Array 1 30839-35440 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHQ01000016.1 Moraxella catarrhalis strain F23 B746ctg10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 30839 28 100.0 32 ............................ TATTCATCTCTTCAATCTCTTTTATTATCTTC 30899 28 100.0 33 ............................ AGCTAGGGCGGTGCGTTCGAAGTCCGCCATGAT 30960 28 100.0 32 ............................ TATATTACCAGCAGATGGGTAGTATTGAAGCT 31020 28 100.0 32 ............................ AAATTCGTACCAGAAACGAAAATAGATTCTGG 31080 28 100.0 32 ............................ ACACGGCTATCATGATAATAGCAACTTTCACA 31140 28 100.0 32 ............................ GCTAACTTCGTTGTCTACTTGTTGGATAGTAG 31200 28 100.0 32 ............................ ACTTTCAATGGGTCAATAGCGTTAACGCCTTT 31260 28 100.0 32 ............................ TATTGCTTCTCTAACGATTAACATTATTATTC 31320 28 100.0 32 ............................ TAGTATTGTTTTAACGAAAAGTTTACTATCTG 31380 28 100.0 32 ............................ TAGACGACCAAGTGAGTTTGATAGAACTTTTA 31440 28 100.0 32 ............................ AACATGCTTGATGAGATCTCGCTCAATCTCTA 31500 28 100.0 32 ............................ CTTATTCCACTGTTTTTGTTACCGTAAGCGTA 31560 28 96.4 32 G........................... AAGATAAAGAAAGAGCAATGAGCGAATGTTTG 31620 28 100.0 33 ............................ ATAATAATTACTGCGAACATGAGATAGTCTCCT 31681 28 100.0 31 ............................ TTTTAGTTCAGCATGGATAAGTTTACTCATG 31740 28 100.0 32 ............................ AAAAGACATAAGGTTGAATGATGAGTGATGAT 31800 28 100.0 32 ............................ ACATTACTTGCAGATGGGTAGTAGTCTAACTC 31860 28 100.0 31 ............................ AGGTATCAGCCCACCAATCGATATCTGAGCG 31919 28 96.4 33 .....T...................... ATAATTCCACCATTCGGTTTCTTTGTCTGAGTC 31980 28 100.0 32 ............................ TCTGGTTGGTATTTTACATCAAACCCTTTAAT 32040 28 100.0 32 ............................ TTTTAAACCTGCACAGAACAATGAAAGACCGA 32100 28 100.0 32 ............................ TGTCGCTCATTTGGCGGTGTCCACTCGCCCCG 32160 28 100.0 33 ............................ ATAAATTCACTGCACTATCTATCAAGTTTTGTA 32221 28 100.0 32 ............................ ATTCATTTCTTGTAAATCTAAAAATATTTTGA 32281 28 100.0 33 ............................ GTTACAGCAAGTTTGACAACATCAAACGGCTCA 32342 28 100.0 32 ............................ TACTTGTCTATCCAAAATCAGTTTATACGCTG 32402 28 100.0 32 ............................ CCAAGACCCCGCTATGCCGCCTCAGCAGTTTT 32462 28 100.0 30 ............................ ATCGTACTCCGACGTTCTACCAGGAATTAT 32520 28 100.0 30 ............................ TCTTTAAAGACTGCCCTTTTCACTTAACAG 32578 28 100.0 32 ............................ TTGTCTGCGTCTGGATGTCTATATTTGACTCT 32638 28 100.0 32 ............................ AGCATTTTCAGGCTTTGAAAAATATTCAAGAT 32698 28 100.0 34 ............................ CATTCTCTGTATTCGTTCATATCGCCCCCTTGAT 32760 28 100.0 32 ............................ TTAGGCAGTAAGATGTTACAGATAACATAAGC 32820 28 100.0 32 ............................ ATCTATATAATCTACAATGACTTTACCTGTGT 32880 28 100.0 31 ............................ AAGTATTCATCCAGGGTGTCTACATGATTTA 32939 28 100.0 32 ............................ GTGATATTAACGCTTTGCAAGCTGATAAAAAT 32999 28 100.0 32 ............................ AATTATCATCCAGAAAAGATCTTCTTTAGAAA 33059 28 100.0 31 ............................ AGATGACCAACCACCGCTTGCCAATTTCCAA 33118 28 100.0 32 ............................ GTTATCAACGACAGCATATTTTGGCGGTTGTA 33178 28 100.0 33 ............................ AGTCAAATTCACCACGCCAAACACCGCCATCAT 33239 28 100.0 32 ............................ ATTAACCCTAGCTCTATCGCCGTCAATTAGCA 33299 28 100.0 32 ............................ GTCATAATGTTTCATTACTGCAAGTACTAATC 33359 28 100.0 32 ............................ TTTTAGGCAAGGCGTGAGCCTTTTAGGCAAGG 33419 28 100.0 32 ............................ CATACTCGCTCATAAGCTTCAACCCCTGCTTA 33479 28 100.0 32 ............................ TGTAGTAGAAAGTTAACTACAGAACGCTAATT 33539 28 100.0 32 ............................ TAAACTCTACTACTCTGCTATCGTGATAATAG 33599 28 100.0 32 ............................ ACTTTCAAGCCTGCACAGAAAAGTGATAATCC 33659 28 100.0 31 ............................ TTTAGTGTTATGCTCATTTAATTCCTCAAAA 33718 28 100.0 33 ............................ GTCATACTCCCTTCTTTCCAACCAAGTATTGTC 33779 28 100.0 32 ............................ CATAACAACGGATAAAATAATCTTTGTTGTTT 33839 28 100.0 32 ............................ ATAGTCTCATATGATATTTCTTGTTTTAGTTC 33899 28 100.0 32 ............................ CCGTACTTCACAACGTATTCTTTTGCTAAAAC 33959 28 100.0 32 ............................ AGTGGAATAGCTAATGCTAAAGCGTGTTTAAC 34019 28 100.0 33 ............................ AATCTGTATAACCATACAAAGCTTGATTTTGCA 34080 28 100.0 32 ............................ AACATCCGCAAGGATTGGGCGGATTGCACAAA 34140 28 100.0 32 ............................ TTTTCATTTCATTGTCAAGAGTTTCTTCAACC 34200 28 100.0 32 ............................ TTGATCCCTAGAGATTTTGTGCATCTCCATTA 34260 28 100.0 33 ............................ AACATAACTAGTCTCCTTAAATTTCAATTAGTA 34321 28 100.0 32 ............................ TAGATACTGCATAGGATTAAATTGTTTCATGT 34381 28 100.0 32 ............................ TAAACACCTGATTCTAGAATTGTAAAGCCACC 34441 28 100.0 31 ............................ CTTGCAGGGGCTGAAAATGCTGATATATGTT 34500 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 34560 28 100.0 29 ............................ TTGACCCCGCCACTAGCCCCAGTTGTGAG 34617 28 100.0 32 ............................ ATGACAGAGAACGGTTAAGTACAACGGCAATC 34677 28 100.0 32 ............................ TTGATACACAAAACATGTCTATTGTACTTTCT 34737 28 100.0 32 ............................ TTGTATCTGTGTCAGATTTGAGTGCGTGGCTA 34797 28 100.0 32 ............................ TTTCGCAATAAGTTTGGCGAATATATCTCACT 34857 28 100.0 32 ............................ AGTATAGTGATTTTCGCCATTGACACACTGGA 34917 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 34993 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 35053 28 96.4 32 .............T.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 35113 28 96.4 32 .............T.............. AGCCTGAGCTTGTCGCTGATGTGCTTAATCAC 35173 28 96.4 32 .............T.............. GACGCAAAGATTGCAATCAGATAAAACAAAAA 35233 28 92.9 32 ...........TG............... TAATCTTGAACCTATTTCATAAATAAACGGCT 35293 28 100.0 33 ............................ AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 35354 28 96.4 31 .............T.............. CTTACAATTTTTTTGTCAAAATGCTGCATAA 35413 28 92.9 0 .............T....T......... | ========== ====== ====== ====== ============================ ================================================ ================== 77 28 99.5 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGGAAAATTACTGTGGTATTGGCGATCGGAATGTTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : ATTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //