Array 1 114033-114915 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJLM01000010.1 Escherichia coli strain MOD1-EC583 MOD1-EC583_10_length_131861_cov_60.3418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114033 29 100.0 32 ............................. TAGACAGAGTAATAAATAACGCAGACAAAAAC 114094 29 100.0 32 ............................. AGTAGCCTGGAGGCGCTCGCGCGCCTCTTCAG 114155 29 100.0 32 ............................. TTTTGTGATTCAGTAATCGTTTGAGTATGTAC 114216 29 100.0 32 ............................. TTTTGTGATTCAGTAATCGTTTGAGTATGTAC 114277 29 100.0 32 ............................. CGAATCCCAGCCTTGAAATTTTGGCTCATGGA 114338 29 100.0 32 ............................. CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG 114399 29 100.0 32 ............................. AGTGCCAGCGCCGCGCACGCCTGATCATATGT 114460 29 100.0 32 ............................. GGGTTCTATTTCCTCGGGATTTGCCGACACGC 114521 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 114582 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 114643 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 114704 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 114765 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 114826 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 114887 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60418-59230 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJLM01000023.1 Escherichia coli strain MOD1-EC583 MOD1-EC583_23_length_69103_cov_62.7311, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60417 29 100.0 32 ............................. GTAATAAAAAATATTCTATTTCTGCTGAATCA 60356 29 100.0 32 ............................. CTTGCGAGCAAAAGATCCAGGCCGAGAAAGAC 60295 29 100.0 32 ............................. CCCGTTAGGCCGGATATCCACTTTGTAACGCC 60234 29 100.0 32 ............................. AACATTAAATTGCCGTGCTGGATGAATCGCGG 60173 29 96.6 32 ............................C TGGATCAGCTGGTTCAATCGTTTACAGCACTG 60112 29 100.0 32 ............................. TCGAAAAACTTCGTCCTGAAAAAATTCATCAT 60051 29 100.0 32 ............................. GCAGTAAATTATTTGACCTCGTTGATAATCCC 59990 29 100.0 32 ............................. CCGGTGCAACTGATATTGATAAACGTCGACTC 59929 29 100.0 32 ............................. ACACCCGACCGCTAACCGATTTCGTTACAGTA 59868 29 100.0 32 ............................. TGTATCACCGAAAGAATGGTTTGACGCGCAGG 59807 29 100.0 32 ............................. ACGTCTATCATTTTCAGTACAAGCTGGGTTTT 59746 29 100.0 32 ............................. GACGATCCCGAGATTCACAGAGTTACAACTAA 59685 29 100.0 32 ............................. GAAATTTTCACATGGATTGTAGCCCTGTATAT 59624 29 100.0 32 ............................. GCCAGACGGTCGGATTAGGTGCAAATCAAAAT 59563 29 100.0 32 ............................. GTCATCACGATGAATCAAAATTTCGCCCGGCT 59502 29 100.0 32 ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG 59441 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 59380 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 59319 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 59258 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACCTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //