Array 1 99631-98750 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKSA01000003.1 Clostridium botulinum strain AM526 Cbot0076M3_AM526M3_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 99630 29 100.0 36 ............................. TTAACTCCTAAAGATAATCCATTTATATTCATATCT 99565 29 100.0 37 ............................. ACTACCTATTGCTATTTTAACGAATGTATGATTTCAT 99499 29 100.0 36 ............................. AAATTATGTTTATAAATGATAAAATAGAAAATAAAC 99434 29 100.0 36 ............................. TAGAAATAAGAAATAAGGGTGAACAAATAGTCTACG 99369 29 100.0 36 ............................. GGTTACTGCATATGCGAAGTGTTGCAGGTAAAAATT 99304 29 100.0 38 ............................. ACGTAAAACTCAAGCAGGGAAAGAAGTGGATAGTGATG 99237 29 100.0 37 ............................. AATTATTTTACTTTTGCTCCAGGAGATAAAATTGTAA 99171 29 100.0 37 ............................. ACAAATTTTATATCCTCTGTTTCCAAAGAACATTTAG 99105 29 100.0 37 ............................. TATCAAATCAGAATGGGAAGTAGCTTAGATGAAACAT 99039 29 100.0 37 ............................. TTGTATATCTTTTCGCTTAAAGCCAAAGTTTCTTTTA 98973 29 100.0 36 ............................. ATTTTAAGAGCATGACTAGTAAATATAAAAGTGTGC 98908 29 100.0 35 ............................. TACTTATATACAATTATTGATGTTTGCTGTACCAT 98844 29 100.0 37 ............................. GTTTATACAATATTACCTATACTTGCAGAAAACAAAA 98778 29 93.1 0 ...................GG........ | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.5 37 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAGGCTTGGTGGTGATAATTTATGTTTGTTATATTGACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTGGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGCCTTTCTGATGTTAATAAATTAATTGACAAGAAGTTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAGGATGTAGTTGGAATAGAAAAGAGTTTTGATGAATTATTTTTATAATTAGTTTTGCATTAAACCTAAATTTAAATTAATTAAGGTTAAACTATTGAAATTACTAGCTTTCTTGACAATAAAAAATAAATACTAAAAACGCTACTGAAGGTTTACTGCAAAATGTGGAAAATATGATAGATTAAGCATTGCTATAAATACAGTAATGGCGGTGGTTACAGGCTTTTTGAATTTTAGG # Right flank : CAATATGCTGTGAAGTCTTTTTCTGTTATACCAATATTCTATATACTCAAATATTGAGAACCTAGCGGTATCAAAATCATAATATGTAGCTAAATTTACTTCTTCCTTCTTTAGCGAAGCGAGAAAGGGTTCAATGTAGGCATTATCATAAGGACAATCCTTACCGCTGAAAAAGTGAATTATATTAATTCCTTTAAATATGTTTAACTGTTATCAAGCTTAATTTAAGAGTTTTGGAAAGATTTATGCTAGACTGCTGTAAAACTAATCAAGGTAGAAAGAAATCTGCCTTGATTTTATCTGTTTCTATAAGTTTGTACATTTATCCTATGAAGGATTTTAAAATTTATTATAGAATACTTAGTGTAGTTAATGAATGAAATTATACATAATCTAATAAATTTTTTCCTAAATAAAAAATGCTTATTTATTTAGGAAAATAAACAGGGGGTTATACTAATGAAGATAATAGTTATTGGACCAAGGGGAAAAATGGGAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5651-6007 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKSA01000006.1 Clostridium botulinum strain AM526 Cbot0076M3_AM526M3_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5651 29 100.0 36 ............................. TGACCAATAGTAGCACCGCTTAATCCATGCACATAC 5716 29 100.0 37 ............................. CTATTTAAATACTCTAGTTCCAACAAGGAATAGTCCT 5782 29 100.0 37 ............................. TTAGGATTTAAGAGTAGAGCTCAAAGGTATATATCCA 5848 29 100.0 37 ............................. CAAGTGGAAGTCCTTTCAATATTTTTTTAGTTGTTAA 5914 29 96.6 36 ................G............ TGAGTATTCCAGTTATAGAAATGGGACTATTATTAA 5979 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 37 GTTTTATCTTAACTATATGGAATGTAAAT # Left flank : GAAGGTCAAAGAGTTGAACAAGATACATTTGTTTGTAAGAGATGTTGGCATAAGATGAATGCTGATTACAATGCAGCTAGAAATATAGCTATGAGTTATAACTATATATCAAAAAAAGAAGAAAGTGAGTATTACAAAAATAACAAAAATATGGTATAATTACTTCAGTTAAGATAATAAGAACAGGGCGATTTAACGTCCTAAGGCTGAGGGATATTTCCACTCGGCAAGGGTTAATTTCGGATATTGTGTTACCATCCGAACATTCCATGATTAATGCGGTTATATACTCATATTTTAATTTTAATTAATAAATTTGCAGTGAAGCTATTTTGGACCTTATGTATTTGAAACCTTGAAATCAATGACATTTGAGTAAGTTCTATATATTACCCAAAAACACTACTGGAGATTTACTGCAGAATAAGGCAAATTAGTTATATGTTTATGCTGTGTAATTTAGCTTATACCAGTAGGTTAAAAGATTTATAAAATTAGGG # Right flank : TTGATGATGGATAATTATAGAATTAATATACTATTGCAGTAATAATATAACTATACTATAAGCAGTTGCAGCTGTACTTAGTATTTTTAATATAGATTTTGCATCTCTAAAAATTATATACAATACTATAAAAACAAATAAGAACATTTTTATTATATCTTTATTAATTAGCAAACTGTAGTTCCCCCTTTCTATTATTTGGGTTGATTTATTAAATTTTACTTAAATATGTCATAACAAACAACATTTTAGATGCTCTAGCTTGTCTGAGCTATTTTTATTTTCAATATAAAAAAGATTGTGCAAATTAAATTTAGATTAATAATAATTTTTTTAAACACGGTATATTAAAAGAATATATCGTGTTTTTTTATTTTGAGAAATATTACTATATGTCTAATATAAATAAAGCCAAAGTATTATTGTATTCACTAATCCTTTAAATTATATTAGTAAAAAGGAACAAATTAAGTATAAAGGAGGCGCCTTAAATGAATATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //