Array 1 161602-163190 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMCV01000009.1 Raoultella sp. BIGb0138 Ga0304797_109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 161602 28 100.0 32 ............................ GTTGGGTGCTTGGGGTGTCCGTATGACTATCG 161662 28 100.0 32 ............................ TTGAGCCCGAGCTGATGCACGCGGGCGATGCG 161722 28 100.0 32 ............................ GCCCACGGCCAGAATCATCACCTGCTCACCAA 161782 28 100.0 32 ............................ TGACAAGCAACCCCATCCAGACTCCAGCCCAG 161842 28 100.0 32 ............................ TACAACACGGAGCGTGCCGCATGACAACTGAT 161902 28 100.0 32 ............................ TATCGCATCATCGTTGTGGATTTGATAAGGCT 161962 28 100.0 32 ............................ GTACGAAATGGCCGAGTACATTGCGCTGTTGA 162022 28 100.0 32 ............................ TGAAAACCAGAAAACAGGCGCTCAAAATTCCA 162082 28 100.0 32 ............................ AAACAGCGCCGCCAGTGCGCGATAGTTCTGCT 162142 28 100.0 32 ............................ TTATTGGTTTAAAAAACATCAGCGAGAGGGTA 162202 28 100.0 32 ............................ ATAAACATAACTTTGTGATCCCAGCACATAAA 162262 28 100.0 33 ............................ CTGCGCCTCATACGACAGCCAGCGGTTCAGGAA 162323 28 100.0 32 ............................ AAACATCAGAGACAGGTCTTTTTCGTCATGCC 162383 28 100.0 32 ............................ CATGCGGCCGGGAATTTATACGCCGTGCTGAA 162443 28 100.0 32 ............................ CACGCCAGCGCCTTGTCTCGCTCGACGGCGTT 162503 28 100.0 32 ............................ TTACTGGTGAGCTGGATCAGTCGGGCATCAAT 162563 28 100.0 32 ............................ ATTATGCCGACGCTGCAGAGATGGAGATTGCA 162623 28 100.0 32 ............................ TTGCAGGTACAGCGGGTTTGGCTTGATGCCGT 162683 28 100.0 32 ............................ CACTGGTCCCGGCAAATGCCGAGCGCGTCACA 162743 28 100.0 32 ............................ ATTATGCCGACGCTGCAGAGATGGAGATTGCA 162803 28 100.0 32 ............................ TTGCAGGTACAGCGGGTTTGGCTTGATGCCGT 162863 28 100.0 32 ............................ ATAACAGACGAACGCATTGAAAAAATAGCGGT 162923 28 100.0 32 ............................ ATTGAACAACGCCGAAATTGGCTATCTGCAGT 162983 28 100.0 32 ............................ TGTAAGTAATGGCTCTCTGGATGCCTCTGGAG 163043 28 100.0 32 ............................ ACATCTGTTTTAGATCCGTCCAGCGGGATACC 163103 28 100.0 33 ............................ ATCAGCCTTAATCCCGGATACGATGCGATCGGT 163164 27 78.6 0 ...................-A.A..GGG | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGTTCGCTTTCGCCCGGCGTCAACGTACCGCCCGCGCTCTTACGCCGGGCAACGTTACGCTCATTAATGCCGGTGATGCGCAGGATGTCGGTTTTCGACATTTCCGTCCACTCGTGAATATTATCCAGAACGCTGACCGGCAATCCCATACTCAACAGCTCAATCAGCTGCATACCCCGATTTGCCGGTAGCCCGGCATAGCGCCACAGCGCCTTATCGGCAGGTTGCTGTGCAGGAACCCAGGTTTTCATCTCTCCTCCTGAATAATGACATTTGTCATACTTTATTATAGTCATTTGTCAGGTTGTTGAAAGTTTAATCGCTGTCGCGGCGGAGAACAGGCGGGGGTTTTGTTGCCCGCGGACCAGACCCTTTTATTTGTCTATTTTGTAATTCATTGATTTTTATTAATAATTATTGAGTGGTTGAAAAAAGGGTGTAGTGAAAAAATTTGAGGCATTTTACATATAAAACAAAGAGGTGAGTTGATATTATCTCA # Right flank : GTCTTAACTGGCTGATTATAATAAATTTCCCCATTCACTTATGGGTGCGAATTGGGAAACCAGATACTGCCGAAGAGGGTGATTCGAAAGGACCGTCAACAGGACGGTCCGCCGTAGTTGTTTTATCGATCCATGACTCAAATTTTAATGCTGCAACACTTCAGCAAATTTTGCCAGCCATTGCGGATGCGCGGGCCATGCAGGGGCGGTGACCAGGTTGCCGTCGACATGCGCCTGATCGATACCGATTTCAGCATAATGCCCGCCGCTGAGCCGCACTTCCGGCGCGCAGGCCGGGTAGGCGCTACAGGTCCGGCCTTTGAGTATGCCGGCGGCGGCCAGGAGCTGCGGGCCGTGGCAGACGGCGGCGATGGGTTTGTGTGCAGCGTCGAAGGCCTGAACCAGTTTGAGCACCTCGTCATTCAAGCGCAGATATTCCGGCGCTCGACCGCCGGGGATCAGCAGGGCATCATAATCCTGTGCTTTTACTGCGGCAAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 172900-173710 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMCV01000009.1 Raoultella sp. BIGb0138 Ga0304797_109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 172900 28 100.0 32 ............................ CTGATGGTTGGTCGCGATGACTACCGGATTCG 172960 28 100.0 32 ............................ CGTTTAACTTATTGATTAAATTGATATCTATG 173020 28 100.0 32 ............................ TGCAGATTTATCCGGCTGGCATGCCAGCGCCA 173080 28 100.0 32 ............................ CACCACCCGGGCGCGTATCCCCAGTGAACCGG 173140 28 100.0 32 ............................ TAATGCACCGCATGCCCGCCCGCCTCGCAATA 173200 28 100.0 32 ............................ CATGTGTTCCCGAGGTTTTTTACCGTTTCAGC 173260 28 96.4 32 A........................... ATCACCAACGGATCGGTACGCGATACAAACAG 173320 28 96.4 32 .................T.......... ACACCGGGGGCATTTACTTTGAACGACTTCTT 173380 28 100.0 32 ............................ TGTTCCATGCGCTGTTGCCGGGAGGGATCTAC 173440 28 100.0 32 ............................ CTGAGCACGTTTCGTCATGATGTCGCCATAAC 173500 28 100.0 33 ............................ CTGCAGGTGGCTGACTAGTATCAGGCCTGTTTT 173561 28 100.0 35 ............................ GGAGTCGACGATTTCGTCCAGGGGCAGCGTGACTA 173624 28 100.0 31 ............................ AATCGAGGAAACCACCGACGGGCCACTTCGC 173683 28 92.9 0 ........................TC.. | ========== ====== ====== ====== ============================ =================================== ================== 14 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGAAGGAAGCACAGCAGAGGTTACTCACTATGCAGCAAGAGCAGACGGATTTACCGTGGATTAATTTGCGCAGTCTTTCGAACGGGCAATCGTTCCGTTTGTTTATCCGCCATGGCGATATTCTTGCCGTTCCTGTTGGTGGTGAGTTTTCAAACTATGGGTTAAGTTCGACGGCAACGGTGCCGTGGTTTTGAGATCGACAACCGACGCCCGGTTTTAGGGGGTCGGTTCTCAATATTTTGTCCATTTGTGAATATTACCCAGAACTCTGACGGGTAATCCTCTGTTCTGCAGCTAGATGAGCTGCGTGACCCGATTCGTGGGTAACTCACACTGTACCCATAGGCACGAGCAGGTGCTTTTTACTAGACCCTTTTATTTTCTCCGGTTGCAACTTACTGATTTTTATTAAGAGTAATGGCAAGACTAAAAGAGGGGGTAATGGATTATTTTTGGGTATTATTTATATAAAACAAATGGTTGAGTTGCTATGGCTTTA # Right flank : ATTAACACCGGATCTTCAGGCTGAAATCTGTCATCGGTGTAGGCATTATTGACGATGATCTGGCCATTTTATATTGCCGCCCGGCCTCGTCAGGACAATAATCGCCCCTATGGATGTTTCCTCACTGAATACGGGTCGCCATGATCATAAAAATCGTTTGTCTGAGCCTTCTTTGCATCATCCTGCTCTCCCTTGGCGCCAGCCTGGCCCAGGCGATGCATCAGCGGGAGCTGCGTTCGCAGGACGGCTGGTGGTCCGCCCGCCGTGACTCTGCGGGTCTGGCGCCCGATCCCCACCAGAATGCCCGCCTGGCTATCGTGCAGGTCTATGCTGCGCCCACCTGGGGATGGAAAGGCGTGGTGGCGGTGCATCCCTGGATCATCTATAAACGCGCCGGTGAAACGGAGTATAACCGCTACGAAGTGATTAGCTGGGGAGGCGGGGATAAGGTGCGCCATAATAGCAACCCTCCGGACGGCTACTGGTTCGGCGCGAAACCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //