Array 1 407561-407293 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSOH01000004.1 Pseudomonas aeruginosa strain JYH16 IPC1227_4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 407560 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 407500 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 407440 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 407380 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 407320 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCAGTACGCCAGCCGCCTGTTTCGGCAACGGCTCTGGCGCTATCGGATGCAGCAGAGCATGAGTCGCCGAGGGAATTGCTGGGATAACTCGGCGATGGAGCGCCTGTTCCGCAGTCTGAAGTCGGAGTGGGTCCCGTCAACGGGTTACCTGACGGCGCAGGAGGCCCAACGGGACATCAGTCATTACCTGATGCATCGCTACAACTGGATCAGGCCGCATCAATTCAACGACGGGTTACCACCTGCGGTGGCCGAAGAAAAACTCAACCCACTGTCCGGGATGGGTTGACCACTACAGTCCTCGGCCAACT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58285-59032 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSOH01000010.1 Pseudomonas aeruginosa strain JYH16 IPC1227_10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58285 28 100.0 32 ............................ AACCTGCTGACACGCCTGGGCGAGGACTTCGA 58345 28 100.0 32 ............................ AATATTCGAGCCGCCATCCTGCATCTCGAAGC 58405 28 100.0 32 ............................ ACCGGCAGGACGTGATCGAGGTCGGCGTGCTC 58465 28 100.0 32 ............................ AGATCGTGATGCCTCCTGCATGCGAGAAGGGC 58525 28 100.0 32 ............................ TGATACGCAGCTCAGGACGCAGGCCAAAAACA 58585 28 100.0 32 ............................ CTGGAGCGTGCCAAGACCCACCTTGGCATGGA 58645 28 100.0 32 ............................ TGGACCTGGGCAAGCTGATGAAGGGCCAACTG 58705 28 100.0 32 ............................ TGCCGCCGCTACGACTTCCAGACCATCACACC 58765 28 96.4 32 ............A............... TTGGGAAGTACTCAAGGATCTACGCCGCACTG 58825 28 100.0 32 ............................ ATCCTGAGGCTCAGTTGAGGTGATCCATGGCG 58885 28 100.0 32 ............................ GTCGAGCAGTTGATAGAGGAAATGCGCCGACA 58945 28 100.0 32 ............................ AGGACGGCGACTCGACCCTGGCGGTTCGGCTG 59005 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATTACGGCAGTGAACGTAGATCAGACCGAGGGGGCTGAAATTCATCATTTCTTAGCTGCCTATACGGCAGTGAACTAGATTCTGCTGTGATGATGCCGCCCCAGATCTTTCTTAGCTGCCTATACGGTAGTGAACGAGTATCGCCACCCCAATGGAGAGAGCCATACTTTCTTAGCTGCCTATACGGCAGTGAACCCGCTGGCCTTCTCATGCGCCAGGGACAGCAGTTTCTTAGCTGCCTATACGGCAGTGAACATCGAAGCCATGAAGAGCATGACGAACTCCCATTTCTTAGCTGCCTATACGGCAGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 60315-59207 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSOH01000010.1 Pseudomonas aeruginosa strain JYH16 IPC1227_10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60314 28 100.0 32 ............................ AGGTCAACAGGTGGCTGGTAGATCAGTTGCCC 60254 28 100.0 32 ............................ TTGATGCAATCCTCTGGAGGAGGCGGAGGCTC 60194 28 100.0 32 ............................ GTCACGCGGGTTCCCTGCTGCGGCTGATGCGG 60134 28 100.0 32 ............................ ATGGTACAATCATGGTGAAAAGGGAGTGTACC 60074 28 100.0 32 ............................ TTCAGCGTCGCGGCAACCATAACCAGGCTGTG 60014 28 100.0 32 ............................ ATCCCGACGACCTCCTCGCCGAGATCCAGGCG 59954 28 100.0 32 ............................ ACCCAGGTTGCTGAATACGTAGTCCTTGGCCT 59894 28 100.0 32 ............................ TGGAAGCTTGACCAGGCGGACTAACCCACCAC 59834 28 100.0 32 ............................ GAACATCTGCAGCAGCGCCCACAGCGTGCTGG 59774 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATACCTGATCAC 59714 28 100.0 32 ............................ TGACCCTTGGAAACGCCGTTCCAGGGCTTGAT 59654 28 100.0 32 ............................ ATGTCGCCGAGCTTGGTTCCCTTCGGCCAGCT 59594 28 100.0 32 ............................ CTAATCGAGTGACCAGTAATCGCGTTGAAGGC 59534 28 100.0 32 ............................ TGGGAGTTCGTCATGCTCTTCATGGCTTCGAT 59474 28 100.0 32 ............................ CTGCTGTCCCTGGCGCATGAGAAGGCCAGCGG 59414 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 59354 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 59294 28 100.0 32 ............................ TGATGAATTTCAGCCCCCTCGGTCTGATCTAC 59234 28 67.9 0 .............ATT..C....CCCCG | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : TTTTCGTCTGTATGAGGAGCGTGAGCTTCCAAGCGGGGCACATTGTCGTGGACGGGCGAGGCTGGCGGGCGGGGTAGGAACTTTATATTCGGATGTTTGGTAGTGGGATGGGGAGGGCGGTTCTGCCTAGACGGCAGCGAACCCGGCGGCTGTTGTGGCCGAGGTGGGTTCGAGTTTCTTAGCTGCCTACACGGCAGTGAACCAGCCGAACCGCCAGGGTCGAGTCGCCGTCCTTTTCTTAGCTGCCTACACGGCAGTGAACTGTCGGCGCATTTCCTCTATCAACTGCTCGACTTTCTTAGCTGCCTACACGGCAGTGAACCGCCATGGATCACCTCAACTGAGCCTCAGGATTTTCTTAGCTGCCTACACGGCAGTGAACCAGTGCGGCGTAGATCCTTGAGTACTTCCCAATTTCTTAGCTGCCTATACGGCAGTGAACGGTGTGATGGTCTGGAAGTCGTAGCGGCGGCATTTCTTAGCTGCCTACACGGCAGTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //