Array 1 171240-173343 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171240 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171301 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171362 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171423 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171484 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171545 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171606 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171667 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171728 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171789 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171850 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171911 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171972 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172033 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172094 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172155 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172216 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172277 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172338 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172399 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172460 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172521 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172583 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172644 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172705 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172766 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172827 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172889 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172950 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 173011 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173072 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173133 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173194 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173255 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173316 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189851-192686 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPQ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712436, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189851 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189912 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189973 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 190034 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190095 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190156 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190217 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190278 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190339 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190400 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190461 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190522 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190583 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190644 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190705 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190766 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190827 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190888 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190949 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 191010 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 191071 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 191132 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 191193 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191254 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191315 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191376 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 191437 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 191498 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 191559 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191620 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191681 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191742 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191803 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191864 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191925 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191986 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 192047 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 192108 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 192169 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 192230 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 192291 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 192352 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192413 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192474 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 192535 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 192596 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 192657 29 93.1 0 A...........T................ | A [192683] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //