Array 1 73943-74561 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDK01000003.1 Salmonella enterica subsp. enterica serovar Telelkebir strain 2011K-0078 NODE_3_length_253884_cov_3.39219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73943 29 100.0 32 ............................. CTGTTTAGTAGCGTGATCAAGTCGTCAATTGG 74004 29 100.0 32 ............................. ATTGTGCGGTCGGTGTTAACCAGCGTTTTCCA 74065 29 100.0 32 ............................. ATTTTTGCCTCCAGCGCGAACAGCATGGCGCC 74126 29 100.0 32 ............................. TGATCCGGATTATCTTGGCCGCCTTGCTGAAG 74187 29 100.0 32 ............................. TTGACGAACGGAGTATTGAAGATGTCACACCT 74248 29 100.0 32 ............................. TAATAACAGGCGGTTCTATTACTACCGATTTC 74309 29 100.0 32 ............................. TCATACACAGAGTCTTCTGGAAACAAGCCTCG 74370 29 100.0 32 ............................. CCGCAACGATCGAGAGCGAACTGGACAGTAAA 74431 29 79.3 12 ..................AT...CGC.T. CTAAACATAGAA T [74451] Deletion [74472] 74473 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 74534 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 96.6 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACACACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90697-91702 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZDK01000003.1 Salmonella enterica subsp. enterica serovar Telelkebir strain 2011K-0078 NODE_3_length_253884_cov_3.39219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90697 29 100.0 32 ............................. CGATTCAATATCAGCGGCCAATTCCGCTAACG 90758 29 100.0 32 ............................. ACGGGACTGTTAGGGATAGACCCCGGAGATTT 90819 29 100.0 32 ............................. GGTTACCCGGCGTTTCTGGCTGCGTACCGGCA 90880 29 100.0 32 ............................. TTCGAGTGTCTCGTTAAAAGGCGCGAAAATAC 90941 29 100.0 32 ............................. GTTTAATCTGATATCCCCAGCACCAAAGGAGT 91002 29 100.0 32 ............................. GAGTGGCGAAAGGGGCCGGCCTTGAAAAGTGG 91063 29 100.0 32 ............................. CTTCAGGCCAAACGTACAGCGGAGCTACCAGC 91124 29 100.0 32 ............................. ATCCAGCGCCTCGCGAGTGTTGCCAGTTTTGC 91185 29 100.0 32 ............................. CCAATTCCTCTCCGCGCTGCTGCGTGATTTTC 91246 29 100.0 32 ............................. GCACCCCCATATCTCCAGCCAACGTCTTGAAT 91307 29 100.0 32 ............................. TTGTCTTTTTTCATGTTGATGACGTCGCCCTC 91368 29 100.0 32 ............................. ATCGTTGTCCCGATCAGAATGTCGCCGCAACA 91429 29 100.0 32 ............................. TGTTGGTATACTAACTGTCGCTAAGTGTTCAA 91490 29 100.0 32 ............................. CCATCACCAACTCTCGGTGTTATGGCTCCTTG 91551 29 100.0 32 ............................. ATGATGAAATCACCCCGGAGGGGCGGGGCGAA 91612 29 100.0 32 ............................. CCTACGGGGATATAAGTAAAGAGATCCAACGA 91673 29 96.6 0 ............T................ | A [91700] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAAAATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGTAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //