Array 1 688-984 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV790830.1 Neisseria sp. HMSC31F04 Scaffold728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 688 33 97.0 33 T................................ TTACCATGCTCAATAGGTATGACCTTAAAACCG 754 33 100.0 33 ................................. TACACGGAAAAGACAAAGCGGACAGACGCTTGA 820 33 100.0 34 ................................. ATTCATGACCTGCTGCCACCTGCCGCATCGGGGG 887 33 97.0 32 G................................ ACGACTTCGCCGCCAAATCGTCCAACGCCTGC 952 33 97.0 0 .G............................... | ========== ====== ====== ====== ================================= ================================== ================== 5 33 98.2 33 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : CGATAATCGCTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATCGGTTCAGGCAGCTACCCGCTTAGCGGCCGCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGCCCGGGCAAATCCCTAAAAGAAGCGGTTAAATCCAGCCGCCTTCAGGCGGCCGTGTGTTGAAACGCGTCCCGATGGCGCAGTCGCCATGTCTGCGCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAATCACCGTACTCCCCCACGCTTCACTCTGCCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATTAGCTCGAGCGTACTCATCGGCACTTCGCGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNCCGCCTTCAGGCGGCTGTGTGTTGAAACAATCTTTACGCCAAAACGGCTAAAAGATTTTTCATA # Right flank : A # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 59270-60744 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV790831.1 Neisseria sp. HMSC31F04 Scaffold729, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 59270 33 97.0 35 T................................ ACATGAGGTTATACAGGAGGCCGTGTCCGTCCGCG 59338 33 100.0 33 ................................. GTCGCGGTTGAGGGCATGGAGTTGTTCGGCGGT 59404 33 97.0 32 T................................ ACACCATCAGGAAAGCGAAATCCTCTGGCACA 59469 33 100.0 34 ................................. AAATTTCCGTACTGCTCCATATCGGCGGTTTTGA 59536 33 84.8 11 ............................NNNNN NNNNNNNNNNN Deletion [59580] 59580 33 87.9 32 NNNN............................. TTAACGTATTATTGAGCGCCCTCGCCTTTTCG 59645 33 100.0 35 ................................. AAACCGGCGACAATCACTATTTTGCCTGCTTTGAG 59713 33 97.0 35 G................................ AAAGGCCATCTGACTTGCCCTACGGTGGATAAGTG 59781 33 90.9 14 G..............................NN NNNNNNNNNNNNNN Deletion [59828] 59828 33 87.9 32 NNNN............................. GATTTGGACGGGTTTTCGGTGACAGGCTACTT 59893 33 97.0 33 T................................ TATTCGAAAGAGGGAAATGAAACATATCGAATT 59959 33 97.0 32 T................................ ACGGTTAGACAGCGCCCTGTCTGCGAATGCTA 60024 33 100.0 33 ................................. ATCCTGTTTTTATTATGATTCCGATTGGAATCG 60090 33 97.0 33 T................................ AACATGACGCAGATGGAGCGGGACAACTTTACG 60156 33 100.0 33 ................................. AATCCTGCGAAAGCAATCGCTCAAACCAATCCT 60222 33 87.9 14 G.............................NNN NNNNNNNNNNNNNN Deletion [60269] 60269 33 90.9 33 NNN.............................. AACACCGACGTGTACGCCACATCCGGCGGCCTG 60335 33 100.0 34 ................................. ATTCAGCCGGTTGGTGTCGCTCTGCGGGTCGTCG 60402 33 97.0 35 G................................ ATTGCCTCTTGGGTTGTGCGGGCAATGATAGTGAA 60470 33 90.9 13 G..............................NN NNNNNNNNNNNNN Deletion [60516] 60516 33 84.8 34 NNNNN............................ GACCATTTCGGGTATGGCAGGCACAAACATTTCA 60583 33 97.0 33 G................................ GACCGCAAGGTGAACGTCATCGGGTTTAAAACC 60649 33 97.0 33 G................................ TGCGCTTACGGCATGCCGGTGTCGGGTATCACT 60715 30 87.9 0 T.............................--- | ========== ====== ====== ====== ================================= =================================== ================== 24 33 94.5 30 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCCAAAGGACAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTCTGGATTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCTGATCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGTGCAAAACCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCAGTTCTCATGAAAATGCTGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATAGAGCAAGGCTTTTGAGAGAAGC # Right flank : | # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //