Array 1 3887-3063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOJ010000048.1 Coleofasciculus sp. FACHB-SPT9 contig48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3886 37 100.0 36 ..................................... TGTGCGACAACTTATTGATGGGTAGACCACCGTTCC 3813 37 100.0 36 ..................................... TGTGCGACAACTTATTGATGGGTAGACCACCGTTCC 3740 37 100.0 35 ..................................... TCCCCGATTTCTCTCCTGGCGGCTTCCCTGAAGAA 3668 37 100.0 36 ..................................... CAACGACTTATGGAATCAGCTTAACGACAAGATTGC 3595 37 100.0 37 ..................................... CCATGTATCGATGATGCAACAAGCCAAAACCGCTGGC 3521 37 100.0 18 ..................................... GAATCACGAATAGTTCAG Deletion [3467] 3466 37 100.0 37 ..................................... TACAAAATCAATGGCTGAACGAGGGAATCCCAGATAT 3392 37 100.0 39 ..................................... GATACCTGGATAACAGAGCAGGCGGTATCTGAATCTGAA 3316 37 100.0 34 ..................................... ATTTCAAGTTCCAATTGGCACTTAAAAATATAGA 3245 37 97.3 35 .......................A............. TCGTTGCACCGTACTGAGACAGCCAAGTTTTTATC 3173 37 97.3 37 ................................A.... GTCGCTGGCACAAATCCAGTTGCCGGAAATCTTGCCC 3099 37 94.6 0 ................T...................T | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.1 35 GTTTCATCAACCCTCCCGCCTTGGGGTGGGTTGAAAG # Left flank : ATATCAATATAATAAGAGATTAATAGCGCCGTTTGTACATGCTTATTGCCTCTGTACAGCGTTAAGTTAGGGTTTGTTTGACTGCTCGTTTGGCAGTCCTACTTTCTGAACCCTGGTAGCTACCCGCCCATGATGCTGGCTCTATGAATACCTTCTTCATAGGGTGAAAGGTGCGCTCCCAGCGAAATGTGGTAAAGCTGAGGGAGAAGGTAAATTTATCCCAAAGCCCTAGCCCTTGTTAACAAGGGTGCGGATTACCGTAGTGGTGGCTCCGAACTCGTCCCCTTCGGGGGAGCCTTCCCTATTTTTTTTCTGACGGCTGAAAGCGGGGTCAAAATCCTGGAGATGCCGTCAAAAAGTCAAAACTCTTGTCCCGTCTTGATTTTAGACTTTCACGCCAGTAATCTTTCTCCTAGAGAAAGAGCTGAAATGAGCAATTTAAAATCAGCCGACAAAAATGTATTTGTCAGGTTGTTTAGACAAGGGTTTCAGCGGGCGCG # Right flank : GTTATAGAGCTGCGCCAGCAATCTCAATAATAATAGTTGTAGATAGTGCCACAAATTTAAGGGGGGTTGAAAGGAGCGCCTGCTTTGTAATTAACGTGAGTTGGGGATAAAAGACGGATAAGACAGATAGGCTGAAAGTGCTAACTTCTTATCCCTGTGCTTGCCCCATGTTTAGTTTAGAAGACCTGTTCTAATCCAGGTATTGAGCAACCTCCGCAAGTCTCGGACGTGCCCCCACTAACAGGGCATAAACGGTCTAGGGTTTGAGGACTTTCAAAAATTACAGTAATTTTATTGAGGCGCTGGTCTTCATCCAAGTCAGGAAAGGCTCTCGCCAGAACCATTTTTCGCAGCAGTGCAATCCTCGCCTCAAAGTGGCTACCATCCTGAAGCTGCACGGCTATCATCGGCAACACCTTGGGGCCTTCTGAAAATCGCTGGGTAAGGTTTCCATAGTCATTTGAGAACTTCTGATAACTTCAGCGCCAGTGGCATTGTAT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCAACCCTCCCGCCTTGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.40,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 878-1343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOJ010000052.1 Coleofasciculus sp. FACHB-SPT9 contig52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 878 36 100.0 36 .................................... TTCCCAGCTCTGTCAGACGCTAAACCATGTAAAGGA 950 36 100.0 37 .................................... AATTACCTATTTGACACTTCTTTCCGACATTCTCTTT 1023 36 100.0 36 .................................... GATGATAACGGAACAACGATGATTGCAGTGAAAGAG 1095 36 100.0 37 .................................... TATTTAGTTCCTTGCGTAAAAGTTAAAGGGAACTTTG 1168 36 100.0 34 .................................... TATCTTCTGAGGGCAGAAAGTACACCATCTGGCG 1238 36 100.0 34 .................................... TTGCAGCCGTTTTTGCTAGTGGATATGTGCTGAT 1308 36 86.1 0 ..............C...T.TA...A.......... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 98.0 36 GTGATTCGTGGCTTTATGCCGTTAGGCGTTGCTCAG # Left flank : AGTAAGACGGTTTGGTTGTTTGTTTTTGGGAGAAAGCGACCAGTTGATTAAAACGATCAAACTTGCAAGGGAAGATTATCTAGAGGGAGTCAAACAGTGGGCGATTAGGGATAATCAAGGCAGTTTAACCTTACCCTATTGGGTTGACCATGTAGGGTCAAGAAATACCCGATTTTTGAGGTATCGGATGGAGGAAATGCCAAGCTCACCACCTCCTGATTTGGCGTGGACGATGATTCAATCTCCGATTTGACAAGCATCTCTGATGGAAAAGGGAATTTAAAGTAAAAAAATAGCCCACAGGGTTACAGGGTGAGGGGTATGGCAATTTAGTCAAGGAGAAACCTGCTTGCTATTTCTGGAAAAGTTTATAGGGACTGGGTTTGAGGGGCTGAAGGTAAAGGATATTTTGTAAGTTTTGTGTTTTTGGGTTCTCTATCCCAAAGGTGCTTGTAAGATTGTAAATGAGCCTTTATCAGTCAAAGGGTTTCCCTTTTGCT # Right flank : GCAACTTTAAATCAAAACTTCAACAGCAAAAGTTCACCTAAAGCAGCTCAGAGCATATCAAAATATTTATCCGGTTAGGGTACTCAGTGCAAGTCCAAATTTCTTTGGAATAAGCAGTGTCCTCGAACCTTGGGTTTCTCAATTTCTTTTGCGGTCAACTCATCAACTTTTTCCCGTTCGCCTGAACTTGTGTTACATTCCACTTCTATTTCATCTTAATTTCATACAATTTCTTACCACGCGATTTGACACCAGCTCAAACCTATTAGGCTCAGGCACGTTTTTTCGGCTGGCGTTGAGATAATTGCGGCTGATTTTACCCTCATGTTTCACGAGAAACAACACGAAGACTTTCACTGATTGAGCCAAGGGCACTGTGAATTTCTGCTTTCATCACCTTGGCTTTTGTGCGAATCCCCTCTGTGTTTTCTTGTAAGTACGTCAGGTGAGAGTTAATTTGGCTAATGTAATTTAGGGAAGATTGAATGCGCTGAATCTGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCGTGGCTTTATGCCGTTAGGCGTTGCTCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 41153-39439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOJ010000027.1 Coleofasciculus sp. FACHB-SPT9 contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 41152 36 91.7 40 .......T.T..C....................... GGATCAGATCCTACATTGACATGAAGACCAATACCAAAAA 41076 36 100.0 42 .................................... TAGAAAAAGTCAAACCAACTTTCTACAGTTACATTAGAACAG 40998 36 97.2 43 ..T................................. GGTCTTCTTTTATTACCAAGCCTAAGCTTTGTCGGGACGCGAA 40919 36 100.0 54 .................................... TCGAATGCTGGGGGGCGAAGCGAAGGTAGAGAGTAACCGGATGCGTACCGGAAA 40829 36 100.0 40 .................................... GCGATCTGTTTTGTGATGTAACTAGGAATGATGTAACAAC 40753 36 100.0 45 .................................... ATCTTTGATTCCATACCTTTCTTTAAGTTCTTGCAGGACGATGGA 40672 36 97.2 41 ...................................A GGAACAGCTTCGAGGCATTTTTCTAAGTAAAGCTTCTTGTA 40595 36 86.1 37 ..T......TA.....A...C............... ATCCTTAAAATATCCTCTTTAACTGGCAATCTATGGA 40522 36 94.4 45 .G..................C............... TTGTTTAGTCCGTTGCCGTCACGGTGGTCTACCATCTTTGGCTTG T [40519] 40440 36 97.2 36 ..T................................. CAGATCACCATTGGCCCGCACTTGCGCGGCATTTTA 40368 36 94.4 36 ...T.......T........................ TAATCCCAACTTACGCGGTGCATTAATTCGCTCGGA 40296 36 91.7 36 ................T........AA......... AATCAACAGAAGTTATTGTCTAATTAAACTTAGGAT 40224 36 100.0 40 .................................... GCAGATTGCATCATGTCTTGACGCATCTTGTCGAAAGAGA 40148 36 100.0 43 .................................... TGGAATAGTCCATCCGGGAACGGCTGGGAGTTGTTGCGGATTA 40069 36 97.2 43 .........T.......................... ACCCCTTCACCCTTGGCAACCTTGAAGGTGTAGATGCTGTTAT 39990 36 100.0 38 .................................... ATCCACAGCCAGCGACCGCTGGGAATTGCTTTGAGCTG 39916 36 100.0 36 .................................... TCTTTGTTAAACCTTGGCGATAATTTATATCGACTC 39844 36 100.0 37 .................................... AATTCCTGCGGACTCATGCGATCGCCGCTGTCATCAA 39771 36 100.0 36 .................................... GTTTTGATTGCTATATTCACACCTCCACCATTCACA 39699 36 97.2 39 .......................G............ TTAAATCATGTAGCCGGATACGGAAAGGTAAGGAATGCC 39624 36 97.2 43 ...T................................ CCCTCAGTCCGGCTCGCCACGGCTGGAGCGCCCGCGGTGCAGT 39545 36 94.4 35 ..............................A....T GCCCGATCTACCAACTCATCAATTCTGTCTTTTGC 39474 36 75.0 0 ..........T.....A.........TT..T.CCCA | ========== ====== ====== ====== ==================================== ====================================================== ================== 23 36 96.1 40 GTCCCTACTCGCTAGGGAAATTAATTGAATGGAAAC # Left flank : TCTATCAGCCTTACTTAATTCGCTAGGCGATCTTTATGTTATTTTATGTGGTGACTTATGACATCCCTTGTGATAAACGTCGCAGAAAAATATCAAACCTATTAGAGGGGTAGGGACGACGAGTTCAATACAGTGTCTTTGAGTGTGTCTTAGCTCCATCAAAGTACGAGGAATTACGCCAGAGACTTCAAAAGAAAATCAATGTAGAGGAAGATAGTGTGCGTTTTTATCCTCTTTCTCGACACACCCTGAGTCAAGTAGACGTTTGGGGTGGTCTTCCGGTAACACAAGTACCAGGTTCAGTAATTATTTAGCTGTTGTGCGAGGGATTTTACGAATGGCTGGATTCCCTGCTCTAGCGTTATATCCCTCGCTCCCTGATGTAATAAGACTTCCAGCGTTGTGAAGCTATGAGGAATTAAAAGTTTTTGCGCCTCAAACAGGATCTCTCGCTAGCGCTCGCTGGACAATAGGCGGCGTAAGAGTTTCAATAGGGGGGA # Right flank : CAGTTCAAGAGGTTCAACAGAGGGTCGAAAGTCAGGACAGCGATCGCTCTCTAGAATTCAAAGCGCCGAACTCTAGCTTCACCCGTTAGGAGGGCCGGAAGTCGAGACAGCGATCGCTATCTAGTCCTGTGCAGTGCCAAATTAAATGACGCTAAGACAATTTCGTGTCGCTGAGCAAAACTCCCTATTGCAGGATACAGAGAGAGTTTGTTCAGTAATTTAGCATTTGGCTATCAGTATTGCTAGCTAGATTGAGCCGATAAAGCAAGCCAGATTTAGCTTTGCCTCTTTAATGACACTGATATGTCTCCATGTCAAATAATAAAGTCACTGTACACTTTGGCTTCATCTCAAAAGCTGGGATGTTTGGCTTTAGCTCCCTACACCAATTTTTTTTAGTTCCTCATTTTACCTTTTTGGGTACGCAAAAAGATAAAATTTTAAATATTCAGCAACGTAAGTATCCATGATTATCACTGTAGCCTCGTTCAAAGGCGGCG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCTACTCGCTAGGGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [13-13] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 49884-45382 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOJ010000027.1 Coleofasciculus sp. FACHB-SPT9 contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 49883 37 81.1 35 ..............AA.....C..G..T...T....T ATGACCGCGCTAGAAGGTATTGCGGAAACTGGCGT 49811 37 100.0 36 ..................................... CGTAGTAGCTTTTAGTTCCAAAGGAGTAATCCTAAC 49738 37 94.6 38 C....T............................... AGCCACTGGTTCAAGACTGAGAGCAAGCTTTATAACGG 49663 37 97.3 36 ........................G............ TTGGATCGGTAGCTTCGACCCCATGCACTTTGATTT 49590 37 94.6 36 ....T...........................A.... TTCAACGGGGCAAAGCCAAAATAAGATCGTTTTTCC 49517 37 97.3 37 .........................T........... CTCTAAATCAGTTAATGCTTACCGATGATTGGCAGGT 49443 37 89.2 39 ....TT..C.......................T.... CCACAACTTTATCTATAGTTGCAGTTCTCTACAGCGTTC 49367 37 97.3 35 .........T........................... TTTGATGGAAAATTTCACAACTTTATCTATAGTTG 49295 37 97.3 35 ...........G......................... ATAGCTACACTTTGCAAGGGCAATGATAAAGAGTA 49223 37 89.2 36 ....A....................T....C.T.... TCTTGCACTAAGCCAAGATCGTCGTCCAAGATGAAA 49150 37 97.3 35 ....A................................ ATTGAAGGCGTCCGGGCACGGGTAACGGTCGGGAC 49078 37 97.3 35 ....A................................ TCATCACAAAAAATCATGCATAACATCAAAGGATT 49006 37 97.3 35 ....A................................ TCGGAGTCGGCAACCCCTTCTACCTCGCCAGATAG 48934 37 94.6 39 ....................T.......A........ TAGTCCCGCTTGGGCTGGGTACGAGCGCTACGCTCAATC 48858 37 100.0 35 ..................................... TCTGGACTTCTTTCCATTGATATGTGCGACCTCAT 48786 37 97.3 35 ...............A..................... TTAAGCCAGACGGCGCTGGCTAAACGTTACGAAGT 48714 37 97.3 35 ......................T.............. CATAATTTGCTCGACTTACTAACTGATAATTTAGC 48642 37 97.3 38 ...............A..................... AAGCGCGAAGGTGTCAAGTGCAGAAGTGTAAATAAATT 48567 37 94.6 37 ..............T.............T........ CAAACTGATGTTCGCAAACTGGTCATCGCTGAATACT 48493 37 100.0 37 ..................................... CAAGAAGGCGAACGAGTTACCTACTGGGAACAGTGGG 48419 37 100.0 36 ..................................... AGAAAACAAGTCTGCTGTCTGTACAGTTAAAAGCTT 48346 37 97.3 35 ..............T...................... GACAGCGGTTCAATCCATTTTGAAGTGGACGGCGT 48274 37 94.6 36 .........................TA.......... TACAGAAATTGTCTCTGGCGGCGAACTGGTATTAGA 48201 37 100.0 36 ..................................... TTAACGCAATTAACTCTGGGAAAAAATTCTTCTTTT 48128 37 100.0 36 ..................................... AGTCAAGAGATAAAAGAGTGTGCATGGTTGTTATAT 48055 37 97.3 39 ................................A.... CTCCGTTGTTAAACTGACCAACCAGATTGAGAAGCCAGA 47979 37 100.0 31 ..................................... GCATGAAAACCAGAGGCACTTTTTATTAGCT 47911 37 100.0 39 ..................................... TTCTACGAGGTACAGGTATATCAGGATAAAACGAACAAT 47835 37 100.0 35 ..................................... ATCATTCCCACAACTGAAAACTTCGGTGTAACTAT 47763 37 97.3 36 ..............T...................... CAGCAATGTCAGTTGTCAGGGGTTCCAGCTTTTGTA 47690 37 100.0 36 ..................................... TATCAGGTGCGCTTGGATGGCAGAGATAAGAGCAAA 47617 37 100.0 36 ..................................... CTGTGAGCCAGTAATGCTATAAACTCCACCGGAAGT 47544 37 100.0 37 ..................................... AGGAATTTGAAACGGCGACGGACAATATTTAAGAAGT 47470 37 100.0 35 ..................................... CCCATCTGGCTTCAGACCAAGGCTGGTGATGATTC 47398 37 100.0 36 ..................................... AAAGGTTCTCCCTCTCAGCATCTGCTACAGATGCCC 47325 37 100.0 36 ..................................... CATCGAATTTGGCAAGGAAGATTTCGCCTTGTTTGA 47252 37 100.0 35 ..................................... CCAAAACGGACGGTTCTTATATACGGAACCGAATC 47180 37 100.0 35 ..................................... AAAAGCTGAATTGATCGCAAGAATAGAGGAGTTTG 47108 37 100.0 34 ..................................... CCGAGAATCGTCCCCAGTTTACTAAGTTGCTTTT 47037 37 100.0 36 ..................................... CAGCGATCGCGGGAGTTACGCTTTCGGGGAATTAAA 46964 37 100.0 36 ..................................... CTCAGACGGAACTCCCCGCGCCTTAGCGAGTGCAAT 46891 37 100.0 37 ..................................... AAACGAGCGTTAGCAGGCTCCTTAAGTCCCATCGCAG 46817 37 100.0 35 ..................................... CCCTTCAACAACCCAAGTGTCCTTAATCAAGTAAA 46745 37 100.0 40 ..................................... TTGGTAACTACGGGCGCTTGTATTTCGACATCGAAAAGTT 46668 37 100.0 36 ..................................... CTTAACCAGTGACAGACAGCCTTGATTTAGGTGCGT 46595 37 100.0 39 ..................................... TCGGGTTTATGTCAAAGTTTCCCGTTATCCGGTCAGCTC 46519 37 100.0 35 ..................................... AACACCGCTCCTGAGAACTTTATTGCTATTCAGTG 46447 37 100.0 35 ..................................... GAAGGTGACTTGTGGCTGGCGAAGAAGCAGTGGGA 46375 37 100.0 39 ..................................... TAGAAGAAAAGATCGCAAAAGTTAGCGCCCCTCAGTATC 46299 37 100.0 37 ..................................... GCGCGGGAACGGCACTAGAAACAACCTATACCGCTAT 46225 37 100.0 37 ..................................... GTGCCCTGATTAGATCGTATTCTCCTTGCAATCGCCG 46151 37 100.0 36 ..................................... GTGATGAATTTTTAGCCCAGTTTACCGATGGCTTTT 46078 37 100.0 36 ..................................... GCGGGCTACCTCGTCTTGGGTGAGCGCCCGCGACCA 46005 37 100.0 36 ..................................... GCGAGGAATTCCACTGCAAGAGTCAGAACGCAGAAT 45932 37 100.0 41 ..................................... GAAAGATGGAATTTATTTCGGTGTTGAACTGGAGACAAAAT 45854 37 100.0 36 ..................................... CGATCCGCTGTTTTGGTAAGCGCTGCGGATAAATTC 45781 37 100.0 36 ..................................... TAGTAGAAAATGCCAATCCGGATTTGTTTTTAAGCT 45708 37 100.0 33 ..................................... CACCGTGTGGGCGCAATGCACGGACGAAGTTTG 45638 37 100.0 37 ..................................... CTGTTGACTTTGATGATGCTTGGCGATGGATTGGTTA 45564 37 100.0 37 ..................................... GTGAGGATTGCGATGGTTCGGGAAAAGATGAATCGTT 45490 37 100.0 35 ..................................... TACGTGCTAACTCACGAGCAATTCCCTGATGGCAT 45418 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 62 37 98.3 36 GTTTCCATTCAATTCGTTTTCTCAACGAGTGAGAAAG # Left flank : CTGTCCTCTATGAATGATTATCCCCCGACAGCATCGGGGGATTTTTTTGGGTTTGTTGAGTTAAGCAGTACTGCGCCAATTGATTTGGAATTTTCTGCGATCTGCTGGTTGCAGCGGTACTTTGCAACCACATCATTTCCACAGTCCTCGCAATATTTTCTGCTAGTTTCAGAAGTTTTTATACATTAATATACACCGCATTTACTTAACGGTAAATGCGATGTGTATTTGTTTTGCATTTCTTTTTTTAATTTTTGGACTTGGAGCATTCCGGGTTCACCCCTTTATAGAATACTCCGATTAGACAGGCTTTTGTTGCCTGTTGATTTTGGTTATCTGGACTGTGCCTCTCGCGTTAAGAGGGTGCCAGTCCCCCAAATCAACAGTAGTTTTTCTTCTCAGCTTTGTCAATAGTTAGTTAACTTGTTACGGTTAACTCCTTCTTTTTAAGTGCGAAGAATTAGTCCTTTGTAGAACATTCCAATTAGGCAGGATTTATA # Right flank : TCCGGGCTTTGAAACGCCCTCTGGCTCTTTATTCTACAAGAGAATTTGACGGGTGATTTTTTAACCCCTATTGCAGCCTTCGTTATTAGTACATATTCTCAATTACGCATCAACAGCCACCACCAAAACTCTCTATCGCTCTAGGTTCTAGCGTTTTTGACGGGACTCCCGTTAAATCGCCCCCACTTTCAGCCGTCACAAACGTCTTGTATGGAACGTTACTGAATCCAATTATCTTATTCAGGGGAAGCATCCCAAATGTGCAATTTCAAAAGAGGGTGAAGAAAATTTATATCTAAATGCTCCTCCACGACCGGATTTTAACAAAATGGGATGCTCCCCCATTCAGGCTTCTATGAACCATCACGACTTATTAGTTACTGCCTACTGTTTCAAAAGCCAATATCAAATAAGTAAAACAGTAGAACCATTCATACCCTAATAAATCGCTTCACTGGTCAATAGGCACTGCTTGCTGATTACAACTCCCCGATTCCAAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTCGTTTTCTCAACGAGTGAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 58867-59903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOJ010000027.1 Coleofasciculus sp. FACHB-SPT9 contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================ ================== 58867 36 100.0 35 .................................... TAGAGCATTTCTGATTCGTCGTTGAGATCGCACCA 58938 36 100.0 48 .................................... CCTTGATATTCTCCGTCATATCCAACGACTCGATTAGGCAGGTTTGAA 59022 36 100.0 44 .................................... AAATACTGTTTAACTTCGTTGTCTAGATTTGACATAATTCTCTA 59102 36 100.0 48 .................................... CGCCCAAGCTGCTTGAGGGCACAAGCCAACATGATAGCAACGAGTGTC 59186 36 100.0 42 .................................... TTGTTGTAACGCTTGATCAATTCTGTCATTTGAGAATTAAAC 59264 36 97.2 34 ..................................G. TAATGCAACCCAAGCTTCACTAACACAGTTGTCA 59334 36 100.0 35 .................................... CACACAGGACGCGCCCAGCGAATCCATTCCTCATT 59405 36 100.0 45 .................................... TCTAATAGCTCCCTTTTTACATACATTTTCAAAAGATTGCTTACA 59486 36 100.0 41 .................................... ATTCATGATCAAATCCTCTACATAGATAAGGGTAATGTATA 59563 36 97.2 44 ................................G... GGTAGACTTCTGCCGTCGTAAGGGACTTCTTTTAAGTCTTCCGC 59643 36 100.0 43 .................................... AGGATTGTGGAGTGCATAATGCATAGTCTGCTAGGGGTTATTT 59722 36 97.2 36 ...............................A.... TTGTCTGATTAATCTTATTAATCTTATTAATCTGAA 59794 36 100.0 38 .................................... AGCATAAAATCAATTTGCCCTTGAGTAACAAGCTTCAA 59868 36 83.3 0 .........T........T.....C...G..A...T | ========== ====== ====== ====== ==================================== ================================================ ================== 14 36 98.2 41 GTCCCTACTCGCTAGGGAAATTAATTGAATGGAAAC # Left flank : ATAACCGCTGACTCTGATCAAGCATTGGGCTACTCAGCCAACCTCAATGCCGCCACTGTCGTCAACATATTCGCAAAGGTCCTAAGGACAACGCTACAGGGCAGCTTGCTTATGTTGATTACACAGTAAAGCTGCCGCGACGCTCATTTGATGAGTTTAGCCGATGGGTCTATCGGTATATGTACTTCGCTAAGGTACTCGCTCCCCAAGAGTTAGTCGAGAAGCACAAAGCCGCTGCTTTAAATCTGCAACAGCTTTACGAATAAAATTTTGCCTTTTCAACACCACAAGTACTCAGTTCAGTAATTATTGAGCTGCTGTGCGAGGGATTCTAGGAATGGCTAGATGCTCCAACTTTGCGTTAGATCCCTCGATTAGTTACCTAGCAAGGTTTTCAAGCTTGGGAAGCGATGGAAAATCAGAAGCTTTTGCATCCAAAACAAGATCGCTCGCCAGCGCTCATTGGACAATATGCAGTGTAAGAGTTTCAATAGGGAGGG # Right flank : TATCTAAGCTGGGGCGATCGGCCACAACGACCTCCCCCTCCGCGTGATGTTCCAATCCTTTTGTAGTGTGCTATAAATCCCGCAGGATCAGATAGCGAGCGCTGTCTCGACTTCCGGTACTCCTGACGGGTAAAGCTAGAGTTAGGCGCTCCGAATTCTAGATAGTGATCGCTGGAAAGATGGACCAAACGAGTGAAAACGGCTTTGTACTACTGGAGCCAAACATCGAAGTTTTTAAGAAGAACGGTAATAACTCGTTTTCGCAGAAACCTGGAATCTTGTAATACAAATCAATTCCGTTGACCTGAATTACTGATACAGTTAGCTCTCCTAGCATCCTTGCTGAGCATTACTACCTTTGTAGGACATAGAGTTCGACTTTGATAAAAGCAGCTCTTGAGGATTCTCCACTGTTTAACTTGAGGCAGATAGCCTTGCTGGTGGAACATTCCGCCGTCCTGTAGACAATTGCTCTTGGGTTGAAACAGCAGTGAGAAACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCTACTCGCTAGGGAAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 880-1207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOJ010000072.1 Coleofasciculus sp. FACHB-SPT9 contig72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 880 36 100.0 36 .................................... AAAATAGATTACCGTTTTACAGCAGCCCAATGCCCA 952 36 100.0 37 .................................... GTCAGTGTCAAGATTCGTCAGGCTGAATTAGAGGACG 1025 36 100.0 38 .................................... GAACAGGTGAAGGGACAGGTAGGTTACAACAATTTCGT 1099 36 91.7 37 .........A....T....T................ GAGCCACCGCCACCTGCTAGCTTGTTCACCCTTTCTT 1172 36 91.7 0 ..............G....T....A........... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 96.7 37 GTGATTCGTGGCTTCATGCCGTTAGGCGTTGCTCAA # Left flank : TAAGACGGTTTGGTTGTTTATTTTTGGGAGAAAGTGACCAGTTGATTAAAACAATCAAACTTGCAAGGGAAGATTATCTAGAGGGAGTCAGACAGTGGGCGATTAGGGATAATCGAGGCAGGTTAACCTTACCCTATTGGGTTGACCATGTAGGGTCAAAAAATACCCGATTTTTGAGGTATCGGATGGAGGAAATGCCAAGCTCACCACCTCCTGATTTGGCGTGGACGATGATTCAATCTCCGATTTGACAAGCATCTCTATATGGGACAAGGAATTTAGGGTAAAAAAATGGCGGAAATGTTTGCAGGTTAAGGGATATGGCAATTTAGGCAAGGAAAAAGGTGCTTGCCATTTTTCGGAAATTTTGTCGGCATTGGGTTTGAGGGGCTGAAAGTAAGGGAAACTTGGGTAAGTTTTGTATTTTTGGTTTCTCGATCTGGAAGGTACTTGTAAAATTGTAAATAAACCTACCTCAGTTAAGGGTTTTCACCTTTGCT # Right flank : AAGCGATCTGTGGCTTTACCCATAACTTTGCCGTAATGGCAAAGTTATGGGTAAAGCCACAGTTAGTTACGGAGTTATCGATCGTCACTCATGCGGATGAAAGGACTTGAACCTTCACTTCTTGCGAAACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCTCATAGCGTTTACTATCATAGCAGAAACTATCGCCAATACCAGCATTTTATGAGATTTGTTCTTGCCCTCCCGATCAAGGGGGGCTGGGATGTTTTAGCCAGCCAGTAAGGATTCGGCACCATCAATCCACATTTCCGTCCCGCTAATCAGGCTGGAGGCGTCTGAGGCTAAAAATAGCACTAGGTTGGCAACTTGTTCAGAGGAGCCAGGTTTACCATCAGTTAGCGGGATTTTTCCTGCCGGATACTCCACGGGTTCACGAGCTTGTTCCAAGCTCCGTCGTTCGGTGCTTTGGTCAATATTGGTTTCTATGGCACCCGGACAAA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCGTGGCTTCATGCCGTTAGGCGTTGCTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 35468-34483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOJ010000018.1 Coleofasciculus sp. FACHB-SPT9 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 35467 37 100.0 37 ..................................... GACTGCTATAACCTAGATAGTATGTTGCGAACATCAT 35393 37 100.0 37 ..................................... ATCCGGCAATATCTGCACGGCACCCCGTTATGGTCGG 35319 37 100.0 36 ..................................... TATTCAGAGTCCCGTAATAGGTTGGTCATAACGCAA 35246 37 100.0 34 ..................................... TTGAAGTTCTCTATAGTCTGCCTGAAGACCTCGG 35175 37 100.0 37 ..................................... CGATTGAGTGTTACTCCTATTACGAGAATCCTTCTGA 35101 37 100.0 36 ..................................... ATTTTCAGATAAAGGCAGCGGAATTAGGAGGGATGA 35028 37 100.0 36 ..................................... CTTCGTCGCTACTAGCAGGGGGAACAGGTTAACGGG 34955 37 100.0 36 ..................................... CCGAGCGAGTTCTTCCCAGTCGCTAAAACGGCGGTT 34882 37 100.0 36 ..................................... AGAAGCTGATTGAGGCTTCTGGAATTGACCGGAACA 34809 37 100.0 35 ..................................... ACTCCGCAATTCAAGAATTGCGGCCGACTAAAAAA 34737 37 97.3 31 ...........T......................... CCCTCGTGGAGCAGCGCTTGGTAATAGTTAA 34669 37 97.3 39 ....................................A AGATTGCAAAAGTCGAGACTTACAAAAACCCCCAAGGGA 34593 37 100.0 37 ..................................... CGGGCAATCTTCTGGGCTTTATCTTTAAATACTCCAA 34519 37 86.5 0 ..................C..G..A...A.......T | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 98.6 36 GTTTCAACGACCATCCCAACTAGGGGTGGGTTGAAAG # Left flank : AACATGGGAATTTCTGCTTATCACGCTCGTTCTAACTCATAATTATTTCCCAATCTGCACCTTGACAATAGAATAAGAATAATCAACAGCGCCGCAGGTCATGTTCATTTGAACCGCTGAACTGCGAACAGTATGGGTTAGTTTGACTGTTGGAAGACAGTTGTGCTTTCTGACCCTGGTAGCTGTCCACTCTGATGCTGCCGTCGAAAGACGGGAATAAGGTGCGCTCCCAGCAATAGGGGTGTAGACATACTACAGTGATGGCTACCGAATCACCTCCGAGCAAGGAGGAATCCACTCTAATTATTTTTTTGACGGGTCAAAGCGGGAGCAAAAACCCTTGGAAGCCGTCAAAAGCTCAAAAACCTTGTCTAGTATTGACCTCAGGAATTTCGGCAACCAACAATTTTCTATTTTTTAGGGAGATTGAGCAGGAATTTTCGGGAGCCGTCAAAAACACTGCTAAAAGGCAGCCTAGATAAGGGGTCTAGGTGGGAAGA # Right flank : GTAGGTGTTAGAGTGGATTGAAAGGAGCATTCGATTCGTGATCGTTGTGCGCTTTGAGTGATAGATATTAAATGACATCAATTTGTCACTGCTGCTTCAGCGACATTAATTTGTCACAACGACACACAATTAGTCACAACGACAGTAATCTGTCACTGATGACAATTAATTAGTCACTGTACAATTTGATTCAAGCCGATGGGCGGATTTGAACCGCCGACCGTTCGATTACGAATCGAATGCTCTACCACTGAGCTACACCGGCACTGCCGATTTACTATGGTAGCAGGTTTAGATAGAAACTGTTGCACCCAATTTCTGGAAGAAATGCGATCGCGTTCAAATTTATAGCACCAGCCACCGCCACTGCCGACCACCATCATGCCAAGATGGATCTAAAGTCGGTGGGGATCGAGACGGATGGTAGACCCAAAATTAAAAAATCGCACCCGCAACATCAAAGGCACTCGGAAAGTCAGTGCTGAACAGTATGCACAACT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCAACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //