Array 1 291224-292457 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURO01000004.1 Thermus sediminis strain L198 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 291224 36 100.0 41 .................................... CAAGATCCAGGTTCAGTTGCTCAAGGCCTTCTTGCATGAAG 291301 36 100.0 39 .................................... TCATAGATGCGGTAAACTACCGCGTCGTCTTCCTTATCG 291376 36 100.0 37 .................................... TTTTGTATTCGTCCAAGGCCTCCATGGCCCACCACGG 291449 36 100.0 40 .................................... TTGGCGAGTAGACCGAAGTCCCTATCCTGCAGGGCCTTTT 291525 36 100.0 42 .................................... CCAGTTTTTTCAGGACCTCGGAGTCGTTGCGGAGCATGTAGT 291603 36 100.0 39 .................................... TGTTTTACTTCGCCAACGATACCCTGCGGTTTTGGGTGG 291678 36 100.0 38 .................................... AGGTCACGGTTACCCGGTTGAAGGGGATCTCCACCCCA 291752 36 100.0 42 .................................... TCCCATCCCACTTCCACGCTACCTTTGACGAGGGGGTCTCCT 291830 36 100.0 37 .................................... TGATTGCGGTGGGCGACCCCAGGCAACAGATCTACGC 291903 36 100.0 40 .................................... CCACCACCGGCCTTTGGCCGGCGGGGAGGACGCCCCCCGT 291979 36 100.0 38 .................................... CCATTCTTCCTTGAGGAGGAGAGGGTGGATCACACCTC 292053 36 100.0 37 .................................... AGGACGTGCGGGCGGAGCTCCTCATGGAGGGCCAAGG 292126 36 100.0 37 .................................... CCTTCCCGCAACTCCACCCACTCCTTGGCGGACTCGT 292199 36 97.2 39 .................................G.. ATCACTATCTGGGCCAGGATGTGGGAGACGTTGGGGAGA 292274 36 97.2 37 .................................G.. TCGAAGTGGTCCCCCCGGCCCTTGCTCACCGTCACCA 292347 36 100.0 39 .................................... CTGAGGTCAAGCGGGGCCAGAGGAGATTCGGGGCCAGAT 292422 36 91.7 0 ..............................A.AT.. | ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 99.2 39 GTTGCAGAACCTTTAGCCCCGTAAGGGGATTGCAAC # Left flank : CCCGGCTCGCCGAGGAGGCCACCCACCCTCTGGGCTTCCGCAAGACCTACGGGGAGCTCATAGAGCTCCAGGCCCACCGCCTGAAGGCGGCCCTCCTGGGGCGGAGGCCGTACACCCCCTTCTACCTCTGGCGGTAGCGGGGCCTTTACTACACTTATCAGCAAAATTGCGATGCAAACGGCCTTCTTCGCGCTTTGAAAAACGAAGACCCTTTGGCAGGCCGCTTTTTCACCTACTTTTTGACCCCGTCTAAGGTTGCTATGTGTGCTATACTTTTCCTAACCCGGACCTCCGGGTGGGGACCTTGAAAGCCAGTTCTTCCCTTGGGGATGGGCAATATGCGTTTTCATCTTCTCATCGGCCCTTTCTCCTGTGTGATTTCATGGGCACAAACCCCCAAAAACCCCCGTTATTCGCCTTATGCATATTCCAAACTTCATCTTTCTCATAAACCCCCCCTCCGGCGGCCCCGTCCAGGACGGGATTCTTAGAGGGGTAGA # Right flank : CACGCGAACACTGACGCTTGCATCCCAGGAGTCAGGGCCTTGGGGTAAAATGCCCCTATGCCCAAGCGGCTCTACGCGGTGGCCTACGACGTGGCCGACGACACCCGGAGGGTTAAGCTGGCGAACCTCCTGAAGAGCTATGGGGAAAGGGTCCAGCTTTCCGTGTTTGAGTGCTACCTGGACGAGGAGCTCCTTCAGGACCTGAAGGCCCGGGCTCGGCGGGTGCTGGACCTGGGCCAAGACGCCCTCCGCCTCTACCCGGTGCGTGGGGAGGTGGAGGTGCTGGGCGGGGGGCCTCTTGGGGCCCAAGACCCCTCCTTCGTGGTGGTCTAGAATGGACCCATGCGGGTCCTCATCCTCACCGTGGGGTTTACAAAGGAGCCCCTCGAGGTCTCCATCGCCGAGCACGCCCCCGAGGGCGTGGTCTTCCTGGCCAGCCAGCAGAGCCAGACCACCGTGGCCGAGGTGCTGAAGACCTGGGAAGGGAGCTTCCGCCACCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAACCTTTAGCCCCGTAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 1195204-1194866 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURO01000004.1 Thermus sediminis strain L198 contig004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 1195203 38 97.4 38 ....................................A. TGGTCAAGGTTTTCCCCCGACCAGTAGAACTGATAGGT 1195127 38 100.0 38 ...................................... ATAGTAAACCTCGCTGCCCCAGGTAACCCTGAGGTAGA 1195051 38 100.0 37 ...................................... TGGGCGCAACCGCTTTTCAAAGGAGTAGACTAAACGG 1194976 38 100.0 35 ...................................... GTGGCCCAATCCAGGGCCGCCGCGGGGATGCCCAT 1194903 38 92.1 0 ................................AT...G | ========== ====== ====== ====== ====================================== ====================================== ================== 5 38 97.9 37 GTTGCAGAACCTTTAGCCCCGTAAGGGGATTGCGACTC # Left flank : CGGCGGCGTGGAGCTCCATGGGGCCATGCTACGCCCTGGCGGGGCCCCTTGGGAACGGCGCAGGCCTTAAGGCTTTTTTCCAGATTAGGACAGGCCATCCCGGGCCAAAGCCCTTTTTCGCCCATTAATTCCACCAAGAATAGTTACTATCAAACTTGGGGCTTGTACGATGCAACGGCACTTCTTTACGCTTCTATAGCGTATAGTGTCCTTCCCAGGCCCACTTCTGGAACACTTTTGAACCTGGTATACCGTTGCGGTGAAGTGCTATAATGCCCTTGTCCCGGGCAACCGGGAGGGGACCTTGAAAGCAGGTTTTTCCCGTCGGGGACGGCGATATTCGCTTATGCATGCCCCTCCGCCCTTTCTCCTCCAGCTTCCCATGGGGCCAAACCCCCCAAAACCCCCGTTTTCCCACCCATGCATATTCCAAACTTCATCTTTCTCACAAAACCCCCCTCCGGCGGCCCCGTCCAGGACGGGATTCTTAGAGGGGTAGA # Right flank : TCTTCCCCATCAAGCCAACCCCTGGCTTGGCCGTGGTGGGCCCTGGACCTTCCCTTCCTCGGCCTGTGGAGCCCGTTAGCGGCCACTAGGGCCGGCTCTAACAAGGAAGCGGCGGCTTAACCCCCTAAAGAGCGGCGGTATACTGGTCCCGAAAGGCCCATAGCGCTCTACCTCTCCCTTTTAGGCAACGACCCAGCCCCCGCGTATCTAGGGCTGAAGTTGACGGCGCGAAGGGCAGGAGGTGCGGCGAGGGCCCTCTTCTACACCCACCAACCTTGGACCGAGGGCTACGAGGCCAAGCGCCGCGCCCTCTTTGCCCTGTTGGAGGAAAAGGGCATCCCCTTTGAGGAGCGGCCCCTTTCCGAGGCGGCCGCGCCAGAGGGGGATATGGGCGAGGTCTGGGTCAACCTCACGGGCGGTCCCAAGCTCTGGGCGGCGCGCCTCCTTGGGCTTTGGCGGCGGCCCAGGGCGCGGGTCTTCCTCCTCGAGGCCCACCGCCC # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGAACCTTTAGCCCCGTAAGGGGATTGCGACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1269561-1270623 **** Predicted by CRISPRDetect 2.4 *** >NZ_QURO01000004.1 Thermus sediminis strain L198 contig004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1269561 29 100.0 32 ............................. GCGGGATCTTCATCTCCCGGGACGGTAATCTT 1269622 29 100.0 31 ............................. GAAACTTTCGCACGTGAAGGGGAGCGGTGGA 1269682 29 100.0 32 ............................. GCTTCCTGGGCCCGCAACCAACCATGCCCGAT 1269743 29 100.0 32 ............................. GGACCGCAAAACCGTCGTCATGCGGGTGCAGA 1269804 29 100.0 32 ............................. CCCGAGCCGGGGGGCTCGCCCCCGGCCGGTTC 1269865 29 100.0 32 ............................. TCCCCCCAAACCACGGGGTGGTTGGCCACCGT 1269926 29 100.0 32 ............................. TAAGGGCGGGCTAGGTAGCACAGGGGGGGGGC 1269987 29 100.0 33 ............................. TTTGCCCTATCGGCCGCTGTTGAAGTAGCCACC 1270049 29 100.0 31 ............................. TGGTTCCGGCCCGCAACGCCATGCGTCCGAA 1270109 29 100.0 32 ............................. GGGCCGCCGGGCCGTTCTACACGGTCCAAGAC 1270170 29 100.0 31 ............................. GGGGGCCCTTTGCATGGTTATGCGCCAGTTT 1270230 29 100.0 32 ............................. AGATGGCCACGCCAGAGATTGAAATCCCCGAG 1270291 29 100.0 31 ............................. CGCTCCCGGGACGCCGCTATGCGCTCGTCTT 1270351 29 100.0 32 ............................. GTCCTGGAAAAACTGGCGGCCATGGAGGAGGA 1270412 29 100.0 33 ............................. AGGGTGGAGGGGAGGGCCAGGCTCGTCCAAATC 1270474 29 100.0 31 ............................. ACGCGGATGTGGATTTGAAGGAGTGGGTTCA 1270534 29 100.0 32 ............................. TCCACGACCTCTTCAAACTCCTCAAGTGCCCC 1270595 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTAGTCCCCACACACGTGGGGATGGACCG # Left flank : GGACCCTAGCCGTCCTGGGAGGCTTTGGGACCTCGAGGGCGAGGTGGAAGGCGGGGTGGCCTATGGTGGTGATGGTCCTGGAGAAGGTGCCGAAGAGCCTGAGGGGTGACCTTACCCGGTTCCTGGTAGAGGTGGACACCGGGGTCTTCGTGGGCCGGGTAAGCGCTATGGTAAGGGACCTCCTCTGGGAGAAGGCGGTAGAGAAAGCGGAGGGGGGCCGGGTGGCCATGGCTTATCGGGCCAACAATGAGCAAGGCTTTGCCCTTCGGCTTCACGGCTACTCGGACCGCACTTTGCGGGACTTTGATGGTATAGTTTTGGTGAGCATTCGGAACGCCGAGGCGGCGCGGAAGGCGGCGAGGTTAACTAAACAGGTGCAACGTTACAAGTGCTGCGCCGCTGAGGAATCCGAAGGGGATCTTGAAAAAAAGAATCTGCAATAGCCCCTGGTAAGACACATAAAAGGGGGTGAAGGGCAGTTTTCGCCGTTCTGGTCAAGT # Right flank : AGGGAGCGGCTGACCCGGCCCCCCCAACGCCTCTTGTCGGCCTCAGTCGGGGGTTCGTCTGGCATCCCGAATCCGCCTTCCTGCCTGGCTTGCCCAACGGTGGCCCCCCTTTCGCGCCCTTTGACGGATCAGGGGCGTTGGGCGTCGTGTTTGCCGCCCCATAGGGACCTCTCCCCTTCGGGAGTGAGGAGGAAGGTGTTGCGGTCGTCCCTGAGCTGGCGCTTGAGGATCCTGAGGACCTTGGCCCTGGCCTCCTTGTCTAAAACGGGAAAGAGGAGCTCAAAGCGGTTTTGGAAGTTCCGGGGCATGAGGTCGGCGCTGGTCAGGTACACCGCCCACTTCCCCCTATGGCGGAAAGCGGCCACCCGGGCGTGCTCTAGGAAGCGGCCCACCAGGCTTCGCACGTGGAAGCGAGGGTGGAGAAGGGTGAGGGTGCTCCGCACCAGGAGGTCCACCCGGGCCCCTTTCTCCGCGGCTTGGACCAGGGCCTCGAGGATCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //