Array 1 285896-286640 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYNF01000001.1 Listeria monocytogenes strain CDPHFDLB-F1605001-003-2A1 F1605001-003-2A1_Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 285896 29 100.0 37 ............................. TCTAAAAATCAAAGGAGGATGTTAGAAATGAATGAAC 285962 29 100.0 35 ............................. TCTGCCGTTTTGATATCATTTTTTGCAATAACATC 286026 29 100.0 36 ............................. GAAGCCTTACTAGTTGAATTATTGCCGCCGGAAGAT 286091 29 100.0 36 ............................. ACGCCTATCTGTGCGTCTTCCCAAACCAAGTCGTGT 286156 29 100.0 36 ............................. AAAAGAGTTGATTGACCAAATCAGAAACACACTCAT 286221 29 100.0 35 ............................. AATTAACAGAAGCGGAAATTAAAGGCATGCAAAAA 286285 29 96.6 37 ................G............ TAGATAGTTTAGACTTTTCGACGTAGTACTTCCGCTA 286351 29 96.6 36 ................G............ GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT 286416 29 96.6 35 ................G............ TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 286480 29 93.1 37 A...............G............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 286546 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [286569] 286612 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 94.8 36 GTTTTAGTTACTTATTTTGAAATGTAAAT # Left flank : GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 302910-304436 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYNF01000001.1 Listeria monocytogenes strain CDPHFDLB-F1605001-003-2A1 F1605001-003-2A1_Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 302910 29 100.0 34 ............................. CGAGCAATAGACTCTCGAACATCAATACCATACA 302973 29 100.0 36 ............................. AGAAGTTTGCCCCCTGCGCCTAAGAGTTTTCCTAGC 303038 29 100.0 36 ............................. CAATTTGACGAAAGAAACAATGTGAAGTGGTATTCT 303103 29 100.0 36 ............................. CCTAAAGACTTACATCCACTTGTTTTCCAGAGTTAT 303168 29 100.0 39 ............................. TTGCATTAATACTCATTTCTAAGCTTCTAAGTTCATTCA 303236 29 100.0 36 ............................. CAAAATAAATAATATTGAATAAGCTGAAATATTTTT 303301 29 100.0 36 ............................. TTGACACATCAAATGTAAATCCGCTAAACAATTCTT 303366 29 100.0 37 ............................. TCCGACACCACCCAAAAAGCCAATGCAGTGCTTCAAT 303432 29 100.0 34 ............................. GAAGTAGATGTAATAATTTTCAAAGAAGCTTTGA 303495 29 100.0 36 ............................. ACATTTTGTACGCACCACGCTTGACGGTCTGAAACT 303560 29 100.0 35 ............................. AGCTAAACAAGTTCTTGACTGCTCTTCTTAATTCC 303624 29 100.0 37 ............................. GTTATATCTTCTATTTGCGTCGTTTTTCCGTCATAAA 303690 29 100.0 35 ............................. CGAGTTAGGGTTAGCTACTCCCGTTAGTCTTTTTA 303754 29 100.0 37 ............................. ATAATTCTGTGAACAAATACTCTTTTTCCTTTAATAG 303820 29 100.0 36 ............................. ATTTTCGATGGCGGGCATGAAACGACACTAGCTTTT 303885 29 100.0 37 ............................. CAATACCCGCTGGGTTTAGACCTCTAGCAGGTAATCA 303951 29 100.0 34 ............................. GATGGAAGTATTCGTGTGAGTGTTCTGGCATACG 304014 29 100.0 36 ............................. TCAGCTCCATCAATGCTTTTTGATAGCACTTCTAAA 304079 29 100.0 38 ............................. GTACTCCATCGGCAATGATAATCACATCCGAAGTACCG 304146 29 100.0 36 ............................. GAAAATAAAAGAGATCGAAAAACTAAACGAACAAGT 304211 29 100.0 37 ............................. AACCATCTGATGGATCAATGGGGAATGGAGTTTTTAC 304277 29 100.0 36 ............................. TTGTAGTCTGCTAGGTCATCAAACGAATCAATACCA 304342 29 100.0 36 ............................. AAGTTAGTTTCAAGGTGGATCGACTTCTTGAAATGG 304407 29 93.1 0 .......................A....C | C [304430] ========== ====== ====== ====== ============================= ======================================= ================== 24 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAATGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAATCCTGCTCCTGCGAAAAACAATCCCCACGCAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //