Array 1 3905441-3902559 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065050.1 Streptomyces solisilvae strain HNM0141 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3905440 37 100.0 37 ..................................... GTCGTGTCCAGGGCCGCCTTGCGGGCTACGGCGTCGG 3905366 37 100.0 37 ..................................... CGTATGACTGATCACCTCGGCGAGGTCGTCATCTGAA 3905292 37 100.0 37 ..................................... GCCTGCTGCGTGGTGAACACGGGCTCCGGCCGTCCGG 3905218 37 100.0 36 ..................................... AGTTGGGTCGGCGTGGACGGCACCGAGGTACTGAGT 3905145 37 100.0 38 ..................................... CACAAGAACGACAGCACCCCGTGCCTGAACACCCCCGA 3905070 37 100.0 36 ..................................... GGCGGATGGGGCGAGAGACGCTGACCCGGCGTCACC 3904997 37 100.0 35 ..................................... TGTGGCTGCTCGCGGTCGTCAAGCGCGCGGTCCGG 3904925 37 100.0 37 ..................................... ATGAATCAGCGTGCGCGGGGATGTGGTGGGATCTGTG 3904851 37 100.0 35 ..................................... TGCACCGTCTGCCAGTCCTTGGCCGTGGCTACGTG 3904779 37 91.9 32 ...................G..G...........C.. CGCTCTTCCTGGAGGTGTCCCTTGATGGGCTG 3904710 37 100.0 37 ..................................... ACTGAAGAGGGCTGGCAGGTCTGTAGGCGCTGCATGG 3904636 37 100.0 35 ..................................... GTTTCGTCCCTCATGTCGAGTAGTCTGCGCCAGCT 3904564 37 100.0 35 ..................................... CCCACCCGGTGGGGAAGAAGTGGCGGGGAATGCTG 3904492 37 100.0 36 ..................................... GAGCAGACCCCGGACAAGAAGACCATCACGGTCGAC 3904419 37 100.0 36 ..................................... AGGAAAACCTGTGCGTCATCCAGACGGCCGAGAGTG 3904346 37 100.0 37 ..................................... ATCGTGTTCGCCGAGCCCATCGGCGGCTACGTCGAGG 3904272 37 100.0 37 ..................................... TTCCCCGAACTCGGCAACCGTACCGGCCTGCTCGCGC 3904198 37 100.0 36 ..................................... GAAGAGGGGGTGAAGGCCCTCGCGCTCAAGGCCGCG 3904125 37 100.0 34 ..................................... CCTCCCCTGGCGAAGGGACAGGGGTCGGGGTGTC 3904054 37 100.0 36 ..................................... CTACGCAGGGCCGGGCTGGACCCGGACGACGTGCAG 3903981 37 100.0 35 ..................................... ACCGCGTCGCCCATGCCCGGGGCCCTGGCGATGAT 3903909 37 94.6 35 ......................G..........A... CAGATCGTTGACACGTGGCTGTCCCCGCGCGCCGT 3903837 37 100.0 36 ..................................... GGCCTGACCCTCACCGGCACCGGCCAGGTCGCCTGG 3903764 37 100.0 35 ..................................... AGGTACAGCACCTTGTGCCGGTAGCCAAGCAGGTC 3903692 37 91.9 37 ........................G.G..G....... TTACCGGCCCACCGCGAGGCCCGGCATGATCTCCGCA 3903618 37 97.3 37 ................T.................... CCTGGATCCGTCACATCCGTGTACCGGCCACGGCGTG 3903544 37 94.6 35 ...........G....T.................... GTCAAGTTCTGCATGGCCGAGCAGCCCGGCGCCAA 3903472 37 91.9 36 ........T..............T.....G....... ACGAACTTGGGGTCCGCGCTGTTTCCGGTGTAGCTG 3903399 37 91.9 37 ..........C.....C.......T............ GACGTGTCTGCCAAGACTGTCAGTCGCGTGCTGAAGG 3903325 36 89.2 37 ....T.T.-..........G................. TCCTGCGGAGTGGTCGGGTGGGACACCGAACGCCCGG AA [3903302] 3903250 37 86.5 37 .C..A.............AGG................ AACATGCCCTTGTCCAGCGTGGGCAGGCGTTTGGCGG 3903176 37 94.6 36 ...................G............A.... TTCAGCACCCACTTCGCCGCGTCCCGGCCCGATCTG 3903103 37 94.6 36 ...................G..G.............. CCGCGCGTTGATCAGGGACGGAGACCTGAGTCCCGG 3903030 37 94.6 35 ................A..G................. TACATGGCGCGTCGGCTCGGCGGAGTGAAGTGGGG 3902958 37 100.0 37 ..................................... TGGACGCGCGACATCCCCGAGACCGCCCCACGCGCGG 3902884 36 81.1 39 .....A....CT......-...G.........A..G. TAGATCGACACCGACCAGACCGTCACCATCCGCCGCTAG 3902809 37 89.2 34 C.......T.............G.....C........ ACCTCCTCAACGGACTCCAGTGTGACCCGGCGCG 3902738 37 94.6 33 ........T................A........... CTTGTACGTTCCGAGCTCGCTGGGATGGACGGG 3902668 37 86.5 35 .CA...A...C........C................. TGGGAAGGACACTCCTAGGTGGTGCTGACCACCAA GCT [3902644] 3902593 35 78.4 0 .C........-....G.A.T-.C.........A.... | ========== ====== ====== ====== ===================================== ======================================= ================== 40 37 96.1 36 GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC # Left flank : CCCCGGCGCTCCACCTCAAGAAGCCTCGACTGCCAGGAACAAGATCCCTTCCCAACGTCATGGATCAGTGCCAGGTACCCTGCGAGCTCACCCGCCCCGAAGATCTCGCCGAACCGCCGCGCCAGCGCCGCCGAACCCCGCAAGTGATCTTCCAGAGAATGCCGGTGCCCCGAAACGGAACTTCGGCTATGCGCGTACAGCGGTGTGACAACCGACATGAACGAATTCCCCCTCGGGACTACTGATCTCCACTCCGCAATCGAGGATGGAAACGTACACAACGCCGCTGACAGGAGCGTAGAAGGCAGCACAGGACGACCCTCACCGCACAGACTGTGATTACGCTGTCATCATCCGCACCGAAGGCGGTACTTCGGAACCTCTAGTACACGCACGACACGCGGACCGCTCCGAAGGAAGATGCCCGGCTGATGCACTTATGCTCCTCTCGCTTCGCTTCGATCAGAGCACAGATAGGCTGCCTGAGCTGGTCAACCGGC # Right flank : TCTTTGATCCCGTACTGGTGGCTCCGGTACCGGTGGGGCGGTCGCTCTTCGGGACGTGCGGCCCTAGAGAAGGCTGCCCAGGGACCCAAAGGGGTGGCGAAGCTGGGCCGAGGATCGCAACCGCTGGAGCCACACGAGGCCAGGGCCGCCATGTGGCGGTTGACTTCTCGGGTGGCCCTGGGTTCAACCCGGGGGGCGAGATGACGTGTCGATGCTATATAGGTGACATTTTTGAAGTACTTGTCATGGGTAAGGTTAAGTGCGCCACCCGGTTTCGGCACTCAACCAGGGGTGAGTACGCCGTCGTGACGTGAAAGGCGAGAAAGATGTTCCAGGGCACTATCCCGGGCCCCATGCGCGCCATCGTGCACGAGACTGCCGGAAGTTGGCCGCGCGGAGACGTCTACGTCCCGTGCTGCGGAAACTTCACGATCGAGCGCAGCGTGGCGGGCATGGGCTTCGCGCTCCACTCCTCGGACGTCTCGATCTACACGACCGCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.70,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [52-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3914261-3914939 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065050.1 Streptomyces solisilvae strain HNM0141 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================== ================== 3914261 37 100.0 36 ..................................... CCGATCGTGTACGAGGGGCGCCCGGCGACCCTCAAA 3914334 37 100.0 37 ..................................... GTCTCATGCCGCTCCGACAGGAGTCGGGCGTTCGCGG 3914408 37 97.3 35 ................G.................... TACACCCGCGGCGAACTCGACGGCCTCGTCGGCAT 3914480 37 100.0 35 ..................................... TACTTCCCCGTGATCGGCAAGCACGACGCCGACGG 3914552 37 81.1 104 C.......C.......G..A.G..........A...T TCGCTATGCTCGGCGACGACGGCGCGGTGCCCGGTGACGGCCGCCCTGGAGTGGCCGAGGATCACAACTCCCTCGCCCCCGGGGCGCATCTGCGCTACCGGCGC 3914693 36 78.4 36 .......CC.-.T.....A.CG..............T CCTCCTCGACCGGGCAGCGTTCACGCAGTGCGGGGC A [3914710] 3914766 36 89.2 100 ........C.........A..-......A........ GGCCTGACCGCCACTCATAGCCGCCAGCGCGTCCGGGGGTGGTCGCTGCCCGGAGCGGCCAAGGAACAGCGATCGCTGTGCCGGTGGCCGACCGCCGGTG 3914902 36 75.7 0 ...A...CC.....T.G...G......-A.A...... | CG [3914924] ========== ====== ====== ====== ===================================== ======================================================================================================== ================== 8 37 90.2 55 GTGGCGGTTGCCCTCCCGGGTAGCCGAGGATCGCAAC # Left flank : GGCCCGCATCCTCGCCCGCCACCTGCGCGGCGAACTCCCCGGCTACCTCCCCTGGACAGCCGCCTGATGGACATCCTGCTCACCTACGACGTCGACACCACCAGTCCTGAAGGCCGCCGCCGACTGCGCCGCGTCGCCAAACTCTGCGAAGGCCACGGCCTACGGGTCCAAAAATCCGTCTTCGAAATCGTCACTGACAACAAAACCCTGCTGCAACTCCTCGACCAGCTAGACACCATCATCGACACCAATACCGACAGCATCCGCCTCTACCGCCTTCCCGGAGATGGCTTCGACGACGTCCAGACCCTCGGCACTGCCCAAATACAACCGCACCGCGAAGACCTCGCCCTGTGATCGCCCTCCTCCAGCTTCGGAACCTCAAGTACACGCGCGACGCGCAGATCACACCGAAGCAGAAACCCGATTCCAACCCTCTTGCCCGGACTCCGTAGACCTCTTGAAGACTGGACGTACGCTGTTCTCGCTGATCAACCAGC # Right flank : CCGAATGATACGTTGCCATGCCTGGCGGGGCGATGAGGCGACGGTCGCTCCGCTAACGGCCAAAATTCACCACGCCGCCGGCAAGCGTCATCAGCGTACAGTCACCTAGACCCAGGACCGTTCAGACCGTGGTGCCCGGCCGGAAATACGTGGCCGGGCACCACGGTCCACGGGAGCATCCCGGACACTCCATGCCATTACATCAGAGTGCCCTGCTCATAGCGGTCTGCCAACGGGCCCAGCTCCCGGACTTCATCTCCCGTGACGTCCTTCCACCACTTAGCGAAAATACGGCGGTGGCACCACTGCGCCGGGTCCATCAGGTCCTCAAAACAGAGCAGGACCAGCCTGTGTTCCATCTCCGCCTCGGCTATCTCCTGTAGCCGCGCCGCGAGCCATGTGGCGCCAAGTCGGTCCAGATCCGCGCGGTAGGCCGACGTGAACTCCGGCAGAGGCTTGGAGAAATACTCTCTCCGAGGCGCCAGTTCCCGCACCACGTG # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-1.11, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTTGCCCTCCCGGGTAGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //