCGCGCGTGGCGGCCTCGCGGGTGCGAGTGGCGGTGGCGCAACGGCAGGCGGTGCTACTACTGCCGTCACCACGGTGAGTGGCGGCGTCAGTGGTGCAACGACCGCGACGGCCGCGGCAACGACAACATGAACCGGAACTGACCTCATCCGGCCGGACGGTCCCGCGATGACGGTCGCCCCGCGAGGCATCTCCTCGCGGGGCGACCTGCCCCCTCGCGTCGCCCGCACCCCGCTTTCGAGCAGGATCGGCCAGCCCTCGTGACGCATTCAGCGGTAGGCTACGGGTGATCCGATCAGCTTGTTGATCATGGATTTTGCAGCGAACCTCCGGGGTCTTCCGCACAACCGAAGGTTCACTGCAAAACGACCCTTGACCGGCCTCACCGTTGGGCGTGTGACCTGCGCCTTTACTCTGGG # Right flank : AATCCGGATCGCTCTGCGGGGACCGACCGTGCGGTCCCCGCAGAGCGTGATGGTTACTGCGAGCGATGGGGAGTCGTACGGCACTGGGAAGCGACCCAGTCCAGGTCCGCGAGGGCGACCAGGTGGATGAGGTGTCGGGCGAAGCGGTCGGCGGCCGTGGGGGTGATCCCGTATTCGTTCGTGATCCAGTGGACGAGCTCGGCGCCGTTCGGGGGCGCGTCAGCGCAGATCCGGGCAAGCAACGGCCGGTAGCGTGCCGTCGCGGTGCGCACGCCGGCATCGCCTGCCAGCAGCTGACCCACCGTACGCCGTGCCGCATCCTTCTCTTCCTGGTCAAGGAGCAGTTCCTCCGGAGACTGCGCCAGTGAAGTCGATGCGGGCGGGAGCTCCTGTCCGAGGTACCCCGTCACGTTGGCCCGGTAGAAGGCAGGGCGGAGTGTACGGAGACCGTCCAGGGCTTCGCGCAGGATGCGCCGTGCCGGAAGCAGGTCCACGCCTAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 23466-20022 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNH01000036.1 Nonomuraea cavernae strain CGMCC 4.7368 sequence36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23465 29 100.0 32 ............................. ATGCCCGGGTCATCTGGCCCCGGATAGCTCAG 23404 29 100.0 32 ............................. GTCAACGTCTGGCGGCGCTAGCCGTGCAGCGC 23343 29 100.0 32 ............................. GTCGTGCTCGCCCGGACCTTGCGCCTGGTGGC 23282 29 100.0 32 ............................. TCACGGCCGGCTTCCAGCCGGGAGACGAGGCT 23221 29 100.0 32 ............................. TTCGCCTTCAAGGTCACCAAACTGGAGAAGCG 23160 29 100.0 32 ............................. ATCACCACCACGCGCGAGATGCTGCAACGGCA 23099 29 100.0 32 ............................. ACGCCCCGGTCTGCGGGGATGACGAGCTTGCC 23038 29 100.0 32 ............................. CTCGGCGGCCAGCTCGGCGTGCAGCTCATCTG 22977 29 100.0 32 ............................. ATGATCGGCCCGCTCTGTGCTACCCATATCCA 22916 29 100.0 32 ............................. GGTCAGCGGCTTGTCGGTCATGCGATCTCCCC 22855 29 100.0 32 ............................. GTGTCCAAGAGTGCGGGCCTGACGCAGAACGC 22794 29 100.0 32 ............................. CACCCCAGACGGCACCGGCCATGCGCTGGATA 22733 29 100.0 32 ............................. TCGAACCACCTGCTGCACGAGTGGCGGCAGTG 22672 29 100.0 31 ............................. TCCACCGTGGCCGCCGACGCCATCCGCCACG 22612 29 100.0 32 ............................. GCGGCGCGGCGTCGCCGGCCGACCGGCCCGGC 22551 29 100.0 32 ............................. GTCCGCCCGGCCCTCCCGGAGCCACCAGAGAG 22490 29 100.0 32 ............................. ACGCGGGTGGCGGTCCGGAAGTCCGCGTCGCA 22429 29 96.6 31 ............................A AGAGCTGGGGCTGGAACGGAGGCGGCTCGCG 22369 29 100.0 32 ............................. AGGCGATCGACAATTTCGTCAGGCTGAACTCG 22308 29 100.0 32 ............................. GTGACACTCACCGTTCCCGTCGAGGTTCAGAC 22247 29 100.0 32 ............................. CTGTCGCCGATGGCCGAGGGCAGGCCCATCGG 22186 29 96.6 32 ............................T GTAGCTCAGCAGGGAGAGCACCCGGTTTGGGA 22125 29 100.0 32 ............................. CTCCTCAATCCGATGCTGGACAAGGTCGGCTC 22064 29 100.0 32 ............................. GTGAACAGGCTTTCGCTTTCGCCCCAGAACTT 22003 29 96.6 32 ..A.......................... CTGATCGTCCGCGTGGCCACCAGCGGCCACGG 21942 29 100.0 32 ............................. ACTGCGTCGCCTGGACCGATGCCGACAACACG 21881 29 100.0 32 ............................. GACATGAAGCTGACGCCGCTACCCTCGCTGGC 21820 29 100.0 32 ............................. GTCCGCGCGGTAATTCGTATGGTGGGCATACG 21759 29 100.0 32 ............................. GCTCCATTCAGTGCACCAGGTGCGGGCAGGTG 21698 29 100.0 32 ............................. TCGTCCGGCAAGGGCGGCACGGGCGGCAGCCA 21637 29 100.0 32 ............................. CTGTACGTCGTCGCCATGAGCGCGATTAAAAC 21576 29 100.0 32 ............................. GGCCACGTCCCCGCGAGCCGCAGGCCGGCCCC 21515 29 100.0 32 ............................. GCGATCAGCACGGCGGCCATGTGGCTGTGGCA 21454 29 100.0 32 ............................. CCTCCCCCTTCGGGGGGAGAGTCGCGTGGAGA 21393 29 100.0 32 ............................. CCGGCGTGCTAGCGCCTGGCGCTCTCGGTATG 21332 29 100.0 32 ............................. TACCCCTTGAGCAGCTCTGGACTGATGTGGGC 21271 29 100.0 32 ............................. CCGACCAGACCGTGACCTGTGTCGTCTACATC 21210 29 96.6 32 ............................T GCGAACCGGCGTATTGCCGACGCACAAAAGGC 21149 29 100.0 32 ............................. GATTATTGATCAATGACTCATGTTTCCAGCGT 21088 29 100.0 32 ............................. TGGTTTCGAACGGGCCGAGCACGAGGTTCTGG 21027 29 100.0 32 ............................. CATCAGACCGCCCTCGTCCTGGCCTTGCGCCC 20966 29 100.0 33 ............................. CCGGCCGCGGCCGTCGAGGTCATCGCCCCTGGA 20904 29 100.0 32 ............................. TGGGCTGGAGTCGGTGGGGAGCGTGGAAGGGT 20843 29 100.0 32 ............................. CGCCACAGGACGCCCTCCCTATCTCAAGATGA 20782 29 100.0 32 ............................. ATGTTCGACGTCGAGGGCCGTGAATACGAGGC 20721 29 100.0 32 ............................. CGCGCCCGGGGCTGACCCGGTGGGCCGCGCAC 20660 29 100.0 32 ............................. GTCGTAGGCGCACTCGGATCCTGGGTCGTAGG 20599 29 100.0 32 ............................. GACTTCCATTGGACGTCAATGGGGGTAGTGTT 20538 29 100.0 32 ............................. CCGTTCGGCTACGAGCAGGACGGCGTCACCCT 20477 29 100.0 32 ............................. TGGGTGCACGAGATGCGCGCCAGGCTCAAGGC 20416 29 100.0 32 ............................. AGGGCGGGCCCGTCCAGGCCCGCCCGGACGAG 20355 29 100.0 32 ............................. CACGACCACACGCTGCTCACCCTCGTGGGCCG 20294 29 100.0 32 ............................. GCATCGACGCCCTCCAGGACCTGGCGGCCACC 20233 29 100.0 32 ............................. TCGACCCGGCCACCGTCGAGCAGCTCCACGAC 20172 29 96.6 32 ..................A.......... GCCACCGTGACCGCGCACCGCCACATCCTGCT 20111 29 96.6 32 ............................A TCGTCGCGCGAGCAGGTGGCCCAGTAGTTGGT 20050 29 72.4 0 ....................AAC.GGGGA | ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.2 32 CCCGTCCCCACGCCCGTGGGGGTGAACCG # Left flank : GCCGGCGTCAACTACAGCGACGACCTCGCCGGCGACATCGAGATCCCGTGGTAGTCCCGGTCACCTCGGGAGCCTCTTCGCGCCATCGACCAGGTGAGCCATGGCATCCATGATCGTCATATCGACCACCGCCGTTCCCGACCACGTCCGCGGTGCCCTGTCCCGCTGGCTCATCGAGCCCGCCCCCGGCCTCTACGTCGGCACCGTCTCCGCCCGTGTCCGGGACGAACTGTGGTCCGCCGTCAGCGGCTGCATCGCCGACGGCGCCGCCGTATGCCTCCACCCGACCGACAACGAACAAGGCTTCACCATCCGCACCGCAGGCGAACGCCGCCGCCACGTCGCCGACTTCGACGGCCTGCAGCTCATACGCTTTCTTCCCGAACCTCCATCCCAGCCGTGAGCTGCCGTCCTGCCTTGCATAAGGCCAGGTCACGGGCACGACAAATACCGACACCCGCAAAGGCCCAGGTCAGTAGAGTTTCCCCAGCTCAGTAAGC # Right flank : GGAGCCAGACCCCCACCTGCGCCGAAAGCACGTAGATCGCTTGGATGATGGTGTCCGATGTCAGAGCCGCTCCCCCACGCCCGAGGCGGCATGCTCCATCTGGACTTGAGGCCAGATATTTTCTCGGCCTGGCTATCTCCCGTGCCCCTGATCGCGGCTCCCACCTTCACGATCGAGCAATCGGGACTGCTCGGTGTGCTCCCGTTCGACCTGGTGCGCAATACGCGACTGGTCCGTACCTCGCTCGACAAGTTCGACGTACTCCACGCGCACAGCCTGTTCGATGTCGCGCCGCTCAGGGGACATTTCGGCACGTCGGACGACCTCCTGCTGAGCAACAGTGCGCTCCTGCTGAAGAAGTGCGCGATTCCTGCGAGCGGCCTCCGCTCTCTGCACGGCATCACTGATGTCCTGAGTACGGGCACCGCGTTGAGCGGTGGCGAAGTCGCGATTCAGGTCGTCATAGCGACGCCGCACCAGCGGCCACGCGGCCCTTGGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32500-33442 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMNH01000036.1 Nonomuraea cavernae strain CGMCC 4.7368 sequence36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32500 29 100.0 32 ............................. GACGCGCTCATAGAGGAATGGGGAGGCGAGGA 32561 29 100.0 32 ............................. AGGCCGAACGGGAGCGCATCCGCCAGCAGTAC 32622 29 100.0 32 ............................. TACCGTGATCACGAGGTGGAAGAGGCCACGCT 32683 29 100.0 32 ............................. GCATCTACGCCCGCGTCACCACCCTCAAATCC 32744 29 96.6 32 ............................A ATCCGGTTAGGCAAAGTCGTGCGATAAAGGTA 32805 29 96.6 32 ...C......................... TCTCCGTCACCTGGACACGCGGCGGCCAAGCT 32866 29 96.6 32 ...C......................... GTCTGCAGGACGCTGTCAGAGAACCCGCCGAC 32927 29 96.6 32 ...C......................... GTGCCGAAACTGATCAGGACCACCTCGCCGCC 32988 29 93.1 32 ...A......G.................. AAGCCAGCGGCGACGTACTGGGGCGGGCGCGA 33049 28 93.1 32 ...A.............-........... GTGCGGAGGTAGCGAGCGCGGACGGTGCAACC 33109 29 89.7 32 ...A..........T...A.......... GTCGCCATCAGAACAGCCGCTCGAACATGGGG 33170 29 93.1 32 ...A......................T.. AAGAAGGCCGGCAGCAGCGACACCGCCAAGAC 33231 29 96.6 32 ...C......................... CGCGACGACCTCATCGCTGCTCTCCGAGAGGA 33292 29 93.1 32 ...C....T.................... CAGAACAACGCGATGGGCGCTATCAACCGGTA 33353 29 89.7 32 .CC.........T................ TCGAAATCGGGCCCGGCCCCGACGATGTGGGC 33414 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.7 32 GTGGTCCCCACGCCCGTGGGGGTGAACCG # Left flank : CATGGAGACGCTTGAATTCATCGGGATTCATGGCTTGAAAGCACGGCATGCACTTGCCGATATCATGCAGGCCCGCCCAGAAGGCAACGAGGCGTCCAGCCTCTTCTACTCCCACCCCGAGTGCGGCGGCGATAAAACGCTTGACGTTCGGTGATAGATACTGCTTCCACAGAACGTCCACCATGGCGGCCGTGTCCAGCAAGTGGCAGATCAGCGGGTACGGGCGCTCCAGACCGTACGATTTGCCCCAAAGGAGTAAATCTACATCTATTTGTCCGACTTGATTTGCGTGCACCCATCTCCCTGTCGCTGGGTGTGAATGAAGCGCCACGAAGTGGTGCGCGAGGGAGCATATGGCGCATGGTGTTGATCCGCCAGGCTTCTGAGATTTCTTCCGTATGGAATTTTATTCCGTACGTGTTTGTGGAGCTTGATGATCACCGACAATAGCCGACATTTGCATCATCGCAGGTCGCGTCTATCCTGACTGCTCAGGAAGT # Right flank : GTGGGTACGCCTCACCGACCGAGGCCGCTTCTAGGGCGTGTTTCGAAAGTGGGGTTGAGCAATGGCGTGCGGGATTCTGGAGGGCCGTATGCTGCATTCGCATGAAGGATCTTGGTAGTCAGGTCGCGTACTGGGATAGCGTCGGCGTCACGAAGACATTCACCCACCCGGTGAACCCCGACTGGCTGGAAGGGGTGAGCCGGACCGCTCGGATTTTGGACTACGGCTGCGGGTACGGCCGTGTCATGGCTGAGCTGGGCGAACACGGCTTCACCGATGTGTCCGGCGTGGACCTGTCTCCCGGGCTGATCGCGCGGGGCCGCCAGTTGATGCCTGACCTGCGCTTCGCGGTCCTGAAGTCTCCGCCGGAACTGACTTACCCACCGGCGAGTTTCGACATGGTTCTGCTATTTGCGGTGCTGACGTGTGTCCCCGACGATGACGCCCAGCGGGCGTTGGTCGCCGAGCTGAGCCGTGTCCTGGCGCCCGGCGGGCTGCTC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : GTGCTCCCCACGCCCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //