Array 1 2598-2150 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMK01000034.1 Photobacterium aquimaris strain BS2 CFSAN065502_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2597 28 100.0 32 ............................ AGAAATGGTTAAGGCAATGACAGGGTGATCGA 2537 28 100.0 32 ............................ TTGAACATCGCTACCAGCAACAATCGCTTTGC 2477 28 100.0 32 ............................ TTTCTTTAGGAATGGACGCATTAACGCTGTAT 2417 28 100.0 32 ............................ ATGAGGGGCATCCGCCTACTAAAGCCGAAGTT 2357 28 100.0 32 ............................ AAGCAGTGTTATTGAATCAATAGTACGTCAAC 2297 28 100.0 32 ............................ TGCTCCTGTTGAAGCATTTTAATTAATTGTTC 2237 28 100.0 32 ............................ ATGATTGTTTTGATTGCATGATCTGCGCCGTA 2177 28 96.4 0 ...................A........ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 99.5 32 GTTCTAGGTGAGGTATGTGGCCTAGAGG # Left flank : AATAATCGAGGTGATGGTGATAAGCGCGTACATTTTGAATGTGAAATTTGTAAATACATCGAAAATGCAGATGTTGTTGGCGCCATTAATGTTGCTGGGAAAAAAATATGGCTGATGAAAAATGGCAGGCCTATCAAAGGGAAAAAAATCCCAACTGATTTATTATTTCAGAACTGGCAAGCAGAGCACCTTCAACTATGATTAAAGAGGTTGCGGGATGGATTTTAAATAATCTATTTTACCCTCTCAACCAAGTACTGATTAACGCCGAACGCGTCCTAGACCCTAACGTTGATTGGGCAAAAGTCACTGACGATAATCTGCAATGAGCAATGCTCAGAGTGGTAGAACGTAATTCGTATCGTCCGATACCCTTTTTTAAACGTGTCTTGTAAGTCATTGTTTTATGAAGCGTATCAAACATCACTTAGATATATGGTCATTTAGCTAGAATCTTACTAATTCACTGAACTAGTGGTGTTTTTAGTAAAAAACCTACA # Right flank : AGAATTAACCGATCAGGAAGGATTAATTCTTCGGTAGGAATGTTGGTTCAGTTACAGCGCCTCAAACGCTCTGTAATTGACGATATTGCATATATCGCCACAATCCCTTCAGTTACCACTAAAAATCCAGCACAACGTCATTCAGGCGCCTTAACATCAATCTATTATCATTACTTAAAATGTATTTAGAAAGTAGGGGGCCGTTTCTGTTTTTTAAATCAAAAGAAAACAAATCCGTTTGTTGGCAATTCGGAACGAATTTCTGACATACGTAGATCGCTTTAACGCTTTAGATCGCTTTAAACGCTTTAAAGACGCGCGCGTGCGGTAATAGAGGAAATAATTTAAAGGTGTAACGATTTGAGGAGAAAGGTGTAACGATTTGAGAAGAAAGGTGTAGTGATTTGAGGAGAAAGGTGTAAGAGATTTTTGTGGATAACTATCCATTTTATTTTTTAAAGGTGTAACGATTTGAGGAGAAAGGTGTAAGAGAAATAAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAGGTGAGGTATGTGGCCTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 60418-56341 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMK01000025.1 Photobacterium aquimaris strain BS2 CFSAN065502_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 60417 32 100.0 34 ................................ ATTACCTTGCGTCAGTACGTAATCACCATCAGTT 60351 32 100.0 35 ................................ ATCGCAACAATATCTACAACTTTTTTAATCATTGG 60284 32 100.0 35 ................................ TAAATCAGTAACTTAAAACAAAGGCGGCTAATCAC 60217 32 100.0 34 ................................ TTTGGCGATACGATAAACGGTTAAGTTTTCTTTT 60151 32 100.0 35 ................................ TAGACCTAACGATTTAAAGATTTCGTCAGTGACGG 60084 32 100.0 35 ................................ CACAAGTGGGTTAACTACAAAGAAGCTAAAGACGT 60017 32 100.0 35 ................................ TACAGTTAAATATTTACAGCCGTATTCCTTGAGAT 59950 32 100.0 34 ................................ GAAGGTATCGTGAGCAACACCCAAGCGTACAGAA 59884 32 100.0 34 ................................ TCCTCGGTATGCGTATAACCCATTGCTCGATCGT 59818 32 100.0 34 ................................ CATAATCACCTTGTTGGTGAATGCACTAAAAGTC 59752 32 100.0 35 ................................ GTTACATGATTAGTAAAGGTGTCGATAAATCAGAA 59685 32 100.0 33 ................................ TGCATCGCTAGGCTTACCGCTTTGTTGAGCCAT 59620 32 100.0 35 ................................ CATAGCTTCAGCAAGGGTTGTGTCCTCACCAACAA 59553 32 100.0 35 ................................ TTGACTACCACCGTCACCACCTTGCGCATTAGGAT 59486 32 100.0 35 ................................ TTGCTGAGCAATAGGAGCGGCTGAGTTAATAGCTG 59419 32 100.0 35 ................................ CGCAGTTATGGCGTGTTTTGGTGGGCAATCAAGCT 59352 32 100.0 34 ................................ TCTCACTAGAACAGCATTTTGCTGATCTTGATAA 59286 32 100.0 34 ................................ TGGTTTAGTGATCTTCTTCTCGCGGCGCTCTTTA 59220 32 100.0 34 ................................ AAACTCACGTAACGCGTCCAAAAAATTATCTCTA 59154 32 100.0 34 ................................ CCCGCAACGGCAATCAGCGATGAATACGACTGGA 59088 32 100.0 35 ................................ AAATCATAGTCACGAATCGCTTCGCGGTAACTTAC 59021 32 100.0 34 ................................ ACAGGGTCTTGCATGTACTGAGCTCGGAATAGAT 58955 32 100.0 35 ................................ AGGGTTAGAAAACGACCCTCCAGAGTTTACGAAAG 58888 32 100.0 34 ................................ GCTTGCAACATCGACTGACGCTGCCCTACAGCAA 58822 32 100.0 34 ................................ TTGTATAATCGAATATACCAAATATAACGCATAT 58756 32 100.0 36 ................................ AATTGAAAATGATATCCCGTTTAAGCTTTTCCCCGA 58688 32 100.0 34 ................................ TTCTCAATCCAATGCACGCCATCAGTAGTGCGAA 58622 32 100.0 34 ................................ TTCGGCAATCTCTTTTGACATGCCTTTTTTCATT 58556 32 100.0 34 ................................ AGCAAAACCACTTGCCAACTCTTTCTTAACTTTC 58490 32 100.0 34 ................................ AAATGAAGTAGCATCACCACCAAAAAAGTGACGG 58424 32 100.0 34 ................................ CCATAATTGCCAGCCAAACGGTATTTCAGTGGGT 58358 32 100.0 34 ................................ CCACACAAGAAGGTGATTCAACGTGACTTGCTCT 58292 32 100.0 34 ................................ TATCAACTGGGGGTGGTAAGTCGTACTTAATGGC 58226 32 100.0 34 ................................ TGACACATGTCGTACGCGATAGCCATAGGATTAT 58160 32 100.0 34 ................................ TTCAACGCTATAAACGCTGCGTTTAATTAACCGA 58094 32 100.0 34 ................................ TTTAACGTAAAAACTCATATTACGTTTAGCAAGA 58028 32 100.0 34 ................................ CTGACTACACAGCAATACCTGCCAGCATCAGAAC 57962 32 100.0 35 ................................ CGAGTAATATCTTTAGTCTTAGTCAGCACGACAAC 57895 32 96.9 34 ..G............................. CAGAGACTACTGAAACTCAGTTTAAGACTGTTGA 57829 32 100.0 33 ................................ ACTGTTTCGAGAGCGCATGGCCGAGACTTGTTG 57764 32 100.0 34 ................................ CACCAGAGTTATTGCCACGAGGTTTTTGCATTAT 57698 32 100.0 34 ................................ TCGATGGTCTTTAATGAGTTATAACCCTTACGCA 57632 32 100.0 34 ................................ TTAGCAGTTAGTTGCAACGCGCCTGCTTGGTCTT 57566 32 100.0 35 ................................ ACCCATTACATAGTGACGACGATGTTCACAATCGG 57499 32 100.0 33 ................................ CTTGCTAAAATCACCATACCCGTAGTCGATTCC 57434 32 100.0 34 ................................ TGCACCAGCTTGGGCGATAGGGGTTTGCCGTGGT 57368 32 100.0 34 ................................ ATTTTGCGTAGTACCGATAACGGGGTCTGCATGT 57302 32 100.0 34 ................................ ATACTTACCTCGTTAAGTTGATGGGGTAACTTTA 57236 32 100.0 36 ................................ CTTGGTGCAACTATCGCTTATGATGAAATCGAATGC 57168 32 100.0 35 ................................ TTGTAGTGTCATGCCGATAATCTCACTTTGATATT 57101 32 100.0 35 ................................ ATTTTTAAATGCTTTACGTGTTGCGCTTAAATCTT 57034 32 100.0 34 ................................ ATTGCTGGACGACGCTAGTAGTCGCGACATTCAC 56968 32 100.0 35 ................................ GTGAACAAATGCTGAAAGATTTAATTAAAACATAC 56901 32 100.0 34 ................................ ATGCTAACGCTGGTGGAGGCTCAGGGTTTGAAGT 56835 32 100.0 34 ................................ GTCTTAACCCACTTTAGTCGTCTTAACCGATACG 56769 32 100.0 34 ................................ AGATACAGACCAGCCGCAGGTGATGACACCGTAG 56703 32 100.0 35 ................................ ACCGCAGGTGATGCTATCGTGTTTAAACGTAAATT 56636 32 100.0 34 ................................ CCAGAACAACACCAGAAACACGCTATTTTGCTTT 56570 32 100.0 34 ................................ CCACACAAACGAACACCGCTAATATCCCTATACT 56504 32 100.0 34 ................................ TAGACGGCTTTATGACGGTGCAGTTTGTTTTGTG 56438 32 100.0 34 ................................ TTCCTTGGCTAAATCTTCCAGTGCCTTGATGCAG 56372 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 62 32 99.9 34 GTCGCTCCCACCACGGGAGCGTGGATTGAAAC # Left flank : TTCTATCATCGTTAATTGAGAACGCTAACTATGATGGTATTAGTAACCTATGATGTCTGTTTAAGTGATTCATCTGGCAGACGTCGGCTGCGACAAATAGCCAAACTTTGTTTAGATTATGGTGTAAGAGTTCAATATTCAGTATTTGAGTGTGATATAGCACCAGATCAATGGGTCAAATTTAAAGCTAAACTACTGGCATTGTATGAACCAGAAGTAGATAGTTTACGTTTTTACCAATTAGGGAAAAATTGGCGTCACCGCGTTGAACATCATGGTGCTAAAGTTGCTGTCGATATATACCAAGATAACTTGATTATCTAATTCGCTAACCTTCTGTTCTCATGAAAAACCCACTAGGCTAGCTAAATTTTAATTCACTGATCATAAAGTTCTTTTACAATTTAGGATCTACTATTCAAAAAATCATCTTACTTTTAAATATGGTTAGCGCAAAAGAGGTATTCAGCGTAGGCTACGCCAGCCTTACCCAAAAGGCA # Right flank : AATGGTTGGCGTACAAATGGCAATGATGATAGGTGCGTCATGATCAAGCTAACTGTTGCCAATCCAATGATTGATAATCAAGTTCATTACCAAAGAGGCGGCATTGGGTTATTTAATCTTGAATCATTTCAGGGGTGACACACATGCCAAACAAAATAATAACGTCACTTTTTTATCATATGTTAATGACAACAAGTCGAAAAATAAGCGCTTGAGGTGAACTCGAATCCCATCATTAGTGCAAGTTAATAAATCTCAAAAAATGGCTAGGGGTTATTATATCTACTCCCCACCAATCAGCCTAAAAGTCACCTCATCCAGCGGCGATTTACCATCCTTAAATAGCCGCAAATAATCCTCATAGCTCAGTGAATGATATTGGTTAGCAGGCTTTCAGTAGCGAAGCTCTTAGAGATAATATTGGCTTTCTAGGTTAGCCGGTTAATTGAAAAACAAGATGGTATTTGGGGCAACAAGGCCAAGCCAGTACATTTAGAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCACCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15836-15097 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMK01000009.1 Photobacterium aquimaris strain BS2 CFSAN065502_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 15835 36 100.0 34 .................................... AGCTTTACTACGGTGGTGTAAAAGACAAAGCCCC 15765 36 100.0 35 .................................... TGGTTTGATAGTGGCTATATCTTTGATGTGAGTTG 15694 36 100.0 34 .................................... TCACAAAAATGATCAAACATAATGGTCGCAAAAT 15624 36 100.0 35 .................................... CAGTTGTGAACGTCACTGATGTTATCTAAAACATG 15553 36 100.0 34 .................................... TCGATCTGAATCCGATTTAGGCATTTTGTACCTG 15483 36 100.0 34 .................................... TGGAAGTGGGCGACCGTTGCACAACCATCTTTGC 15413 36 100.0 34 .................................... AGAGCGAATATTGTAATACTGATCTGTATCATTA 15343 36 100.0 35 .................................... GAGCTAAATCCTGCGTTACGTGGGCGGTAGTGCTC 15272 36 100.0 34 .................................... TTCGAAAGACGCCCTAGGATAGCAGATAAAAACG 15202 36 97.2 34 .........................C.......... TGAGTCTCACATTTAACAGGCACTGGCTCAACAC 15132 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 11 36 99.7 34 GCTCATCCGAGTGTAAAAACTCGGCTACATTGAAGC # Left flank : ATTGTTAGCCTTGGCTGGGATCCTAAGTCAGTTAAACAAGCCGCGACATTAGCTGGCGAAAATGCCCCAGACAAAGCCAAACATAAAACAGTTTTAGCGGGACAATGGCTCGCTGCAGAATCTTTATTGCTGACCTGTCCTCTACCACGACAGCAAAAAATCTATTCTTGGAGAACGTGGTCGACAGCTGTAGATCTAGAGGGAATACAAGCTATTATTCAATCTTCAAGCGATTGCTGGGGAGGTCTACACTTTACCTCAAAAATCTCATTTAGCGGTAATTTTAAATTTTTCTTGCCATCAACAGTAGTGTTATAGCTACGTTGCGCTAACCCATTGTTACCATAAAAATACGGTTTGGTTAGCGCATCAATAACTACTTAATAAAACACGCATAATATTATCGGTGTTATATGTATAGATGCTTTTATTACAATAAAAAGCAAGTTAGCGAAAAAGTCGAATTTACGCTAGCCCCAGCAAGAGCTAGAACCTAGGGT # Right flank : AAACATTTGTTGTTTTATCACACCATATCAGCGAACTTATCCACCCATTTCACATAACATCTGTTATATCAACTCACCACCAATCAGCCTCAAAGTCACCTCATCTAGCGGCGATTTACCATCTTTAAATAACCGCAAATAGTCCTCATAGCTCAGTGAATGATACCACTCACGCTGTTTAGCCTTATACTCGTCCCATTGAGCATCATCAGCTCTTATCTCAACTAATCGCTGCCGTTCACGCTCTCGCTGTTTTTTTCTGTATTGTTCTAATTTTTCAGGATCTTCAGACAGCTTAATACGATTCTTTTTGAGATTTTCACGATGTCGTTCTAAGAAAAATGACCTAAATTCCGGATCAGCTTCTAGCCTTAATTTCAGCGACGATAAATACTCTTGTCGAGTAACCTTAAAATCCACCGTACCCTTAACCATCTGATAACGTTGTTTTTCTTTACGGTTATTGCGTTCTTTTTTACAAGCATCAGAACAAGTAAAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCATCCGAGTGTAAAAACTCGGCTACATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 174772-174143 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMK01000005.1 Photobacterium aquimaris strain BS2 CFSAN065502_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174771 28 100.0 32 ............................ ATCAAAAGCGCCATCAAGTGCCATTTAATGCC 174711 28 96.4 32 C........................... AGCCGCGTTTTGTGACCTGATTGCGCACTTTT 174651 28 100.0 32 ............................ ATCAGGGCCACGAGTTTCACAACTCAGCTCAT 174591 28 100.0 32 ............................ CGTCGCAATGGTGACAGTCAACGGGGTGCGCC 174531 28 100.0 33 ............................ CTCAGCTGCAGCAAAATCGTCTTTGATTAACCA 174470 28 100.0 32 ............................ TGAAAAACCTCAGGTATTAGCCTCTCAAAAAG 174410 28 100.0 32 ............................ TAATCAATCAGCTAAACCACTTAAACCAAACA 174350 28 100.0 32 ............................ GTTAATATGATAATAGATGATACATCAAAAAC 174290 28 100.0 32 ............................ CATTAATTAAACCCTTCTAGTTAATTGATAAT 174230 28 100.0 32 ............................ TTAGACAATGACTTGTAAACTTTTTCAATTAA 174170 27 82.1 0 ....................-..G.TTG | A [174146] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACCCGTGTTACTGCTATTACGGCAATTCCAAGTGACATTAAAGGCTATCAGACTGTCAAACGCGTGCAGACTAAAAGTGCCAATAACAAGCGTAAACGTTCGATTGCTAAAGGTTGGATCAATGCAGATGAAGCTATTCATGCTATTGCTGATACTGCTGAACGCAAGTTAACTTTGCCTTATGTTCAAATTCAGAGCTTATCTAATCAGAATGTTATGCGAGTATTTATTGAGCATAGCAAGGTAGTTAGTGATGCAACGGATGGTGTATTTAGTAGTTATGGACTAAGCGCTACTGCAACGATCCCTGTGTTTTAAGTGTTGTTGTGATTATAAGAGTAAGCATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTGTGCCTTCATTTCTAACATTTAAAATCAATAACTTATAAAGATACGATAAAAAAGGGGTAAAAGATGTTTTTTGGGGTTTTATTTAAATTAAACAATCGCTTATTATAGATATACTTCA # Right flank : TTATTGGCATACTATAAAATATAACTTTACGCTCAAATTGTTATTTTTATTAGAAAAGCCAAACTAAATACGATGCAATTATATTTTGCTGGTATAGATACATTATATTTTCAGTGGAAGACATTCCGTTGATAAGTCATATTATTCATATTGTTAAGAACTTTTCCGTAAACCATTGAAGGTTAAAGCCTTGATGTTTATCATGGGTTTACAAAGGATTTGTAGCTGTTTGGGATGAAACTTTGGATAAAGAAAAATTTAACAATATTGCGAATCATATTTTTAAAGCAGAAGCTGTAAAAGCTGCTGTTTATGATGTGATCACTCAGAGCATGACAGCATATAGAGCAGAGATTGTTCATGGCGTAACCCCTAATACTTTGAATCGTTATGTTAAGAAATTTAATCTTGAATTAGATTATTTACAAAGTATGGGTTTAAAAAATAACATCATAAAGTCCAGTGCTAACTGGACTTTTTTAGTAAATAGAATAATGCAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 183329-184018 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMK01000005.1 Photobacterium aquimaris strain BS2 CFSAN065502_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 183329 28 100.0 32 ............................ GCGAAATGGCGTGATATTGACTGGGAACTCAA 183389 28 100.0 32 ............................ AAAAATATACCGACCACAAGAAGCTCTATTCG 183449 28 100.0 32 ............................ TATGTTGCGTGCTGTGAGCTTGTATTTAGTAT 183509 28 100.0 33 ............................ ACAATCAAGCAAGCTTCATTCAGATAGTCTGTT 183570 28 100.0 32 ............................ TTTGTGAAATCGTATATATAACACCAGAAAGA 183630 28 100.0 32 ............................ AGCAGCGCCAAAGCTGAATGCTAAGGCTTGGG 183690 28 100.0 32 ............................ AGCAGGATTACGGAATTTAGCTTCAGTGTCAG 183750 28 100.0 32 ............................ ATTTGTGACGCCGAGGGTAATGCGGTCCCTAT 183810 28 100.0 32 ............................ TTGAAACGAGCCACCAATATAAACAATTTTGA 183870 28 100.0 32 ............................ CACAGCAACAAGACCAGCACCAACAACAGCCA 183930 28 100.0 32 ............................ ACACATTGGTTAGTTTACTGGGTGTTTAACGG 183990 28 92.9 0 .........................TT. | T [184011] ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GACTTCATTAGCTGAAAATAACGGCGTTCCGCCACCACCGCAAAAACCGACTAGCACACCAGCTTTAGCTAATTCACGCATTGCTGCTTGAGTAATCGATGTGCCAGTTCCAAGCATGATGGCGGTCGTGTTTGCTATGGGGATATTCCAATATAAAGATTGCTTACCTTCGTCAGTGACATATTCAACCCGACCACCATTTACTAACACACGACAATGCTGCAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACTATAAAAAAACGCATTATATACACAGATACGCATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGCTAACCATTCAATCTATATAAAACAACAACTTAAAATATTGGTAAAAAAAAGGGTTTTTGATGGAAATTTACTGTTTGGCTTTTATAAGCAATAACTTATACTAATCGTGCTTCA # Right flank : ACTGGCTGCAGCTATTGCTTCTTTTATTTCATCAGAACTATACCCTTTTGAAGACAAGTAAGCATAGGCTTTACTTTTATCTTTAAAATCAGATAGATTAAACCGTTTTTTAGCCAGTACTAATTGACAATTTTTATAAAAATCGACCTCACCTGCTTCCTCTAAATCGTAGAGTACTTGCTCAAGATGAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATCACCGTTTTGCCTTTGAGCTTACGTACTAACTTCAACACTTCTGTTTCTAAATCTGCATTCATGCCTTTGATTTTAGCTTTACTTAATAATGTATCTGCGGCGGTGTGTTCTGAAATTGCAAATGAAATGTCCTGAAAACTAAATCCACGCTTAGTAAGATCGTTGGTTACTTTTTCTTGCGTCGTTTGGCTAAAATCCTCATAGTTACTTAGGCGACGGGTTATTATCGCAAGTTCTGATACCTGATTTTTATCGATGATCTCAGCTAAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //