Array 1 185318-184434 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134407.1 Corynebacterium kutscheri strain NCTC3655 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185317 29 100.0 32 ............................. CACTGTCTGCGATCCAGAGTTTCCGCATTCCC 185256 29 100.0 32 ............................. CCCAAAGCTTTTAGTTGCTGGATGCGGTGTGT 185195 29 100.0 32 ............................. TGCTTTTCCGACGTAGCGTTTTTTCTTCTTCA 185134 29 96.6 33 .................T........... CTACGGCGACCCCCATCTAGAGCGCCGCGCCGA 185072 29 100.0 32 ............................. TCGCTTGGCCAACCGCGTTTAACCAGGTCAAT 185011 29 100.0 32 ............................. TCATGAGTTCCTCCTCGGATTGATATTTATTG 184950 29 96.6 32 ............................G TATTGTCTTTCAAGTGCCGTATTTTCCAGGGG 184889 29 100.0 32 ............................. GAAAAGAAAACCGCCCCTACAGAAAAACTATA 184828 29 96.6 32 ............................G GATCGCGTATCGACGCGATGGAAACACGCATT 184767 29 100.0 32 ............................. TCTTGTGAACTGGGCGGCTAGTTAAAAATGTT 184706 29 96.6 32 ............................T ATAGAGATGATCAGATGCAGGTGATGACGGCA 184645 29 96.6 32 ............................T GGTGCTCCAACTCAAGACTATTAGCCTCCCAG 184584 29 96.6 32 ............................T GTTTGCCGATTGATTTGAAACATGGACATGTT 184523 29 96.6 32 ............................G GTCAAACCTAAAGCAGGGGACACAGTAACGCT 184462 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 32 GTTGTCCCCGCGCGAGCGGGGATGTTCCC # Left flank : ATCTTCTGATAGTTTCTCTATAGAAAACAAAGTCATTGAGCTATGGGATGAAAAACTAGAACGCGTCAGCGGAGGATATAACTGGGATGACTCTTCAGGAGATGATTACCCTTGATTACAATTGTTCTCACAGCATGTCCAGCTGGGCTCAGAGGTCAGCTTAACCGCTGGTTATTCGAAATTTCCGCAGGCGTTTTTGTTGGGCATGTCTCAACTAGAATTCGTGATCGCTTGTGGTCGATTATTGTTTCCGAACTTAAAAATGGTCGTGCAATCATGGCATTCTCTACCTCCAAAAATGAGACAGGGTTTGAAATTAAAGTACACCGCCATGATTGGGAAATCATTGACTCTGATGGCATACCCCTCGTATTAAGACCAACACGTTCTAACCCAGAAAGTCCTTTACGGAAGGGGTGGTCAAAAGCATCACAGCGTAGACGTAAAAGAAAGTGAAGATATAACCCATAATCGGAACAGATCTTTGCTGGTTATTAAGT # Right flank : ACCAGATGTATAGCAAAAGATCGTACCCCGGTCTGGGATATAGATGGTTATAATGATTTTTCCAAACTCATAGAGATGTTCACACGGATAGCAATCATAAAAGCCTCGCTCTTAGCGATGGCGCGCAAACCTGGGATGAGGTGCTATCAAACAACCTCACAGATCTGCATGTCACTACTGAAAGATCTAAAAAGTAAAAAACGTTTCAGGAGAAAGTGTGTACTGTTAGTAAGTTAGGGATGAGTAGCTATAAAATTACGCAGGTCACCAGCTATAACACGGCAATTATTAAACGCTTACTTAAATAAATCCCAACAGTATTATGTCGTATTATTATGCTAATTTTACTTAAAATATAATTAGTTGACTTACGAAACTAGCTTCATAATGTTACTATGTAATCCCCCCCATGGGGGAGAAAGCCTCCATCATCTGAAAGGCACAGTTGTCCCCGCGCGAGCTGGGATGTTCCTGTATCTAATGTACTAGGTCTTCGTTGT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCGAGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2280662-2279288 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134407.1 Corynebacterium kutscheri strain NCTC3655 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2280661 29 96.6 32 ............................T ACACCCCCATGATGAGTAATTCATCGTGAGGA 2280600 29 96.6 33 ............................T TTATGGGTTCTTTAGGTGCGAAAGACACCGTGT 2280538 29 100.0 32 ............................. CTCATGCACCTACCCGCAAACCAACTCCCAGA 2280477 29 100.0 32 ............................. CCCGCCACACCTCGACTAGGTACGGGGTGACC 2280416 29 96.6 32 ............................T GACGGTGTGGTAGCGTTTCGTGAAGCAGCGAT 2280355 29 96.6 32 ............................G TTAACTACACAAGTCGAATAGCAACATTTTTA 2280294 29 100.0 32 ............................. CCTGATTTGGACATCATGGAGGTTGCAGAGCG 2280233 29 100.0 32 ............................. TTCCCCAGGGTTCTGTTAATCGTAAAGAGACA 2280172 29 96.6 32 ............................T GGAAGACGCTCATCCGAAAAGCGTGCCGCGAA 2280111 29 100.0 32 ............................. AATACCTAAGCATATTGCCGATATCCGCCATA 2280050 29 96.6 32 ............................T ACTTCAAAGCATTGCCCCTGCACCAGCCTAGA 2279989 29 100.0 32 ............................. TTGAGATAGCTCGTTGATTTAAAGGATTTATG 2279928 29 96.6 32 ............................A AACAGGTAAGTTACCTCACTCGCTAAAACTCC 2279867 29 96.6 32 ............................T GTGACGGACACGGAATTTGCCATCCTCACTAA 2279806 29 100.0 32 ............................. CGATAATGCATTGAATGCTTCTCCTAGTGATG 2279745 29 96.6 32 ............................G TAGTCCCGCTAGCCTACGGATTTTAAATTCTA 2279684 29 100.0 32 ............................. CTTGGTGTGCTGATCTCTAAGGGTGCGATGCG 2279623 29 96.6 32 ............................G TATCACTGATCTTGCTGCGCGCCCTGAGCGTA 2279562 29 96.6 32 ............................G CCCGTCTTCTGTGTGTCGCTCGACCCGGTGAG 2279501 29 100.0 33 ............................. CGTTTCGCATTCAAGGTGCTAAATTTGTTGACA 2279439 29 96.6 33 ............................G TATTGTTCCTGCAGGTGGGACAGCATTTATGGG 2279377 29 96.6 32 ............................G TGTATCGGCCTATTTTTCCCCTCGACCCACAC 2279316 29 93.1 0 ....................A.......G | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.8 32 GTTGTCCCCGCTCGCGCGGGGATGTTCCC # Left flank : GATTTCTAAGCGCGTTAAATCAATCCACGGTAGAACGTCGCAACGCCATCGCTAGGAAGAGCTTTATACTTAAAACCCACTCGACGACTATCCCGAAATCATCACGGCTTTAAAAAGTTCTCTTCTTCTAAGCCTTAAAATAAACACTATTAATAGCTCATCAAATAACAAGATCATTAGGCTTTCACGATGAAAAATAGGCCGCTAGAAAATCAATCCAACTGGAACAAATACTTTTTAGAAAAATGATTTTTCACGATTACTCGTTACACTCACGACATACCCAACTAGCTTAAAACTCAGCTAAAATAAAGCTGAAGTTGAGGTTCAAATACACCATCATCATTGGATGACCATCAATTCCAATGCTAGGTGCTTACGCTAAGCCGCACACAATCTTCCCCAAAATGCTCTAGAGAAAAGGTAATAAAACACCACACTGTGAACGAAAAGTGAAGATATAATCGGTACATGGAACAGATATCTGCTGGTCATTAAGT # Right flank : CAAGCACAAAGAAAAATGCCTCAGCAAGTGGTAAAAACATGGTCGCTTGCCAGCTAAATCCAGCTAGACGCAATCATATTGGCACAAGCAACATCTGCCCTACCAACAATAAGGGCGTTGTCATAAGTAATGTATCCGCTGCTCCACCGGCTAATCGGGTAAAGCTAATCACATAATCCACGCACTAAGCAGCACCACCCCTGCGGCTAGTAAGACCGGTGCAGGGGCGTCGAAAAGCGCACGAAAGCTCCACAACAACGCAGCCACAATAAGTGGTACCACAAGAAAATTACCCACCATAACCCGATAATGAAATGATTGTTTTTCTAATCGAATTGGTAACTCAGCAAAAGTTACCAGCATCAATGCCATCAATAGTGGAGTAATAAACACCTGCCACGGTGCATTGATTTTACTAGCACATGCACCGGCTACTAAAGCAAGTAAATAATAAATTGCAGAACGCATTAATGGTAGCAGGCTAGCAATCCGCCAGGGCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCTCGCGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //