Array 1 34947-35094 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOTJ01000002.1 Escherichia coli strain MOD1-EC6738 MOD1-EC6738_2_length_248138_cov_29.7819, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 34947 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 35007 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 35067 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTTGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTTGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTTCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGTAAGGTAAGGATAAAAAAAGGGTGGTAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGT # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGCGTTCGTGGTCTGTCCAACTGGCTGCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCACCCCCCCTGGAGTGCATTATGCGAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCACTCACTGCGTTCGTGGTCTGTCCAACTGGCTGCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCACCCCCCCTGGAGTGCATTATGCGAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGC # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10215-12626 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOTJ01000016.1 Escherichia coli strain MOD1-EC6738 MOD1-EC6738_16_length_85577_cov_32.4201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10215 29 100.0 32 ............................. CCTGTACTGCGTAAGCAGAGAAGTGATAAGAA 10276 29 100.0 32 ............................. TAGGGTCTTACTTCTTACGACCCACCCAACGA 10337 29 100.0 32 ............................. GGTACGCGCTTGCCTCTGAGTTTGCGAGCAAC 10398 29 100.0 32 ............................. CCCTAGCGGCTACTCAGCAGGCTTCCTGCCTC 10459 29 100.0 32 ............................. TAATAACTGTAGCGCTGAGATTGTTGTCAGAG 10520 29 100.0 32 ............................. CCGGTAAAACTTCTCTATTGGCTGCTATAGTA 10581 29 100.0 32 ............................. CGTACTGTTCCGCGTATCTACCAGGCAGCTAC 10642 29 100.0 33 ............................. GTACAGTAACAGTAGGTGAGGTAGGCAGTGTAC 10704 29 100.0 32 ............................. CAGATTCTACGCAGCCGTTACGGTGAGCAAGG 10765 29 100.0 32 ............................. GCTAACGTGAGAGGTATCAGTACGCCAAAGAA 10826 29 100.0 32 ............................. GTGAGTACATCGCTAGCGACTTCCAGAATCTC 10887 29 100.0 32 ............................. GTAAGCAGTGGGACGTTGCCGAGAAAATCGGT 10948 29 100.0 32 ............................. GACACGCGTTATCTGTGAGTCAATGGAGAACT 11009 29 100.0 32 ............................. TAGGGCTTACTTCTTACGACCAACCCAGCGAC 11070 29 100.0 32 ............................. CAGGTCTTAAGACTATGCAGCGTGCTGGTACT 11131 29 100.0 32 ............................. TGTTGAGGAGTGGAATCGCTGTGCGACAGACC 11192 29 100.0 32 ............................. CCACCAGTAATAATGGTTGGTTCAGAACTACC 11253 29 100.0 32 ............................. GTTAGGCGAGATGGATCGCGTAATGGTTAAAA 11314 29 100.0 32 ............................. GCTGAATGCCTCTCCTCTGCTTCTTGTTGAAT 11375 29 100.0 32 ............................. TACAAACGTGGCATATAATCCAATACCGTATT 11436 29 100.0 32 ............................. CAGTTCCCTAACCGCAAATATACATTATCGGG 11497 29 100.0 32 ............................. ACACTTGACGAGATGAACGCTTTTAAGAATTA 11558 29 100.0 32 ............................. TTGTGGATTTGTTTCTCTCATTTTCGGAAATA 11619 29 100.0 32 ............................. GCGGATTCGAATCTCAATGTGCCGGTAATCAT 11680 29 100.0 32 ............................. ACACCAATGGTGAATTTCACGCGGTAGTGAAT 11741 29 100.0 32 ............................. GCGTCTATCGCCAGCAACGATACTGATATTAA 11802 29 100.0 32 ............................. GATCAATGTCACATCACCATAGGAACGCGGGG 11863 29 100.0 32 ............................. GTTTTGTCGTATTTATTCACACTCGCTGATCG 11924 29 100.0 32 ............................. GAGAAAATCAGACTGTATGCGTTATCACACAA 11985 29 96.6 32 ............................T GGTATCCGGTAATAATTAAATACGCGTCAGAC 12046 29 100.0 32 ............................. GCAAAGCAAAACAGCGTACAACTTGACGCAAA 12107 29 100.0 33 ............................. GAAACGGCGGGCGTACTGGTTACGCTGACCCCG 12169 29 100.0 32 ............................. GCGGGACAGGATATGTTTTGTTGAACCGCCAC 12230 29 100.0 33 ............................. TTTAACGCCGGGAAGATTGATGAGGTTGTAAGT 12292 29 100.0 33 ............................. TTTAACGCCGGGAAGATTGATGAGGTTGTAAGT 12354 29 100.0 32 ............................. GTTCAGGCTTTCGTGTGTCCAGCCGGCTTCAG 12415 29 100.0 32 ............................. GCACCGGACACAACAACGGGCAGGGACCCGCC 12476 29 100.0 32 ............................. AAATCACCTTCCAGGGTGTTCATTTCCGGTTC 12537 29 96.6 32 ..............T.............. GGAACATTTGCAGGTGGCTTTTCATTCTGTGC 12598 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACGACCCGCGCCGGATATGCTACCGCCAGCCATCCCTGAACCTGAAACGCTGGGTGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTCCGTGCTGGCGTTTATGTCGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCTGCAAATCACCCAACTGGCAGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTAGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGATAATTAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GCCGCACGCCTTTCCATTTCCCGGACGAATGCAGTGTTCCCCGCGTGCGTATTTTCATGGAAGGAGATCACCCAATAACCCCCTGTGTCAGGATAGTTGTCAGCTTGTGAGTGAGGTTACTGGCCTAGAACGGAAATACCTGACGACAAGTGCTGCTCATCCGGAGAAGGTCATTCCTTCTGTAAGCAACAGCTCTGGCAGGGGGAACAGAACTGTAATGATTGTACATATAATTAGAGTTGACTACCTTCGCTGCATGAAAACTTTATTCAGGTTGACTGGGCTTTTGAATGAGAAAAGTCTCAGGGGGCAACCTTCATTAACCTGTTTTCGTAAAGCAAGTGGCATTTTACCGTTACCAGACCACGTCTTGGTATCGCCGTTCTCATCCTCAAAGATATATTTCGCTTTTCTCACACCGCCTTTGGGTTTTCGTTTGGTTTCCGTTGTCCCTGCAATAGCAGAAATTGGACCCTGCCATTCTTCCGGGTCAAGCCCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1328-2210 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOTJ01000013.1 Escherichia coli strain MOD1-EC6738 MOD1-EC6738_13_length_87768_cov_29.4503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1328 29 100.0 32 ............................. TACGCCCTGCTGCCACAGTAGCTTAACACCGT 1389 29 100.0 32 ............................. CCCCCAGGCAGTTCAGGTAAGAAGCCTTGCAA 1450 29 100.0 32 ............................. CATACGCAACTGCTGCCACTTCTGTTCTAGAG 1511 29 100.0 32 ............................. TCAGCCTGTACTACGAACTCAGGATTGTCCAA 1572 29 100.0 32 ............................. CCTACATGGTACAATCCGTCAGGTACACCACG 1633 29 100.0 32 ............................. AACACTGAACGAACTGGCCTACTCCGGTGAGA 1694 29 100.0 32 ............................. CATGAAGTCACCCGACACTTGATGCTGAAATC 1755 29 100.0 32 ............................. CTCGAGAGCCAGAGCAGTCTAGGCCGTAAGAC 1816 29 100.0 32 ............................. CAGATGGGCCTGAGGTTTGCTTGTGACCCCAA 1877 29 100.0 32 ............................. TAACGCGGTAGCAGGTGATTGGTGTCACTTGC 1938 29 100.0 32 ............................. CGGCGAAGTAATTTTTCGATCTGGTCAGCCAT 1999 29 96.6 32 ...........................C. TATTCGTAAGTTTTATGGGTGGATTTTAAGTG 2060 29 96.6 32 ...........................C. CGCGGGCCGTATGCCTTGCTTATGAGGGGTAA 2121 29 96.6 32 ...........................C. TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 2182 29 86.2 0 .A.C.......................CA | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACGG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACGG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 27759-28336 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOTJ01000013.1 Escherichia coli strain MOD1-EC6738 MOD1-EC6738_13_length_87768_cov_29.4503, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27759 29 100.0 32 ............................. TGTTGTTTTCCGCCTGGTATTCTGGCAGATCA 27820 29 100.0 32 ............................. CGCCAGTGGGGGAGCCGTGAGGACCTGACCTG 27881 29 100.0 32 ............................. GAGTTTGAAAAATCGTGTGCGGATGCGGCAGC 27942 29 100.0 32 ............................. CTCAAAGGCAAAAAATACGATCTCGCCGGTGT 28003 29 96.6 32 ............T................ GTTTGATCAATATCACGCTGACAGATTACGGC 28064 29 100.0 32 ............................. TGCGGAGCCCGCGGTTTTTTGTGTTGCCAATG 28125 29 96.6 32 ..........................A.. GAACCGGGCATATCGCAGTGTGGGCGCTGATT 28186 29 100.0 32 ............................. AGACACCAGAGGAAATAATAAAAATGATGGGG 28247 29 89.7 32 .G.........AT................ GGCGCACTGGATGCGATGATGGATATCACTTA 28308 28 75.9 0 ..A........C..T....A..-.C...C | T [28327] ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGGTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //