Array 1 27330-26774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYC010000021.1 Clostridium botulinum C strain IZSVe-TV_9877_1_12 NODE_21_length_37415_cov_25.116_ID_2725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 27329 29 100.0 36 ............................. GTTATTTAAGATACCTTTTACATACTCAATGTTTCT 27264 29 100.0 38 ............................. TCGAGACTGGAGTGGTAAAGTTGCTTTAGTAGATACTA 27197 29 100.0 37 ............................. AAATTAAATGTTGAAAATTCTTGGTTAACGGATTCAT 27131 29 100.0 36 ............................. TGAAAATTGATATTGAATATATAAAAGATAAAGTTA 27066 29 100.0 37 ............................. CCTAAAAAACAAAAACACCCTAGCCAATAGGCTTAGA 27000 29 100.0 38 ............................. AAAAGGTTAAAATCTGCACTTATAATTCTAATTGGTAC 26933 29 100.0 37 ............................. TATCCGAATTCAAAGTCGCTTTGTATTCTATCAGCCA 26867 29 100.0 36 ............................. TCTTTCAATATCTTCAACTATATTTGCAGTAGGATC 26802 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 99.6 37 GTTTTAGTTTAACTATGTGAAATGTAAAT # Left flank : TAATTATGAAGAAGGACAAAGAGAATCTCAAGCTGATTTTATATGCAAAAAATGTGGTTATAAAGTTAATGCTGATTATAATGCAGCTAGAAATATCGCTATGAGTAATAAATATATAACAAAAAAAGAAGAAAGTAAGTATTACAAAATTAAAGAAAGTATGGTATAATAAAACATAGTTAAACTAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGAAGTTTTTTCTACTCGGCAAGGGTTAATCTCGATTGTTGTGTTACCGATCGAGCGTTTCACAAAATGCGAGAGAAATCTCGCATTTTTAATTTTGCAGTAAGGCTAGTTTTTATATAAATATGCTATAACCATTGATATTGCTAGGCTACAATAGGTTTTATTAAAAAAGCAAAAAACATTACTGAAGGTTCACTGCAAAATAGTGTATTTAAGTGAAAGTGAGATTGCTTGTAAAGCTAGGAGTATCAATATATTTATAAATTTCAAAATTTAGG # Right flank : GAGCATAGCAATAAATTTTGTTTCATTTTGTTTGAGTAAGTTTTAGTAAAATACTATGAAGTGAAGGGATACGTATTATGAAATTTATCGAATCAATAGATCCTTTTTTGATGCAGTTGGTTATTGTTCCGCTAATAGTAATTGGATTAGGTGTTTTAGTAGCTTATAATATTAAAAATATATTAATTGGACCTTTAATAACATTGTTTTTAAATAGTTTATATGAAATTTGGTATATAAAACACTATTGTCCTGGATCAGAAATTAGTTTGAGTTCTTGGAATATTATTCTTCCAATGATTTCATTTACAATTTCTTTGATTGTAGTATTAATTAGAGAATAGGGTAATATTTAATAAAGATTATTTCTTAGGCTAGGTGAAATGTAAATAACCTGGATTTTCTTTAGTTGCAATAATATCAATACTAGGTTTTAGTTTAACTATGTGAAATAGAGAAGCAGAATATAAAAGCTGAAACTACAAAATATCCATAATGGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTAACTATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 35679-35152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYC010000021.1 Clostridium botulinum C strain IZSVe-TV_9877_1_12 NODE_21_length_37415_cov_25.116_ID_2725, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 35678 29 100.0 37 ............................. AATTGAAGATTTTATTCAAAGATTAACACAAATTCAT 35612 29 100.0 35 ............................. CATTAAATAGGACCTGTGAAAATAGAGGAGATCAT 35548 29 100.0 37 ............................. CTCTTTCCACTTATTTAAATTATTTAATTCCTTGCTT 35482 29 100.0 36 ............................. CGCAGCTATATTAAACAACTAATCGAAAAGGATATT 35417 29 100.0 36 ............................. CTAGCCTTCATTCTGTGCAGAGTTTATAAAACTAAT 35352 29 100.0 35 ............................. CGTAGAAATTGTATCTGCATAAGCAATATTATTAG 35288 29 100.0 13 ............................. CGAGCGGTAAACG Deletion [35247] 35246 29 93.1 35 .....C..........A............ TTCGAAATATCGGAATATGTCTAATATCTCGAACA 35180 29 72.4 0 .............T....T.TAA..C.TA | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 96.2 33 GTTGAGAATCAACAAAGGATATGTTTAAG # Left flank : AATATACTTAATAAAGATAAAGAATATGAGTTTACTGTTGAGGATGAAGTTATAGCATATGACCAGATTAAAAAACTTTATGAGGCTATGGATAAACTGGAACCATTGGAAAGGGAAATTATTAGCAGATACTATATTAATAATGAAAAATTTAAGGATATTGCAGAAGATAAAAAGCTTTTATATGATAGGACTATTTATTTGAGGAGGAGAGCCATTAGGAAACTTAGAGGGATCATGGAAAAAAAACAATAAATTTAAAATATTATCATATAAAAATTGAATAAATATAATCGTATGTGTTAAAAATATAAATAAAATTATTACCAACCATAAAGGTCGACTTAGCGTCCTAAAATTGAGTAGTACCAATAAGTCTAATAAGATTAGCATGGCAACTCTCAGTAAGCCTCAATTTGATTGGGAAGCTTTGTGCAGATGCTAGTAATAGCAAGGCGTACAATGATATATCCATATTTAAAAATGGCTTAGATACAGAG # Right flank : TAATAAATAAGTTTAAAATTAGTGTTTATTGGAAATATTATAAATATATATAATATTTTAAGTAAGGAAGATAAAACATGAATAAATGTATAAAAGTATCCATAAAGAATTGTAAGGAACTAGATTATAAAGTTATGAGTGAAAAATTAAGAAATATACAATACTTAACATGTAAAGCTAGTAATAAAGCCATGCAAATGTATTATATGTGGGAGAATCAGAAAATAGATATTAAGAATAAAACAGGAGAATATCCTAATGATAAAGAATTATTTGGAAAAACCTATAGAAATGTAGTTGAAGGTGAAATGAAAACTATAATGAATACCATAAATACATCTAATGTAGGTCAAACCAATGCAATTATAATGAAAAAGTGGAATACTGATAAAAAAGAAGTTCTATCATATCAAAAATCTTTACCTAATTTTAAATTAAATATGCCTATATACATAAAAAATAAAAGCTTTTCAATAGTAAAAGGTACAAGTGGATATGAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCAACAAAGGATATGTTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [91.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 43913-41986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYC010000015.1 Clostridium botulinum C strain IZSVe-TV_9877_1_12 NODE_15_length_58412_cov_28.2936_ID_2713, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 43912 30 100.0 35 .............................. AGGTAAAAAACACATCTTAAACCGTTGATATATAA 43847 30 100.0 35 .............................. TCCATATATCTCCTTCATTCATTTTTCCTATATCC 43782 30 100.0 34 .............................. TGTCTAGCGAAGTTTTATAATGCATGGTTTTTCC 43718 30 100.0 34 .............................. TCAAATCAAATCGATATTGTTTCTAAAGTATCAA 43654 30 100.0 34 .............................. TAAATCTTTACCCCACTGGAGCGTGCACCTATGT 43590 30 100.0 37 .............................. GAAGGAAATAAGATACAGGATTTTCCTTCACAAGGGG 43523 30 100.0 36 .............................. TTCAAACACTCCTTTAATTAGAAAAGGAGAAATAAT 43457 30 100.0 35 .............................. TTGTAAATGATGATGTATTATATTCAGAGATTACC 43392 30 100.0 35 .............................. GATATGGGAGTCGGAAAACACGCCCTTGTGATTGA 43327 30 100.0 34 .............................. TACTCTCTATTAATTCATCACTATGCTTTTTCAT 43263 30 100.0 37 .............................. TGTTGGCTATTTTGACAGAGCAGTTAAAAGTTCCGAA 43196 30 100.0 35 .............................. GTTATATATTTTATAATTTCTCTTTCTGCTTCTCC 43131 30 100.0 35 .............................. TAACGTAGATAAAGGTATGCCTGATGCACAATTTA 43066 30 100.0 36 .............................. TTCATAAAATCTTCATAAAAATGAACTAAAAACTGT 43000 30 100.0 36 .............................. TTTTCTAAGATTGATATTTGGCTGTTATTTTCCATA 42934 30 100.0 35 .............................. ATTTCTATAGATAAACTAGCTATATCTTTTTTAAG 42869 30 100.0 37 .............................. CAGAATTAAAAGGTGCGTATATTAAAGTAGGATTAAC 42802 30 100.0 35 .............................. TCTCCAAAAGTAGTGCTAGTTATTGGAACGTTCCC 42737 30 100.0 35 .............................. TTTTTGGTAGTTGTTCTTTCTTTACCTTTCCTTCT 42672 30 100.0 36 .............................. CTGTTTTTATGTCAATTCCCAATCTTTCTAGCACAA 42606 30 100.0 36 .............................. TTATAAGTAAAATTTTTATAAAAATTTAATATTTCT 42540 30 100.0 36 .............................. TTGTATAAATATATAGCTTTTTTCATTTTCAAGCAC 42474 30 100.0 34 .............................. TCTATAAAGTTATATTCTTTAGCTTTTTGAGCAT 42410 30 100.0 36 .............................. AAAAAAATGGACTGAACTTTGGAAAGACTGTTTAAA 42344 30 100.0 37 .............................. GCGCATATTCCTATTGTATTTGTATTATGTCCTTTGC 42277 30 100.0 35 .............................. AACTTATCCTTATCTTGTCCATAATCCATATCTAA 42212 30 100.0 37 .............................. AAAGGAGATTAATTTTTATGGATCTATTTGCATTAGA 42145 30 100.0 35 .............................. TTTTTATATTTGTTTCTAATAGCATCTGCTGCTAA 42080 30 100.0 35 .............................. AGTATTACATTAAAAGATACTACCGTTAGTTCTGC 42015 30 90.0 0 ....................C...C.T... | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 99.7 35 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTATTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTCAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATAAAAGTTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : AAAAATTAGTTAAATACTAATACAACAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGTGGAATCCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCAGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTCTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCCTCCTGTGGATAATATATCTACATTTGAATAAGGCAAAGCCTTTAGTAATATATTAAGATTGTTAGTTATTATAGTTAAATTTTTTCTATCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 102318-101956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYC010000005.1 Clostridium botulinum C strain IZSVe-TV_9877_1_12 NODE_5_length_197847_cov_13.2269_ID_2693, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 102317 29 100.0 38 ............................. TTTAGTAAATCTTTTAATAAAACTTGTCCTGAAGGTAA 102250 29 100.0 37 ............................. GCAATTTTTATAATTAATTGTTGTGTAGCTGGACTTA 102184 29 96.6 39 ................G............ TTGCATTTGAATTGCATTTAAATTATCTTGAGATTTTGT 102116 29 96.6 36 .........G................... ACCCAATATTCATATAGTAGGTTAAGGTCTTAAATT 102051 29 96.6 38 ................G............ AAAGTATAATAATATAAACTAGCACACGTAAATTGGTA 101984 29 89.7 0 .........G.............TA.... | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 96.6 38 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : TGGCTGGGATATTGAAGATTATTTAGAAGTTGGTAAGTGGGAATTAGTTTAGAATCTTAAAATATTAAGAATGTGCTTGATTAGGGGGATTAAGAATGGAAAAATATAAATATGTTATAAAAGTTGGATACAATAAGTATTTGCAGTTTATAGATGACATAGAAGATTATTGGCTAGTTAATAATAAGAAATTGGCTAAGGTATTAAGTGAAGAATGGTATGAGAAAAGAGTTGAGATATTAGATAAATTAATAGATTTAGGATTAACTATACCTCATTTTGAGAGTGCTTAAAGGTAAAAACAAATAGAGATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAAAGTGATTGTAAGGTAGTTATATCAATACGCTTAGCTATTTATTATAAAAAACGGCTCACTGCAAAAACACACTATTTATTTGAAGTTTTAATGGTCAAAATATGGGATTATATAGTATAATAGAGATATGCAAAGAAAAATAGA # Right flank : AGGATTAACTTTAAAAAGTTAGTCCTCTTTTTGAATAAAAAATCACAAATATTAATAACTCTGTGGTAATTAGTGAAGAATTATTATATAATAGCATTAAAAGGTAAATTTTATTTATAACTGATTGGAGATGAAAATATGGAGATATTACTCGCGATAATGGCATGTATAGTTGGATTGTTTATTTATATAATCGTTAAGGATGAAAAAAGAATCAATGCTGAAAAAAATGAATATGATATAAAAATAAATTGGCTTTGTGATTACATTGGAGGTATACCGTTATTTGATGAGAATAAAAATAATATAGGCAAACAAATGGATGTGCAAGTTAGGGGTAAAACTAATAGCTTATATATCAAAAGCTTATCTAACGCAAATGAAATAGATATATCTATTAATAATATAACAAATATGGAATCTAAAACTAAAGAGCAAATAATAAGTAAACAAGTAAGTCCATCATTGACTAAAATATTAACTTTTGGGGTATTTTCAAT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTAAACTATGTTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 176103-176785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYC010000005.1 Clostridium botulinum C strain IZSVe-TV_9877_1_12 NODE_5_length_197847_cov_13.2269_ID_2693, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 176103 29 100.0 37 ............................. CTTGAAATTATGTGCTAAAACAATGGGTAAAATGTTT 176169 29 100.0 36 ............................. TGTCTGAGGTTTTCTACGTAATCACGTAGCTGTTCT 176234 29 100.0 36 ............................. TCTTTAACTGTTACAGTCATGTCATTGTTATCTACA 176299 29 100.0 40 ............................. TACTTAAAATTAACCATTACAACATCTCTAGTAGTTTCAC 176368 29 100.0 35 ............................. GTTAACTCTGCTATTTCTCTATTTGTAAAGTTTAG 176432 29 100.0 36 ............................. TCTTTCATCTTTTTTAGCAATCCAGTGTGTTGCTTC 176497 29 100.0 36 ............................. TTTCTATATAGACTATTATATATTTTTACTTTATCT 176562 29 96.6 37 .........G................... CTCATTCAGTTCACCTCTTGTTATAATGTTAAACTTT 176628 29 96.6 35 .........G................... TCTTCTAACATTTTAATTGCTTCCCATGTTTTATA 176692 29 100.0 36 ............................. ACAGTAAACCCCTTTGGTACTTCTGTATTTTTATCT 176757 29 82.8 0 ...C...........CG...A.......T | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 97.8 36 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : CTAACTGATACTATGCCTAAGGTTGTTATATTAGGTGAATATAAGTGGGGAAATAATGTGTTCCAAGGATTAATAAATAAAGATGGAATAAATATAGATGGACTTAAAGAAGTAATAGAGGAATACGAAGATTTTAGAAATAGTAAGATTTGGATAGGGGTTAGTAGTAGAATATTAAATGAAAATTTTCAAGGATTAAAGGAAAAGCTTGAAGAGGAACTGCAAGATTATGATGATGTTGAAATAGGAAGTGTGAAGAGTGCTTTTGATGGATATTTAAAATATTTAGAAAAAACGATGTAATATTATAAATTTTGCAGTGAACCTCTAGTAATGTTTTGGGTTAATTTTACAAATAGTGTTGTAACATAGATATACCAATGGTTGTAGAGATTTACTATAAAAAATGGTTCACTGCAAAAACACACTATTTATTTGAATTTTTAATGGTCAAAGTATGGGATTATATAGTATAATAGAGATATGAAAAGAAAAATAGG # Right flank : TAGATAATAAAATAAATAATCGTATAAAAAGAAAGGAAATAAAATATGAATGACTTAAGTGATAAATTAAAGAAATATAAAGCAAAATCAGATGATACTACTATATGTAAACATAATAATGATTTGTTTGTAGCTTTAGAACAATTATTAAATATACATTATATATCTGACGAATTAAAATCTTCGCTAAGAAAATGTATAAGTTATCATGATGTTGGAAAAGTTGTTGATGATTTTCAAAATAACATAGAATGTAAACATAGAAAGATTAGACATGAAATATTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATCAAGATAGTTTAAATGAAGTAAAAAATAAATTAAATATAGAGACAGAAGATATAACAGAATATTTAAAGAAAATATGTAGAGGTAGCAGAGAAAACCATAAAAAATTACATGA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : GTATTAATTGAACTATATTAGTTATAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 179044-179732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYC010000005.1 Clostridium botulinum C strain IZSVe-TV_9877_1_12 NODE_5_length_197847_cov_13.2269_ID_2693, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 179044 29 100.0 35 ............................. ATGATGGAAGTAACTTAGATAGTTACGCGTCATAC 179108 29 100.0 38 ............................. TAAAATTCATATAAAACGCCTCCTTTATGCTACATTTA 179175 29 100.0 35 ............................. TCAGGAAACATCAAGTATGATAAATCTAAAAGTAG 179239 29 100.0 38 ............................. GGTATCCAGCTTTTTGTGCTTGTTTTCTAAAGTCTTTT 179306 29 100.0 38 ............................. TTAAAATGGAAAAGCCCAGAAGAACTTGAAAACAAAAT 179373 29 100.0 36 ............................. GCAGTAGAGAAACTATTTGGCGCCATTCTTATTCTT 179438 29 100.0 42 ............................. TATGTCTAAAGATTGAAGTTGTTCATTTATAGCATTTTCCTG 179509 29 100.0 35 ............................. GTAACCAGCAGGTGCATCACCTAACCAACCATTTA 179573 29 100.0 36 ............................. CTTGATACATGGTAGCTAAGTTATTCCAATAGTCTG 179638 29 96.6 37 ............................C AGTTACAAAATATGCAATTTTCATCGGTACTATTTCT 179704 29 89.7 0 .........G......G...........T | ========== ====== ====== ====== ============================= ========================================== ================== 11 29 98.8 37 GTATTAATTAAACTATATTAGTTATAAAG # Left flank : ATAAGTATAAATCACAAATACAATTTATAATTAATAGTATTAGAGTGGGATATTATAATAAAAATGCTTCTGAAGAAATGCTAAGCAATGATGATACAGTATCAGTATTGCCTACTAATTTATTAAGCGAATATGCTAAATTAAGAGAAGAAAAAAGATATATAGAAGCCAACGAATTATTTGTAAATGCTAAAAAATATATATCAAAATATAATAAAGAGTTTAAAATTTATATAACATATAGTGTATACGATTGTAGAGGATTAGTTTATGAAGAAATTGATATAAATAACCAAATAATTTAATATCTTATTTGCAGTGAACCTCCAGTAGTGTTTTTGGGTTAATTTTACAAATAGTGTTGTAACATAGATATACCAATATGTCTAGCTATTTATTATAAAAAATGGCTCACTGCAAAATTTAATGATTTTATACTAAAAATAAGATGAAAAATATGGAGTGATATAGTATAATAAAGATATGAAAAGAAAAATAGG # Right flank : TGAGTCATTAAAATCTATCTTTTATGATAATGGAAATTAAATTAAAGAATTTCAAAAATAACCGTTGACATAAATGGAAAACAGTAGTAGAATAATAAATGTGGAAAGAAAATATAAAGTTAGTATGGGTTGGAACATTTTGTTCAAGCCCTTTACATAAAAATATTAACAAAATTAAATTAAGTAAGAGGAGGAATTATATGACGAATAGTTTAATGATTTTTGAAGGTTCAGAGTTAGAAATTTTAACAAAAGAGGATGTAAATTTTGAGTTTGAAGGCACAGTTTTATTCAATGGGAAACAAGTATGTGAGATATTAGAGTATAATATAAACAACTACGCTAGAGAAATTACTAAGTATTGTGATGAAGAAAATGTTCAAGTAATTATAAAAGAAAGACTCAGTTCCAAAATGGAAGAGAGTTTAAAACTCAATCCGAATATCATAACACTGGGGCAAAGAGGAACAAAGTTTATAAATGAAGATGGTGTTTTTGAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTAAACTATATTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //