Array 1 664-453 **** Predicted by CRISPRDetect 2.4 *** >NZ_LILO01000038.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024734 contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 663 29 100.0 32 ............................. TTGCCGTAACCCTGCCGACCACCAATATTCAC 602 29 100.0 32 ............................. CAGGACAATCCAGTAAGAAATTCAATGACCAG 541 29 100.0 32 ............................. ATAACGCGCACCGGCTTCCACCTGGCGGATAT 480 28 79.3 0 .................A..-..G..GAC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GGTTAACCCCTGTGGGCGGGGATAGGTCG # Left flank : AGTGGAAGATTTGAATGTGCGGGGAATGATGGCAGCGCCAAAACCGAAGCCAGACCCGGATAACCCCGGCGCGTTCCTGCCGAACGGCGCCAGCCGCAAGCGCGGGCTGAACCGTTCGCTGGCCAGTGCCGGCCTGGGCGAGTTTTTCCGGCAACTTGAGTACAAATGTGCATGGCGCGGCGTCGCGCTGCTGAAAGTTGGCCGCTGGGAGCCGTCCAGCAAGCGCCGCAGCAGCTGTGGCGAGATTAATGAATATTTGACACTGGCAGACCGCCGGTGGCAGTGCCCGGTGTGCGGCGCAGAACATCACCGTGACATTAATGCCGCGGTGAATATTGCTGCCAGGGCAGTGTAACGAATAAAAATAGGGCGCGGCCCGCCCGAATTAACGCCTCCGGACATGGCCAGTGTGCTGTGGTTGAAAGAGGAAATTTCCGCAAAAATCTGGTAGAAATTCAGGCGTTATTTTTCGCTATAGATTTCAGCCAGATGCCGCCAGA # Right flank : CTAAATCATCGTTAAGCTGCGGCACGTAGGGCCGCGGAAACTTAAATTTTAACTTGTAATAAATCCATTGTTTAATGTATTTAATTTAACTGCATGATTTAATTGATTTTAATTTACTGCTTCATTGTTTGAGACGCTTGGTGATTTTTTCCGTAACTATGAAGTTTTTTATGTGTTTTTACTAATTGATTCCATGTTGATTAACCACTCCCATTATCGTAACAATTTATACTAATGAAATTGTTGGTATTATATTCCCCTCCATATTATCACTTAAAGCCACAGCGAATAATTTTCGTAACAAGTTCACAAATGATACACACCCCTTTTTATCGTAACAACATACCGTAAAGCCAATCTTCGTAACATAGAAAACACCTATCGTAACATATTACCACAAGATATCGACACAACATATATAATTATACGCGCGTATAATTATATATGTTGTGT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTAACCCCTGTGGGCGGGGATAGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 106702-106184 **** Predicted by CRISPRDetect 2.4 *** >NZ_LILO01000007.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024734 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106701 29 100.0 32 ............................. ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT 106640 29 100.0 32 ............................. AATATATGGCGCTCACGCGCATGAGCATTCTC 106579 29 100.0 32 ............................. CAGGGCAAATTCATCCGCCGCTGACCACTGGT 106518 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 106457 29 100.0 32 ............................. GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT 106396 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGGCC 106335 29 100.0 32 ............................. TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT 106274 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 106213 29 96.6 0 ............T................ | A [106186] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123493-122854 **** Predicted by CRISPRDetect 2.4 *** >NZ_LILO01000007.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024734 contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123492 29 96.6 32 ...........................T. AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC 123431 29 96.6 32 ...........................T. CCGTGCCTGTCCAGGACAAATTGCCGATTATT 123370 29 96.6 32 ...........................T. CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA 123309 29 100.0 32 ............................. GCATGTGACAGTCTGATTTTTATAGCGCATGA 123248 29 96.6 32 ............................C AATTTAGGGGCCGGAACTCCGGGAAAGGCAGC 123187 29 100.0 33 ............................. CAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA 123125 29 100.0 32 ............................. TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT 123064 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 123003 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 122942 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 122881 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAAGCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //